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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CYP2R1 (CAeditome ID:120227) |
Gene summary for CYP2R1 |
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Gene information | Gene symbol | CYP2R1 | Gene ID | 120227 |
Gene name | cytochrome P450 family 2 subfamily R member 1 | |
Synonyms | - | |
Cytomap | 11p15.2 | |
Type of gene | protein-coding | |
Description | vitamin D 25-hydroxylasecytochrome P450 2R1cytochrome P450, family 2, R1cytochrome P450, family 2, subfamily R, polypeptide 1 | |
Modification date | 20210518 | |
UniProtAcc | Q6VVX0 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CYP2R1 | GO:0005506 | Vitamin D 25-hydroxylase | 18511070 |
CYP2R1 | GO:0020037 | Vitamin D 25-hydroxylase | 18511070 |
CYP2R1 | GO:0030343 | Vitamin D 25-hydroxylase | 15465040 |
CYP2R1 | GO:0030343 | Vitamin D 25-hydroxylase | 18511070 |
CYP2R1 | GO:0042803 | Vitamin D 25-hydroxylase | 18511070 |
CYP2R1 | GO:1902271 | Vitamin D 25-hydroxylase | 18511070 |
CYP2R1 | GO:0036378 | Vitamin D 25-hydroxylase | 15465040 |
CYP2R1 | GO:0036378 | Vitamin D 25-hydroxylase | 18511070 |
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RNA A-to-I events for CYP2R1 |
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CAediting_799756(14878132, -), CAediting_799757(14878173, -), CAediting_799758(14890005, -), CAediting_799759(14890047, -), CAediting_799760(14890066, -), CAediting_799761(14890087, -), CAediting_799762(14890580, -), CAediting_799763(14890604, -), CAediting_799764(14890612, -), CAediting_799765(14890623, -), CAediting_799766(14890643, -), CAediting_799767(14890644, -), CAediting_799768(14890652, -), CAediting_799769(14890658, -), CAediting_799770(14890662, -), CAediting_799771(14890668, -), CAediting_799772(14890679, -), CAediting_799773(14890685, -), CAediting_799774(14890711, -), CAediting_799775(14890716, -), CAediting_799776(14890717, -), CAediting_799777(14890718, -), CAediting_799778(14890719, -), CAediting_799779(14890721, -), CAediting_799780(14890727, -), CAediting_799781(14890732, -), CAediting_799782(14890743, -), CAediting_799783(14890744, -), CAediting_799784(14890745, -), CAediting_799785(14890753, -), CAediting_799786(14890754, -), CAediting_799787(14890768, -), CAediting_799788(14890777, -), CAediting_799789(14890780, -), CAediting_799790(14890781, -), CAediting_799791(14890782, -), CAediting_799792(14890785, -), CAediting_799793(14890804, -), CAediting_799794(14890812, -), CAediting_799795(14890815, -), CAediting_799796(14890820, -), CAediting_799797(14890821, -), CAediting_799798(14890829, -), |
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RNA editing positional annotations for CYP2R1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_799756 | chr11_14878132_- | nonsynonymous SNV | ENST00000334636.8 | c.A1496G | p.E499G | D | B | N |
CAediting_799756 | chr11_14878132_- | nonsynonymous SNV | ENST00000532378.4 | c.A797G | p.E266G | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_799756 | chr11_14878132_- | exonic |
CAediting_799757 | chr11_14878173_- | exonic |
CAediting_799758 | chr11_14890005_- | ncRNA_intronic |
CAediting_799759 | chr11_14890047_- | ncRNA_intronic |
CAediting_799760 | chr11_14890066_- | ncRNA_intronic |
CAediting_799761 | chr11_14890087_- | ncRNA_intronic |
CAediting_799762 | chr11_14890580_- | ncRNA_intronic |
CAediting_799763 | chr11_14890604_- | ncRNA_intronic |
CAediting_799764 | chr11_14890612_- | ncRNA_intronic |
CAediting_799765 | chr11_14890623_- | ncRNA_intronic |
CAediting_799766 | chr11_14890643_- | ncRNA_intronic |
CAediting_799767 | chr11_14890644_- | ncRNA_intronic |
CAediting_799768 | chr11_14890652_- | ncRNA_intronic |
CAediting_799769 | chr11_14890658_- | ncRNA_intronic |
CAediting_799770 | chr11_14890662_- | ncRNA_intronic |
CAediting_799771 | chr11_14890668_- | ncRNA_intronic |
CAediting_799772 | chr11_14890679_- | ncRNA_intronic |
CAediting_799773 | chr11_14890685_- | ncRNA_intronic |
CAediting_799774 | chr11_14890711_- | ncRNA_intronic |
CAediting_799775 | chr11_14890716_- | ncRNA_intronic |
CAediting_799776 | chr11_14890717_- | ncRNA_intronic |
CAediting_799777 | chr11_14890718_- | ncRNA_intronic |
CAediting_799778 | chr11_14890719_- | ncRNA_intronic |
CAediting_799779 | chr11_14890721_- | ncRNA_intronic |
CAediting_799780 | chr11_14890727_- | ncRNA_intronic |
CAediting_799781 | chr11_14890732_- | ncRNA_intronic |
CAediting_799782 | chr11_14890743_- | ncRNA_intronic |
CAediting_799783 | chr11_14890744_- | ncRNA_intronic |
CAediting_799784 | chr11_14890745_- | ncRNA_intronic |
CAediting_799785 | chr11_14890753_- | ncRNA_intronic |
CAediting_799786 | chr11_14890754_- | ncRNA_intronic |
CAediting_799787 | chr11_14890768_- | ncRNA_intronic |
CAediting_799788 | chr11_14890777_- | ncRNA_intronic |
CAediting_799789 | chr11_14890780_- | ncRNA_intronic |
CAediting_799790 | chr11_14890781_- | ncRNA_intronic |
CAediting_799791 | chr11_14890782_- | ncRNA_intronic |
CAediting_799792 | chr11_14890785_- | ncRNA_intronic |
CAediting_799793 | chr11_14890804_- | ncRNA_intronic |
CAediting_799794 | chr11_14890812_- | ncRNA_intronic |
CAediting_799795 | chr11_14890815_- | ncRNA_intronic |
CAediting_799796 | chr11_14890820_- | ncRNA_intronic |
CAediting_799797 | chr11_14890821_- | ncRNA_intronic |
CAediting_799798 | chr11_14890829_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_799758 | chr11_14890005_- | SINE | Alu | AluY |
CAediting_799759 | chr11_14890047_- | SINE | Alu | AluY |
CAediting_799760 | chr11_14890066_- | SINE | Alu | AluY |
CAediting_799761 | chr11_14890087_- | SINE | Alu | AluY |
CAediting_799762 | chr11_14890580_- | SINE | Alu | AluY |
CAediting_799763 | chr11_14890604_- | SINE | Alu | AluY |
CAediting_799764 | chr11_14890612_- | SINE | Alu | AluY |
CAediting_799765 | chr11_14890623_- | SINE | Alu | AluY |
CAediting_799766 | chr11_14890643_- | SINE | Alu | AluY |
CAediting_799767 | chr11_14890644_- | SINE | Alu | AluY |
CAediting_799768 | chr11_14890652_- | SINE | Alu | AluY |
CAediting_799769 | chr11_14890658_- | SINE | Alu | AluY |
CAediting_799770 | chr11_14890662_- | SINE | Alu | AluY |
CAediting_799771 | chr11_14890668_- | SINE | Alu | AluY |
CAediting_799772 | chr11_14890679_- | SINE | Alu | AluY |
CAediting_799773 | chr11_14890685_- | SINE | Alu | AluY |
CAediting_799774 | chr11_14890711_- | SINE | Alu | AluY |
CAediting_799775 | chr11_14890716_- | SINE | Alu | AluY |
CAediting_799776 | chr11_14890717_- | SINE | Alu | AluY |
CAediting_799777 | chr11_14890718_- | SINE | Alu | AluY |
CAediting_799778 | chr11_14890719_- | SINE | Alu | AluY |
CAediting_799779 | chr11_14890721_- | SINE | Alu | AluY |
CAediting_799780 | chr11_14890727_- | SINE | Alu | AluY |
CAediting_799781 | chr11_14890732_- | SINE | Alu | AluY |
CAediting_799782 | chr11_14890743_- | SINE | Alu | AluY |
CAediting_799783 | chr11_14890744_- | SINE | Alu | AluY |
CAediting_799784 | chr11_14890745_- | SINE | Alu | AluY |
CAediting_799785 | chr11_14890753_- | SINE | Alu | AluY |
CAediting_799786 | chr11_14890754_- | SINE | Alu | AluY |
CAediting_799787 | chr11_14890768_- | SINE | Alu | AluY |
CAediting_799788 | chr11_14890777_- | SINE | Alu | AluY |
CAediting_799789 | chr11_14890780_- | SINE | Alu | AluY |
CAediting_799790 | chr11_14890781_- | SINE | Alu | AluY |
CAediting_799791 | chr11_14890782_- | SINE | Alu | AluY |
CAediting_799792 | chr11_14890785_- | SINE | Alu | AluY |
CAediting_799793 | chr11_14890804_- | SINE | Alu | AluY |
CAediting_799794 | chr11_14890812_- | SINE | Alu | AluY |
CAediting_799795 | chr11_14890815_- | SINE | Alu | AluY |
CAediting_799796 | chr11_14890820_- | SINE | Alu | AluY |
CAediting_799797 | chr11_14890821_- | SINE | Alu | AluY |
CAediting_799798 | chr11_14890829_- | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for CYP2R1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_799782 | chr11_14890743_- | 14890742:14890750 | 5SS | 0+5i | CGGTGAAAC | -11.58 | CGGTGAAGC | -7.01 |
IR | CAediting_799783 | chr11_14890744_- | 14890742:14890750 | 5SS | 0+4i | CGGTGAAAC | -11.58 | CGGTGAGAC | -14.15 |
IR | CAediting_799784 | chr11_14890745_- | 14890742:14890750 | 5SS | 0+3i | CGGTGAAAC | -11.58 | CGGTGGAAC | -14.51 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CYP2R1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CYP2R1 |
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The effects of the RNA editing to the miRNA binding sites for CYP2R1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000532805 | hsa-miR-30a-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -20.02 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000532805 | hsa-miR-30d-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 145 | -20.57 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000532805 | hsa-miR-30e-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -19.92 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000532805 | hsa-miR-6830-3p | 14878127 | 14878133 | 7mer-m8 | 14878126 | 14878148 | 141 | -11.65 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000530609 | hsa-miR-30a-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -20.02 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000530609 | hsa-miR-30d-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 145 | -20.57 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000530609 | hsa-miR-30e-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -19.92 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000530609 | hsa-miR-6830-3p | 14878127 | 14878133 | 7mer-m8 | 14878126 | 14878148 | 141 | -11.65 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000534686 | hsa-miR-30a-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -20.02 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000534686 | hsa-miR-30d-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 145 | -20.57 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000534686 | hsa-miR-30e-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -19.92 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000534686 | hsa-miR-6830-3p | 14878127 | 14878133 | 7mer-m8 | 14878126 | 14878148 | 141 | -11.65 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000525015 | hsa-miR-30a-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -20.02 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000525015 | hsa-miR-30d-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 145 | -20.57 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000525015 | hsa-miR-30e-3p | 14878130 | 14878135 | 6mer | 14878129 | 14878151 | 141 | -19.92 |
CAediting_799756 | chr11_14878132_- | ENSG00000186104.9 | ENST00000525015 | hsa-miR-6830-3p | 14878127 | 14878133 | 7mer-m8 | 14878126 | 14878148 | 141 | -11.65 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000532805 | hsa-miR-200b-3p | 14878234 | 14878240 | 7mer-m8 | 14878233 | 14878253 | 141 | -10.9 |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000530609 | hsa-miR-200b-3p | 14880310 | 14880316 | 7mer-m8 | 14880309 | 14880329 | 147 | -15.75 |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000530609 | hsa-miR-200b-3p | 14878234 | 14878240 | 7mer-m8 | 14878233 | 14878253 | 141 | -10.9 |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000534686 | hsa-miR-200b-3p | 14880310 | 14880316 | 7mer-m8 | 14880309 | 14880329 | 147 | -15.75 |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000534686 | hsa-miR-200b-3p | 14878234 | 14878240 | 7mer-m8 | 14878233 | 14878253 | 141 | -10.9 |
CAediting_393 | chr1_1167164_+ | ENSG00000186104.9 | ENST00000525015 | hsa-miR-200b-3p | 14878234 | 14878240 | 7mer-m8 | 14878233 | 14878253 | 141 | -10.9 |
CAediting_1368054 | chr19_46709310_- | ENSG00000186104.9 | ENST00000334636 | hsa-miR-320e | 14877752 | 14877758 | 7mer-m8 | 14877751 | 14877768 | 148 | -18.39 |
CAediting_524911 | chr7_5495852_- | ENSG00000186104.9 | ENST00000334636 | hsa-miR-589-3p | 14877559 | 14877565 | 7mer-m8 | 14877558 | 14877582 | 145 | -14.05 |
CAediting_442554 | chr5_154685830_+ | ENSG00000186104.9 | ENST00000530609 | hsa-miR-1303 | 14880245 | 14880252 | 8mer-1a | 14880245 | 14880268 | 145 | -16.87 |
CAediting_442554 | chr5_154685830_+ | ENSG00000186104.9 | ENST00000534686 | hsa-miR-1303 | 14880245 | 14880252 | 8mer-1a | 14880245 | 14880268 | 145 | -16.87 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CYP2R1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CYP2R1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CYP2R1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CYP2R1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CYP2R1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CYP2R1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CYP2R1 | C1838657 | Vitamin D Hydroxylation-Deficient Rickets, Type 1B | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
CYP2R1 | C0005944 | Metabolic Bone Disorder | 1 | CTD_human |
CYP2R1 | C0023890 | Liver Cirrhosis | 1 | CTD_human |
CYP2R1 | C0029453 | Osteopenia | 1 | CTD_human |
CYP2R1 | C0042170 | Uveomeningoencephalitic Syndrome | 1 | GENOMICS_ENGLAND |
CYP2R1 | C0239946 | Fibrosis, Liver | 1 | CTD_human |