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| Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GBP4 (CAeditome ID:115361) |
Gene summary for GBP4 |
 Gene summary |
| Gene information | Gene symbol | GBP4 | Gene ID | 115361 |
| Gene name | guanylate binding protein 4 | |
| Synonyms | Mpa2 | |
| Cytomap | 1p22.2 | |
| Type of gene | protein-coding | |
| Description | guanylate-binding protein 4GBP-4GTP-binding protein 4guanine nucleotide-binding protein 4 | |
| Modification date | 20210518 | |
| UniProtAcc | Q96PP9 | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| GBP4 | GO:0042803 | Guanylate-binding protein 4 | 21151871 |
| GBP4 | GO:0005634 | Guanylate-binding protein 4 | 17266443 |
| GBP4 | GO:0005634 | Guanylate-binding protein 4 | 21151871 |
| GBP4 | GO:0005794 | Guanylate-binding protein 4 | 0000052 |
| GBP4 | GO:0005829 | Guanylate-binding protein 4 | 21151871 |
| GBP4 | GO:0005886 | Guanylate-binding protein 4 | 0000052 |
| GBP4 | GO:0048471 | Guanylate-binding protein 4 | 17266443 |
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RNA A-to-I events for GBP4 |
| RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure. |
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| RNA editing frequencies across 33 cancers of gene: ENSG00000162654.8 |
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| RNA A-to-I editing events in Cancer. |
| CAediting_78612(89182510, -), CAediting_78613(89182511, -), CAediting_78614(89182515, -), CAediting_78615(89182517, -), CAediting_78616(89182519, -), CAediting_78617(89182539, -), CAediting_78618(89182554, -), CAediting_78619(89182574, -), CAediting_78620(89182578, -), CAediting_78621(89182579, -), CAediting_78622(89182587, -), CAediting_78623(89182588, -), CAediting_78624(89182590, -), CAediting_78625(89182593, -), CAediting_78626(89182597, -), CAediting_78627(89182603, -), CAediting_78628(89182610, -), CAediting_78629(89182614, -), CAediting_78630(89182620, -), CAediting_78631(89182638, -), CAediting_78632(89182646, -), CAediting_78633(89182649, -), CAediting_78634(89182650, -), CAediting_78635(89182651, -), CAediting_78636(89182652, -), CAediting_78637(89182655, -), CAediting_78638(89182660, -), CAediting_78639(89182664, -), CAediting_78640(89182675, -), CAediting_78641(89182698, -), CAediting_78642(89182706, -), CAediting_78643(89182717, -), CAediting_78644(89182744, -), CAediting_78645(89182747, -), CAediting_78646(89182752, -), CAediting_78647(89183325, -), CAediting_78648(89183621, -), CAediting_78649(89183631, -), CAediting_78650(89183634, -), CAediting_78651(89183644, -), CAediting_78652(89183657, -), CAediting_78653(89183658, -), CAediting_78654(89183661, -), CAediting_78655(89183667, -), CAediting_78656(89183671, -), CAediting_78657(89183674, -), CAediting_78658(89183686, -), CAediting_78659(89183687, -), CAediting_78660(89183710, -), CAediting_78661(89183712, -), CAediting_78662(89183722, -), CAediting_78663(89183732, -), CAediting_78664(89183736, -), CAediting_78665(89183741, -), CAediting_78666(89183748, -), CAediting_78667(89183756, -), CAediting_78668(89183758, -), CAediting_78669(89183768, -), CAediting_78670(89183772, -), CAediting_78671(89183779, -), CAediting_78672(89183780, -), CAediting_78673(89183785, -), CAediting_78674(89183794, -), CAediting_78675(89183797, -), CAediting_78676(89183798, -), CAediting_78677(89183811, -), CAediting_78678(89183812, -), CAediting_78679(89183818, -), CAediting_78680(89183823, -), CAediting_78681(89183833, -), CAediting_78682(89183834, -), CAediting_78683(89183836, -), CAediting_78684(89183839, -), CAediting_78685(89183854, -), CAediting_78686(89183858, -), CAediting_78687(89183866, -), CAediting_78688(89183874, -), CAediting_78689(89183876, -), CAediting_78690(89183877, -), CAediting_78691(89183878, -), CAediting_78692(89184285, -), CAediting_78693(89184308, -), CAediting_78694(89184398, -), CAediting_78695(89184446, -), CAediting_78696(89184481, -), CAediting_78697(89184574, -), |
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RNA editing positional annotations for GBP4 using Annovar |
| Protein coding RNA editing(s). |
| CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| CAeditome ID | Position | Variant type |
| CAediting_78612 | chr1_89182510_- | ncRNA_exonic |
| CAediting_78613 | chr1_89182511_- | ncRNA_exonic |
| CAediting_78614 | chr1_89182515_- | ncRNA_exonic |
| CAediting_78615 | chr1_89182517_- | ncRNA_exonic |
| CAediting_78616 | chr1_89182519_- | ncRNA_exonic |
| CAediting_78617 | chr1_89182539_- | ncRNA_intronic |
| CAediting_78618 | chr1_89182554_- | ncRNA_intronic |
| CAediting_78619 | chr1_89182574_- | ncRNA_intronic |
| CAediting_78620 | chr1_89182578_- | ncRNA_intronic |
| CAediting_78621 | chr1_89182579_- | ncRNA_intronic |
| CAediting_78622 | chr1_89182587_- | ncRNA_intronic |
| CAediting_78623 | chr1_89182588_- | ncRNA_intronic |
| CAediting_78624 | chr1_89182590_- | ncRNA_intronic |
| CAediting_78625 | chr1_89182593_- | ncRNA_intronic |
| CAediting_78626 | chr1_89182597_- | ncRNA_intronic |
| CAediting_78627 | chr1_89182603_- | ncRNA_intronic |
| CAediting_78628 | chr1_89182610_- | ncRNA_intronic |
| CAediting_78629 | chr1_89182614_- | ncRNA_intronic |
| CAediting_78630 | chr1_89182620_- | ncRNA_intronic |
| CAediting_78631 | chr1_89182638_- | ncRNA_intronic |
| CAediting_78632 | chr1_89182646_- | ncRNA_intronic |
| CAediting_78633 | chr1_89182649_- | ncRNA_intronic |
| CAediting_78634 | chr1_89182650_- | ncRNA_intronic |
| CAediting_78635 | chr1_89182651_- | ncRNA_intronic |
| CAediting_78636 | chr1_89182652_- | ncRNA_intronic |
| CAediting_78637 | chr1_89182655_- | ncRNA_intronic |
| CAediting_78638 | chr1_89182660_- | ncRNA_intronic |
| CAediting_78639 | chr1_89182664_- | ncRNA_intronic |
| CAediting_78640 | chr1_89182675_- | ncRNA_intronic |
| CAediting_78641 | chr1_89182698_- | ncRNA_intronic |
| CAediting_78642 | chr1_89182706_- | ncRNA_intronic |
| CAediting_78643 | chr1_89182717_- | ncRNA_intronic |
| CAediting_78644 | chr1_89182744_- | ncRNA_intronic |
| CAediting_78645 | chr1_89182747_- | ncRNA_intronic |
| CAediting_78646 | chr1_89182752_- | ncRNA_intronic |
| CAediting_78647 | chr1_89183325_- | ncRNA_intronic |
| CAediting_78648 | chr1_89183621_- | ncRNA_intronic |
| CAediting_78649 | chr1_89183631_- | ncRNA_intronic |
| CAediting_78650 | chr1_89183634_- | ncRNA_intronic |
| CAediting_78651 | chr1_89183644_- | ncRNA_intronic |
| CAediting_78652 | chr1_89183657_- | ncRNA_intronic |
| CAediting_78653 | chr1_89183658_- | ncRNA_intronic |
| CAediting_78654 | chr1_89183661_- | ncRNA_intronic |
| CAediting_78655 | chr1_89183667_- | ncRNA_intronic |
| CAediting_78656 | chr1_89183671_- | ncRNA_intronic |
| CAediting_78657 | chr1_89183674_- | ncRNA_intronic |
| CAediting_78658 | chr1_89183686_- | ncRNA_intronic |
| CAediting_78659 | chr1_89183687_- | ncRNA_intronic |
| CAediting_78660 | chr1_89183710_- | ncRNA_intronic |
| CAediting_78661 | chr1_89183712_- | ncRNA_intronic |
| CAediting_78662 | chr1_89183722_- | ncRNA_intronic |
| CAediting_78663 | chr1_89183732_- | ncRNA_intronic |
| CAediting_78664 | chr1_89183736_- | ncRNA_intronic |
| CAediting_78665 | chr1_89183741_- | ncRNA_intronic |
| CAediting_78666 | chr1_89183748_- | ncRNA_intronic |
| CAediting_78667 | chr1_89183756_- | ncRNA_intronic |
| CAediting_78668 | chr1_89183758_- | ncRNA_intronic |
| CAediting_78669 | chr1_89183768_- | ncRNA_intronic |
| CAediting_78670 | chr1_89183772_- | ncRNA_intronic |
| CAediting_78671 | chr1_89183779_- | ncRNA_intronic |
| CAediting_78672 | chr1_89183780_- | ncRNA_intronic |
| CAediting_78673 | chr1_89183785_- | ncRNA_intronic |
| CAediting_78674 | chr1_89183794_- | ncRNA_intronic |
| CAediting_78675 | chr1_89183797_- | ncRNA_intronic |
| CAediting_78676 | chr1_89183798_- | ncRNA_intronic |
| CAediting_78677 | chr1_89183811_- | ncRNA_intronic |
| CAediting_78678 | chr1_89183812_- | ncRNA_intronic |
| CAediting_78679 | chr1_89183818_- | ncRNA_intronic |
| CAediting_78680 | chr1_89183823_- | ncRNA_intronic |
| CAediting_78681 | chr1_89183833_- | ncRNA_intronic |
| CAediting_78682 | chr1_89183834_- | ncRNA_intronic |
| CAediting_78683 | chr1_89183836_- | ncRNA_intronic |
| CAediting_78684 | chr1_89183839_- | ncRNA_intronic |
| CAediting_78685 | chr1_89183854_- | ncRNA_intronic |
| CAediting_78686 | chr1_89183858_- | ncRNA_intronic |
| CAediting_78687 | chr1_89183866_- | ncRNA_intronic |
| CAediting_78688 | chr1_89183874_- | ncRNA_intronic |
| CAediting_78689 | chr1_89183876_- | ncRNA_intronic |
| CAediting_78690 | chr1_89183877_- | ncRNA_intronic |
| CAediting_78691 | chr1_89183878_- | ncRNA_intronic |
| CAediting_78692 | chr1_89184285_- | ncRNA_intronic |
| CAediting_78693 | chr1_89184308_- | ncRNA_intronic |
| CAediting_78694 | chr1_89184398_- | ncRNA_intronic |
| CAediting_78695 | chr1_89184446_- | ncRNA_intronic |
| CAediting_78696 | chr1_89184481_- | ncRNA_intronic |
| CAediting_78697 | chr1_89184574_- | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| CAediting_78612 | chr1_89182510_- | SINE | Alu | AluYg6 |
| CAediting_78613 | chr1_89182511_- | SINE | Alu | AluYg6 |
| CAediting_78614 | chr1_89182515_- | SINE | Alu | AluYg6 |
| CAediting_78615 | chr1_89182517_- | SINE | Alu | AluYg6 |
| CAediting_78616 | chr1_89182519_- | SINE | Alu | AluYg6 |
| CAediting_78617 | chr1_89182539_- | SINE | Alu | AluYg6 |
| CAediting_78618 | chr1_89182554_- | SINE | Alu | AluYg6 |
| CAediting_78619 | chr1_89182574_- | SINE | Alu | AluYg6 |
| CAediting_78620 | chr1_89182578_- | SINE | Alu | AluYg6 |
| CAediting_78621 | chr1_89182579_- | SINE | Alu | AluYg6 |
| CAediting_78622 | chr1_89182587_- | SINE | Alu | AluYg6 |
| CAediting_78623 | chr1_89182588_- | SINE | Alu | AluYg6 |
| CAediting_78624 | chr1_89182590_- | SINE | Alu | AluYg6 |
| CAediting_78625 | chr1_89182593_- | SINE | Alu | AluYg6 |
| CAediting_78626 | chr1_89182597_- | SINE | Alu | AluYg6 |
| CAediting_78627 | chr1_89182603_- | SINE | Alu | AluYg6 |
| CAediting_78628 | chr1_89182610_- | SINE | Alu | AluYg6 |
| CAediting_78629 | chr1_89182614_- | SINE | Alu | AluYg6 |
| CAediting_78630 | chr1_89182620_- | SINE | Alu | AluYg6 |
| CAediting_78631 | chr1_89182638_- | SINE | Alu | AluYg6 |
| CAediting_78632 | chr1_89182646_- | SINE | Alu | AluYg6 |
| CAediting_78633 | chr1_89182649_- | SINE | Alu | AluYg6 |
| CAediting_78634 | chr1_89182650_- | SINE | Alu | AluYg6 |
| CAediting_78635 | chr1_89182651_- | SINE | Alu | AluYg6 |
| CAediting_78636 | chr1_89182652_- | SINE | Alu | AluYg6 |
| CAediting_78637 | chr1_89182655_- | SINE | Alu | AluYg6 |
| CAediting_78638 | chr1_89182660_- | SINE | Alu | AluYg6 |
| CAediting_78639 | chr1_89182664_- | SINE | Alu | AluYg6 |
| CAediting_78640 | chr1_89182675_- | SINE | Alu | AluYg6 |
| CAediting_78641 | chr1_89182698_- | SINE | Alu | AluYg6 |
| CAediting_78642 | chr1_89182706_- | SINE | Alu | AluYg6 |
| CAediting_78643 | chr1_89182717_- | SINE | Alu | AluYg6 |
| CAediting_78644 | chr1_89182744_- | SINE | Alu | AluYg6 |
| CAediting_78645 | chr1_89182747_- | SINE | Alu | AluYg6 |
| CAediting_78646 | chr1_89182752_- | SINE | Alu | AluYg6 |
| CAediting_78647 | chr1_89183325_- | LINE | L1 | L1PA15 |
| CAediting_78648 | chr1_89183621_- | SINE | Alu | AluJb |
| CAediting_78649 | chr1_89183631_- | SINE | Alu | AluJb |
| CAediting_78650 | chr1_89183634_- | SINE | Alu | AluJb |
| CAediting_78651 | chr1_89183644_- | SINE | Alu | AluJb |
| CAediting_78652 | chr1_89183657_- | SINE | Alu | AluJb |
| CAediting_78653 | chr1_89183658_- | SINE | Alu | AluJb |
| CAediting_78654 | chr1_89183661_- | SINE | Alu | AluJb |
| CAediting_78655 | chr1_89183667_- | SINE | Alu | AluJb |
| CAediting_78656 | chr1_89183671_- | SINE | Alu | AluJb |
| CAediting_78657 | chr1_89183674_- | SINE | Alu | AluJb |
| CAediting_78658 | chr1_89183686_- | SINE | Alu | AluJb |
| CAediting_78659 | chr1_89183687_- | SINE | Alu | AluJb |
| CAediting_78660 | chr1_89183710_- | SINE | Alu | AluJb |
| CAediting_78661 | chr1_89183712_- | SINE | Alu | AluJb |
| CAediting_78662 | chr1_89183722_- | SINE | Alu | AluJb |
| CAediting_78663 | chr1_89183732_- | SINE | Alu | AluJb |
| CAediting_78664 | chr1_89183736_- | SINE | Alu | AluJb |
| CAediting_78665 | chr1_89183741_- | SINE | Alu | AluJb |
| CAediting_78666 | chr1_89183748_- | SINE | Alu | AluJb |
| CAediting_78667 | chr1_89183756_- | SINE | Alu | AluJb |
| CAediting_78668 | chr1_89183758_- | SINE | Alu | AluJb |
| CAediting_78669 | chr1_89183768_- | SINE | Alu | AluJb |
| CAediting_78670 | chr1_89183772_- | SINE | Alu | AluJb |
| CAediting_78671 | chr1_89183779_- | SINE | Alu | AluJb |
| CAediting_78672 | chr1_89183780_- | SINE | Alu | AluJb |
| CAediting_78673 | chr1_89183785_- | SINE | Alu | AluJb |
| CAediting_78674 | chr1_89183794_- | SINE | Alu | AluJb |
| CAediting_78675 | chr1_89183797_- | SINE | Alu | AluJb |
| CAediting_78676 | chr1_89183798_- | SINE | Alu | AluJb |
| CAediting_78677 | chr1_89183811_- | SINE | Alu | AluJb |
| CAediting_78678 | chr1_89183812_- | SINE | Alu | AluJb |
| CAediting_78679 | chr1_89183818_- | SINE | Alu | AluJb |
| CAediting_78680 | chr1_89183823_- | SINE | Alu | AluJb |
| CAediting_78681 | chr1_89183833_- | SINE | Alu | AluJb |
| CAediting_78682 | chr1_89183834_- | SINE | Alu | AluJb |
| CAediting_78683 | chr1_89183836_- | SINE | Alu | AluJb |
| CAediting_78684 | chr1_89183839_- | SINE | Alu | AluJb |
| CAediting_78685 | chr1_89183854_- | SINE | Alu | AluJb |
| CAediting_78686 | chr1_89183858_- | SINE | Alu | AluJb |
| CAediting_78687 | chr1_89183866_- | SINE | Alu | AluJb |
| CAediting_78688 | chr1_89183874_- | SINE | Alu | AluJb |
| CAediting_78689 | chr1_89183876_- | SINE | Alu | AluJb |
| CAediting_78690 | chr1_89183877_- | SINE | Alu | AluJb |
| CAediting_78691 | chr1_89183878_- | SINE | Alu | AluJb |
| CAediting_78692 | chr1_89184285_- | LINE | L1 | L1PA15 |
| CAediting_78693 | chr1_89184308_- | LINE | L1 | L1PA15 |
| CAediting_78694 | chr1_89184398_- | LINE | L1 | L1PA15 |
| CAediting_78695 | chr1_89184446_- | LINE | L1 | L1PA15 |
| CAediting_78696 | chr1_89184481_- | LINE | L1 | L1PA15 |
| CAediting_78697 | chr1_89184574_- | LINE | L1 | L1PA15 |
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RNA A-to-I editing events in the alternative splicing sites for GBP4 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| IR | CAediting_78617 | chr1_89182539_- | 89182525:89182547 | 3SS | 0+12i | ATCGCGCCACTGCACTCCAGCCT | 0.94 | ATCGCGCCGCTGCACTCCAGCCT | 1.58 |
| IR | CAediting_78688 | chr1_89183874_- | 89183870:89183892 | 3SS | 0+2i | GTTTTTGTTTTTTGAAACAGGGT | 8.98 | GTTTTTGTTTTTTGAAACGGGGT | 1.02 |
| IR | CAediting_78689 | chr1_89183876_- | 89183870:89183892 | 3SS | 0+4i | GTTTTTGTTTTTTGAAACAGGGT | 8.98 | GTTTTTGTTTTTTGAAGCAGGGT | 5.98 |
| IR | CAediting_78690 | chr1_89183877_- | 89183870:89183892 | 3SS | 0+5i | GTTTTTGTTTTTTGAAACAGGGT | 8.98 | GTTTTTGTTTTTTGAGACAGGGT | 3.26 |
| IR | CAediting_78691 | chr1_89183878_- | 89183870:89183892 | 3SS | 0+6i | GTTTTTGTTTTTTGAAACAGGGT | 8.98 | GTTTTTGTTTTTTGGAACAGGGT | 8.1 |
| Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000162654.8.GBP4. |
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| Correlation between RNA A-to-I editing and PSI for ENSG00000162654.8.GBP4. |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GBP4 |
| Differential gene expressions between RNA A-to-I edited and non-edited tumor samples. * The grey color means N/A. |
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| Correlation between RNA A-to-I editing and gene expression. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
BLCA.CAediting_78671.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78651.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78671.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78677.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78684.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78687.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78688.ENSG00000162654.GBP4.png  |
BRCA.CAediting_78690.ENSG00000162654.GBP4.png  |
CESC.CAediting_78671.ENSG00000162654.GBP4.png  |
COAD.CAediting_78651.ENSG00000162654.GBP4.png  |
COAD.CAediting_78687.ENSG00000162654.GBP4.png  |
COAD.CAediting_78688.ENSG00000162654.GBP4.png  |
COAD.CAediting_78690.ENSG00000162654.GBP4.png  |
GBM.CAediting_78651.ENSG00000162654.GBP4.png  |
GBM.CAediting_78684.ENSG00000162654.GBP4.png  |
HNSC.CAediting_78671.ENSG00000162654.GBP4.png  |
HNSC.CAediting_78687.ENSG00000162654.GBP4.png  |
HNSC.CAediting_78688.ENSG00000162654.GBP4.png  |
KIRC.CAediting_78642.ENSG00000162654.GBP4.png  |
KIRC.CAediting_78651.ENSG00000162654.GBP4.png  |
KIRC.CAediting_78690.ENSG00000162654.GBP4.png  |
LGG.CAediting_78671.ENSG00000162654.GBP4.png  |
LGG.CAediting_78687.ENSG00000162654.GBP4.png  |
LGG.CAediting_78690.ENSG00000162654.GBP4.png  |
LUAD.CAediting_78687.ENSG00000162654.GBP4.png  |
LUAD.CAediting_78688.ENSG00000162654.GBP4.png  |
LUAD.CAediting_78690.ENSG00000162654.GBP4.png  |
LUSC.CAediting_78671.ENSG00000162654.GBP4.png  |
LUSC.CAediting_78687.ENSG00000162654.GBP4.png  |
LUSC.CAediting_78690.ENSG00000162654.GBP4.png  |
OV.CAediting_78671.ENSG00000162654.GBP4.png  |
OV.CAediting_78684.ENSG00000162654.GBP4.png  |
OV.CAediting_78687.ENSG00000162654.GBP4.png  |
OV.CAediting_78690.ENSG00000162654.GBP4.png  |
READ.CAediting_78688.ENSG00000162654.GBP4.png  |
READ.CAediting_78690.ENSG00000162654.GBP4.png  |
SKCM.CAediting_78671.ENSG00000162654.GBP4.png  |
SKCM.CAediting_78687.ENSG00000162654.GBP4.png  |
STAD.CAediting_78664.ENSG00000162654.GBP4.png  |
STAD.CAediting_78687.ENSG00000162654.GBP4.png  |
STAD.CAediting_78688.ENSG00000162654.GBP4.png  |
THCA.CAediting_78671.ENSG00000162654.GBP4.png  |
THCA.CAediting_78677.ENSG00000162654.GBP4.png  |
THCA.CAediting_78687.ENSG00000162654.GBP4.png  |
THCA.CAediting_78688.ENSG00000162654.GBP4.png  |
THCA.CAediting_78690.ENSG00000162654.GBP4.png  |
UCEC.CAediting_78690.ENSG00000162654.GBP4.png  |
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Protein coding region RNA A-to-I editings for GBP4 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for GBP4 |
| **If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for GBP4 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000355754.6 | protein_coding |  |  |
| ENST00000481397.1 | processed_transcript |  |  |
| RNA A-to-I editing in RNA structures for Minimum free energy (MFE). |
| CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| CAediting_78612 | ENST00000355754.6 | chr1_89182510_- | -1837.30 | -1830.90 | -1947.20 |
| CAediting_78613 | ENST00000355754.6 | chr1_89182511_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78614 | ENST00000355754.6 | chr1_89182515_- | -1830.10 | -1830.90 | -1947.20 |
| CAediting_78615 | ENST00000355754.6 | chr1_89182517_- | -1830.10 | -1830.90 | -1947.20 |
| CAediting_78616 | ENST00000355754.6 | chr1_89182519_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78617 | ENST00000355754.6 | chr1_89182539_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78618 | ENST00000355754.6 | chr1_89182554_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78619 | ENST00000355754.6 | chr1_89182574_- | -1834.80 | -1830.90 | -1947.20 |
| CAediting_78620 | ENST00000355754.6 | chr1_89182578_- | -1837.60 | -1830.90 | -1947.20 |
| CAediting_78621 | ENST00000355754.6 | chr1_89182579_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78622 | ENST00000355754.6 | chr1_89182587_- | -1831.60 | -1830.90 | -1947.20 |
| CAediting_78623 | ENST00000355754.6 | chr1_89182588_- | -1837.80 | -1830.90 | -1947.20 |
| CAediting_78624 | ENST00000355754.6 | chr1_89182590_- | -1833.00 | -1830.90 | -1947.20 |
| CAediting_78625 | ENST00000355754.6 | chr1_89182593_- | -1834.70 | -1830.90 | -1947.20 |
| CAediting_78626 | ENST00000355754.6 | chr1_89182597_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78627 | ENST00000355754.6 | chr1_89182603_- | -1837.80 | -1830.90 | -1947.20 |
| CAediting_78628 | ENST00000355754.6 | chr1_89182610_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78629 | ENST00000355754.6 | chr1_89182614_- | -1830.20 | -1830.90 | -1947.20 |
| CAediting_78630 | ENST00000355754.6 | chr1_89182620_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78631 | ENST00000355754.6 | chr1_89182638_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78632 | ENST00000355754.6 | chr1_89182646_- | -1830.50 | -1830.90 | -1947.20 |
| CAediting_78633 | ENST00000355754.6 | chr1_89182649_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78634 | ENST00000355754.6 | chr1_89182650_- | -1831.00 | -1830.90 | -1947.20 |
| CAediting_78635 | ENST00000355754.6 | chr1_89182651_- | -1831.00 | -1830.90 | -1947.20 |
| CAediting_78636 | ENST00000355754.6 | chr1_89182652_- | -1831.00 | -1830.90 | -1947.20 |
| CAediting_78637 | ENST00000355754.6 | chr1_89182655_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78638 | ENST00000355754.6 | chr1_89182660_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78639 | ENST00000355754.6 | chr1_89182664_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78640 | ENST00000355754.6 | chr1_89182675_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78641 | ENST00000355754.6 | chr1_89182698_- | -1830.30 | -1830.90 | -1947.20 |
| CAediting_78642 | ENST00000355754.6 | chr1_89182706_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78643 | ENST00000355754.6 | chr1_89182717_- | -1834.50 | -1830.90 | -1947.20 |
| CAediting_78644 | ENST00000355754.6 | chr1_89182744_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78645 | ENST00000355754.6 | chr1_89182747_- | -1830.20 | -1830.90 | -1947.20 |
| CAediting_78646 | ENST00000355754.6 | chr1_89182752_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78647 | ENST00000355754.6 | chr1_89183325_- | -1830.70 | -1830.90 | -1947.20 |
| CAediting_78648 | ENST00000355754.6 | chr1_89183621_- | -1829.60 | -1830.90 | -1947.20 |
| CAediting_78649 | ENST00000355754.6 | chr1_89183631_- | -1837.60 | -1830.90 | -1947.20 |
| CAediting_78650 | ENST00000355754.6 | chr1_89183634_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78651 | ENST00000355754.6 | chr1_89183644_- | -1837.10 | -1830.90 | -1947.20 |
| CAediting_78652 | ENST00000355754.6 | chr1_89183657_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78653 | ENST00000355754.6 | chr1_89183658_- | -1835.10 | -1830.90 | -1947.20 |
| CAediting_78654 | ENST00000355754.6 | chr1_89183661_- | -1831.60 | -1830.90 | -1947.20 |
| CAediting_78655 | ENST00000355754.6 | chr1_89183667_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78656 | ENST00000355754.6 | chr1_89183671_- | -1833.50 | -1830.90 | -1947.20 |
| CAediting_78657 | ENST00000355754.6 | chr1_89183674_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78658 | ENST00000355754.6 | chr1_89183686_- | -1837.50 | -1830.90 | -1947.20 |
| CAediting_78659 | ENST00000355754.6 | chr1_89183687_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78660 | ENST00000355754.6 | chr1_89183710_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78661 | ENST00000355754.6 | chr1_89183712_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78662 | ENST00000355754.6 | chr1_89183722_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78663 | ENST00000355754.6 | chr1_89183732_- | -1831.00 | -1830.90 | -1947.20 |
| CAediting_78664 | ENST00000355754.6 | chr1_89183736_- | -1837.10 | -1830.90 | -1947.20 |
| CAediting_78665 | ENST00000355754.6 | chr1_89183741_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78666 | ENST00000355754.6 | chr1_89183748_- | -1834.30 | -1830.90 | -1947.20 |
| CAediting_78667 | ENST00000355754.6 | chr1_89183756_- | -1830.20 | -1830.90 | -1947.20 |
| CAediting_78668 | ENST00000355754.6 | chr1_89183758_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78669 | ENST00000355754.6 | chr1_89183768_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78670 | ENST00000355754.6 | chr1_89183772_- | -1834.40 | -1830.90 | -1947.20 |
| CAediting_78671 | ENST00000355754.6 | chr1_89183779_- | -1837.60 | -1830.90 | -1947.20 |
| CAediting_78672 | ENST00000355754.6 | chr1_89183780_- | -1830.20 | -1830.90 | -1947.20 |
| CAediting_78673 | ENST00000355754.6 | chr1_89183785_- | -1834.90 | -1830.90 | -1947.20 |
| CAediting_78674 | ENST00000355754.6 | chr1_89183794_- | -1833.50 | -1830.90 | -1947.20 |
| CAediting_78675 | ENST00000355754.6 | chr1_89183797_- | -1833.50 | -1830.90 | -1947.20 |
| CAediting_78676 | ENST00000355754.6 | chr1_89183798_- | -1831.60 | -1830.90 | -1947.20 |
| CAediting_78677 | ENST00000355754.6 | chr1_89183811_- | -1833.10 | -1830.90 | -1947.20 |
| CAediting_78678 | ENST00000355754.6 | chr1_89183812_- | -1830.60 | -1830.90 | -1947.20 |
| CAediting_78679 | ENST00000355754.6 | chr1_89183818_- | -1829.50 | -1830.90 | -1947.20 |
| CAediting_78680 | ENST00000355754.6 | chr1_89183823_- | -1827.50 | -1830.90 | -1947.20 |
| CAediting_78681 | ENST00000355754.6 | chr1_89183833_- | -1832.30 | -1830.90 | -1947.20 |
| CAediting_78682 | ENST00000355754.6 | chr1_89183834_- | -1836.50 | -1830.90 | -1947.20 |
| CAediting_78683 | ENST00000355754.6 | chr1_89183836_- | -1836.30 | -1830.90 | -1947.20 |
| CAediting_78684 | ENST00000355754.6 | chr1_89183839_- | -1837.50 | -1830.90 | -1947.20 |
| CAediting_78685 | ENST00000355754.6 | chr1_89183854_- | -1830.20 | -1830.90 | -1947.20 |
| CAediting_78686 | ENST00000355754.6 | chr1_89183858_- | -1836.30 | -1830.90 | -1947.20 |
| CAediting_78687 | ENST00000355754.6 | chr1_89183866_- | -1836.30 | -1830.90 | -1947.20 |
| CAediting_78688 | ENST00000355754.6 | chr1_89183874_- | -1837.10 | -1830.90 | -1947.20 |
| CAediting_78689 | ENST00000355754.6 | chr1_89183876_- | -1831.20 | -1830.90 | -1947.20 |
| CAediting_78690 | ENST00000355754.6 | chr1_89183877_- | -1837.30 | -1830.90 | -1947.20 |
| CAediting_78691 | ENST00000355754.6 | chr1_89183878_- | -1830.00 | -1830.90 | -1947.20 |
| CAediting_78692 | ENST00000355754.6 | chr1_89184285_- | -1831.10 | -1830.90 | -1947.20 |
| CAediting_78693 | ENST00000355754.6 | chr1_89184308_- | -1837.20 | -1830.90 | -1947.20 |
| CAediting_78694 | ENST00000355754.6 | chr1_89184398_- | -1832.80 | -1830.90 | -1947.20 |
| CAediting_78695 | ENST00000355754.6 | chr1_89184446_- | -1831.90 | -1830.90 | -1947.20 |
| CAediting_78696 | ENST00000355754.6 | chr1_89184481_- | -1830.90 | -1830.90 | -1947.20 |
| CAediting_78697 | ENST00000355754.6 | chr1_89184574_- | -1831.00 | -1830.90 | -1947.20 |
| CAediting_78612 | ENST00000481397.1 | chr1_89182510_- | -110.00 | -110.00 | -115.30 |
| CAediting_78613 | ENST00000481397.1 | chr1_89182511_- | -112.00 | -110.00 | -115.30 |
| CAediting_78614 | ENST00000481397.1 | chr1_89182515_- | -110.60 | -110.00 | -115.30 |
| CAediting_78615 | ENST00000481397.1 | chr1_89182517_- | -112.60 | -110.00 | -115.30 |
| CAediting_78616 | ENST00000481397.1 | chr1_89182519_- | -110.30 | -110.00 | -115.30 |
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Relation with ADAR for GBP4 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| STAD | CAediting_78619 | chr1_89182574_- | . | . | . | . | 0.0100523655989351 | 0.270039922944275 |
| OV | CAediting_78619 | chr1_89182574_- | . | . | . | . | 0.0131860865460164 | 0.236760476660941 |
| KIRC | CAediting_78620 | chr1_89182578_- | . | . | . | . | 7.00833370315707e-06 | 0.21026910877061 |
| ESCA | CAediting_78630 | chr1_89182620_- | . | . | . | . | 0.0192105404781602 | 0.237403341326202 |
| BLCA | CAediting_78642 | chr1_89182706_- | 0.000442070914236888 | 0.251136371070715 | . | . | . | . |
| LGG | CAediting_78642 | chr1_89182706_- | . | . | . | . | 0.0382688202869956 | 0.198764917077909 |
| BRCA | CAediting_78642 | chr1_89182706_- | 0.000211594276498676 | 0.148859905666814 | . | . | . | . |
| LIHC | CAediting_78642 | chr1_89182706_- | 0.000699900753937914 | 0.284120719272282 | . | . | . | . |
| CESC | CAediting_78642 | chr1_89182706_- | 7.35129244953569e-05 | 0.280712692551375 | . | . | . | . |
| HNSC | CAediting_78642 | chr1_89182706_- | 0.0470046207881937 | 0.126773505205892 | . | . | . | . |
| STAD | CAediting_78642 | chr1_89182706_- | . | . | . | . | 0.00715068057460695 | 0.162157881765165 |
| OV | CAediting_78642 | chr1_89182706_- | 0.0127511156280808 | 0.153692191390042 | . | . | . | . |
| PCPG | CAediting_78642 | chr1_89182706_- | 0.00204727537242183 | 0.39673591742214 | . | . | . | . |
| SARC | CAediting_78642 | chr1_89182706_- | 0.01498171094996 | 0.214626342099122 | . | . | . | . |
| BLCA | CAediting_78651 | chr1_89183644_- | 4.7238127041612e-06 | 0.29720117684209 | . | . | . | . |
| BRCA | CAediting_78651 | chr1_89183644_- | 8.0550045030646e-18 | 0.285361901409931 | . | . | . | . |
| LIHC | CAediting_78651 | chr1_89183644_- | 3.22659522919408e-05 | 0.307042741102965 | . | . | . | . |
| CESC | CAediting_78651 | chr1_89183644_- | 2.49666846738864e-06 | 0.316161050445226 | . | . | . | . |
| LUSC | CAediting_78651 | chr1_89183644_- | 3.12658238751164e-05 | 0.214391028080789 | . | . | . | . |
| GBM | CAediting_78651 | chr1_89183644_- | 0.00586336313246383 | 0.277832320440724 | . | . | . | . |
| PRAD | CAediting_78651 | chr1_89183644_- | . | . | 0.00219344618732176 | 0.182634806163601 | . | . |
| STAD | CAediting_78651 | chr1_89183644_- | 0.00679694054568439 | 0.154179909719308 | . | . | . | . |
| KIRC | CAediting_78651 | chr1_89183644_- | 0.000292391633918616 | 0.160683901001218 | . | . | 0.00620660290713494 | 0.121749143327943 |
| OV | CAediting_78651 | chr1_89183644_- | 0.00286975495384753 | 0.176300678677869 | . | . | . | . |
| SKCM | CAediting_78651 | chr1_89183644_- | 0.000334113001960481 | 0.206431927260291 | . | . | . | . |
| SARC | CAediting_78651 | chr1_89183644_- | 0.00694858966633075 | 0.223260091987156 | . | . | . | . |
| BLCA | CAediting_78658 | chr1_89183686_- | 0.00213701065430053 | 0.191441127894866 | 0.000367137636475423 | 0.221413865796766 | . | . |
| LGG | CAediting_78658 | chr1_89183686_- | . | . | . | . | 0.0297314727338754 | 0.146924407581969 |
| BRCA | CAediting_78658 | chr1_89183686_- | 0.00187352586515535 | 0.103921871363991 | . | . | . | . |
| LIHC | CAediting_78658 | chr1_89183686_- | . | . | 0.035981144803836 | 0.160980476119583 | . | . |
| CESC | CAediting_78658 | chr1_89183686_- | 1.64775909263099e-05 | 0.282884179659975 | 0.00537776960497806 | 0.184991947025859 | . | . |
| LUAD | CAediting_78658 | chr1_89183686_- | . | . | 0.00324958723911997 | 0.139227133702174 | . | . |
| LUSC | CAediting_78658 | chr1_89183686_- | 0.0137600787751082 | 0.122328667581231 | 0.00113750701281094 | 0.161137848505303 | . | . |
| GBM | CAediting_78658 | chr1_89183686_- | 0.042423970756202 | 0.192119428498915 | . | . | . | . |
| PRAD | CAediting_78658 | chr1_89183686_- | . | . | 0.000649053813733803 | 0.200826000774323 | . | . |
| HNSC | CAediting_78658 | chr1_89183686_- | . | . | 7.30610039724709e-06 | 0.238467913711763 | . | . |
| STAD | CAediting_78658 | chr1_89183686_- | . | . | 1.5425393507859e-08 | 0.299072196720291 | . | . |
| KIRC | CAediting_78658 | chr1_89183686_- | . | . | 0.014925382572114 | 0.107422771441865 | 0.000766486255806689 | 0.148093042283845 |
| UCEC | CAediting_78658 | chr1_89183686_- | . | . | 0.000381011531143163 | 0.259198775245235 | . | . |
| ESCA | CAediting_78658 | chr1_89183686_- | 0.0163739250160945 | 0.204784163307902 | . | . | . | . |
| LAML | CAediting_78658 | chr1_89183686_- | . | . | 0.000326971193177359 | 0.431953275774816 | . | . |
| OV | CAediting_78658 | chr1_89183686_- | 0.0364073854427572 | 0.120662020989701 | 0.000915893821798449 | 0.190128053864981 | . | . |
| PAAD | CAediting_78658 | chr1_89183686_- | 0.00645316905896573 | 0.22371201978933 | 0.00467481805093352 | 0.23208815939816 | . | . |
| PCPG | CAediting_78658 | chr1_89183686_- | 0.000874632252669637 | 0.317111372584702 | . | . | . | . |
| SKCM | CAediting_78658 | chr1_89183686_- | . | . | 2.93436300862695e-13 | 0.387929761612613 | . | . |
| MESO | CAediting_78658 | chr1_89183686_- | . | . | 0.00948458607831599 | 0.335065242306483 | . | . |
| SARC | CAediting_78658 | chr1_89183686_- | . | . | 2.10755741834901e-06 | 0.363737037005828 | . | . |
| TGCT | CAediting_78658 | chr1_89183686_- | . | . | 0.00050266069027191 | 0.324914419210537 | . | . |
| CESC | CAediting_78661 | chr1_89183712_- | 0.0322400347590244 | 0.21434155387924 | . | . | . | . |
| LUSC | CAediting_78661 | chr1_89183712_- | 0.0216640494135092 | 0.192588084397448 | . | . | . | . |
| LGG | CAediting_78664 | chr1_89183736_- | . | . | . | . | 0.038977044489048 | 0.229872408402047 |
| KIRC | CAediting_78664 | chr1_89183736_- | . | . | . | . | 0.00068495466713808 | 0.169081769366323 |
| LUAD | CAediting_78665 | chr1_89183741_- | 0.0334980250195287 | 0.177930705607984 | . | . | . | . |
| BLCA | CAediting_78671 | chr1_89183779_- | 0.0208075152036216 | 0.138836670170446 | . | . | . | . |
| BRCA | CAediting_78671 | chr1_89183779_- | 5.85673922992187e-06 | 0.151402883669632 | . | . | . | . |
| CESC | CAediting_78671 | chr1_89183779_- | 0.0143454081702469 | 0.165260522054753 | . | . | . | . |
| THCA | CAediting_78671 | chr1_89183779_- | 0.00196831362114277 | 0.158703754052904 | . | . | . | . |
| KIRC | CAediting_78671 | chr1_89183779_- | 0.0363014882433124 | 0.0928220701247641 | . | . | . | . |
| SKCM | CAediting_78671 | chr1_89183779_- | 0.0134396521932489 | 0.137419923549597 | . | . | . | . |
| TGCT | CAediting_78671 | chr1_89183779_- | . | . | 0.00146168979569554 | 0.297197743828663 | . | . |
| BLCA | CAediting_78672 | chr1_89183780_- | . | . | . | . | 0.0454658388592146 | 0.161446623404729 |
| LIHC | CAediting_78672 | chr1_89183780_- | 0.0141742718039417 | 0.242222016294332 | . | . | . | . |
| STAD | CAediting_78672 | chr1_89183780_- | . | . | 0.0312022867793747 | 0.133917260282372 | . | . |
| BLCA | CAediting_78684 | chr1_89183839_- | 1.15995547201885e-05 | 0.30457527340623 | . | . | . | . |
| LGG | CAediting_78684 | chr1_89183839_- | . | . | . | . | 0.0146214580415257 | 0.18123444195066 |
| BRCA | CAediting_78684 | chr1_89183839_- | 7.35899111957375e-09 | 0.212951267952972 | . | . | . | . |
| CESC | CAediting_78684 | chr1_89183839_- | 0.0107500105895154 | 0.183238061345914 | . | . | . | . |
| LUAD | CAediting_78684 | chr1_89183839_- | 0.0166715792376926 | 0.12716566456826 | . | . | . | . |
| LUSC | CAediting_78684 | chr1_89183839_- | 0.0218644008890891 | 0.125052529810677 | . | . | . | . |
| ESCA | CAediting_78684 | chr1_89183839_- | 0.0311584702567677 | 0.184226813025884 | . | . | . | . |
| BLCA | CAediting_78687 | chr1_89183866_- | 0.00825489511943403 | 0.168411064032651 | . | . | . | . |
| BRCA | CAediting_78687 | chr1_89183866_- | 0.0129628028092889 | 0.0883159264480737 | . | . | . | . |
| LUAD | CAediting_78687 | chr1_89183866_- | 0.00904196291976282 | 0.131694161645323 | . | . | . | . |
| PRAD | CAediting_78687 | chr1_89183866_- | . | . | . | . | 0.0299000352514478 | 0.154366754516708 |
| LAML | CAediting_78687 | chr1_89183866_- | 0.0344947747124425 | 0.232404864522545 | . | . | . | . |
| SKCM | CAediting_78687 | chr1_89183866_- | 0.0229491558001612 | 0.132843318181067 | . | . | . | . |
| SARC | CAediting_78687 | chr1_89183866_- | 0.014180184920704 | 0.217181944428934 | . | . | . | . |
| BLCA | CAediting_78688 | chr1_89183874_- | 0.0268826485963717 | 0.156906204231774 | . | . | . | . |
| BRCA | CAediting_78688 | chr1_89183874_- | 0.00170567035955534 | 0.121707375785823 | . | . | . | . |
| CESC | CAediting_78688 | chr1_89183874_- | 0.0032528376244103 | 0.214131107970738 | . | . | . | . |
| COAD | CAediting_78688 | chr1_89183874_- | . | . | . | . | 0.0160915910309323 | 0.181208419117129 |
| STAD | CAediting_78688 | chr1_89183874_- | 0.0224578526252807 | 0.126395937366573 | . | . | . | . |
| THCA | CAediting_78688 | chr1_89183874_- | 0.0294589170048551 | 0.135583998066204 | . | . | . | . |
| BLCA | CAediting_78690 | chr1_89183877_- | 0.0470132656225198 | 0.143534435238123 | . | . | . | . |
| BRCA | CAediting_78690 | chr1_89183877_- | 0.00542088513787337 | 0.109550806724702 | . | . | . | . |
| KIRC | CAediting_78690 | chr1_89183877_- | 0.00406904504880362 | 0.131309151064119 | . | . | . | . |
| SARC | CAediting_78690 | chr1_89183877_- | . | . | . | . | 0.0446292886165569 | 0.196411450134786 |
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Relation with cancer stages for GBP4 |
| Correlation between Cancer stages and RNA editing frequency |
| Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
| BLCA | pathologic_stage | CAediting_78620 | chr1_89182578_- | 0.0191527906795896 | 0.185622899668362 |
| BLCA | pathologic_stage | CAediting_78658 | chr1_89183686_- | 0.0269718063401341 | 0.138800702123116 |
| BLCA | pathologic_stage | CAediting_78672 | chr1_89183780_- | 0.0055422878100841 | 0.222514720243513 |
| BLCA | pathologic_stage | CAediting_78690 | chr1_89183877_- | 0.00534983003360861 | 0.200270239152754 |
| BRCA | pathologic_stage | CAediting_78649 | chr1_89183631_- | 0.015895282785626 | -0.220642043174907 |
| BRCA | pathologic_stage | CAediting_78658 | chr1_89183686_- | 0.011452265420971 | 0.0854476149098585 |
| CESC | clinical_stage | CAediting_78687 | chr1_89183866_- | 0.0166358556206908 | 0.168328177287653 |
| ESCA | clinical_stage | CAediting_78661 | chr1_89183712_- | 0.0341571124225386 | -0.51556206901789 |
| HNSC | clinical_stage | CAediting_78630 | chr1_89182620_- | 0.0191250424832158 | 0.304282019499937 |
| HNSC | clinical_stage | CAediting_78672 | chr1_89183780_- | 0.0374459112827998 | 0.14439546235588 |
| HNSC | pathologic_stage | CAediting_78630 | chr1_89182620_- | 0.0469771461113527 | 0.253310484101333 |
| HNSC | pathologic_stage | CAediting_78632 | chr1_89182646_- | 0.0227947727013961 | 0.282120166077895 |
| HNSC | pathologic_stage | CAediting_78642 | chr1_89182706_- | 0.00510062665276012 | 0.18948670439576 |
| HNSC | pathologic_stage | CAediting_78672 | chr1_89183780_- | 0.00102519390345117 | 0.244096362802214 |
| HNSC | pathologic_stage | CAediting_78684 | chr1_89183839_- | 0.0426330400226399 | 0.133223642895225 |
| HNSC | pathologic_stage | CAediting_78690 | chr1_89183877_- | 0.0217298107857169 | 0.156468473721834 |
| KIRC | pathologic_stage | CAediting_78642 | chr1_89182706_- | 0.00150166796191395 | 0.155531171683227 |
| KIRC | pathologic_stage | CAediting_78649 | chr1_89183631_- | 0.0470550989462711 | 0.212303202012503 |
| KIRC | pathologic_stage | CAediting_78651 | chr1_89183644_- | 9.16845503007998e-05 | -0.173687805407534 |
| KIRC | pathologic_stage | CAediting_78658 | chr1_89183686_- | 0.00037742819986108 | -0.156692063596185 |
| KIRC | pathologic_stage | CAediting_78671 | chr1_89183779_- | 0.00280064389035524 | 0.132479279400862 |
| KIRC | pathologic_stage | CAediting_78686 | chr1_89183858_- | 0.0300788305808903 | 0.19333421891039 |
| KIRC | pathologic_stage | CAediting_78687 | chr1_89183866_- | 0.0045096597063706 | 0.128758230896279 |
| LIHC | pathologic_stage | CAediting_78672 | chr1_89183780_- | 0.0324907350825306 | 0.225637424620359 |
| LIHC | pathologic_stage | CAediting_78687 | chr1_89183866_- | 0.0448810244187705 | 0.184236003900619 |
| LIHC | pathologic_stage | CAediting_78688 | chr1_89183874_- | 0.0326546103178642 | 0.248658800268083 |
| LIHC | pathologic_stage | CAediting_78690 | chr1_89183877_- | 0.0102146136141373 | 0.309522608138497 |
| LUAD | pathologic_stage | CAediting_78684 | chr1_89183839_- | 0.0320549314636967 | 0.114783239574919 |
| LUAD | pathologic_stage | CAediting_78688 | chr1_89183874_- | 0.038114538919552 | 0.112349645693737 |
| LUSC | pathologic_stage | CAediting_78688 | chr1_89183874_- | 0.00936507460418668 | 0.153143102274317 |
| PAAD | pathologic_stage | CAediting_78642 | chr1_89182706_- | 0.0266016113011878 | 0.215384034418688 |
| PAAD | pathologic_stage | CAediting_78658 | chr1_89183686_- | 0.0336624878628446 | -0.175329462483581 |
| READ | pathologic_stage | CAediting_78671 | chr1_89183779_- | 0.0150910014151173 | -0.289428170731874 |
| STAD | pathologic_stage | CAediting_78642 | chr1_89182706_- | 0.0479320232848693 | 0.122325040786539 |
| TGCT | clinical_stage | CAediting_78651 | chr1_89183644_- | 0.037446846243563 | -0.267091024515219 |
| THCA | pathologic_stage | CAediting_78688 | chr1_89183874_- | 0.00242645490644545 | -0.188740207174898 |
| UCEC | clinical_stage | CAediting_78651 | chr1_89183644_- | 0.0261985923841096 | 0.176323065749824 |
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Relation with survival for GBP4 |
| Correlation between RNA editing and survival |
| Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
| BRCA | CAediting_78684 | chr1_89183839_- | 0.0126831360750946 | 0.0323513 | 0.0551871 |
| LIHC | CAediting_78684 | chr1_89183839_- | 0.0125621273474891 | 0.013407 | 113.421 |
| HNSC | CAediting_78687 | chr1_89183866_- | 0.0221023372697716 | 0.0149011 | 7.88925 |
| ESCA | CAediting_78642 | chr1_89182706_- | 0.0294334529107344 | 0.0264438 | 69.3865 |
| SKCM | CAediting_78632 | chr1_89182646_- | 0.00463440191851061 | 0.0447665 | 7.02514e-05 |
| SKCM | CAediting_78658 | chr1_89183686_- | 0.0345106621985246 | 0.0490959 | 0.217399 |
| SARC | CAediting_78664 | chr1_89183736_- | 0.00942290185224748 | 0.042559 | 14773.1 |
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RelatedDrugs for GBP4 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.8 2021-01-03) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GBP4 |
| Diseases associated with this gene. (DisGeNet 7.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| GBP4 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
