Home

Download

Statistics

Examples

Help

Contact

Editing gene: ZNF554 (CAeditome ID:115196)

Gene summary for ZNF554

Gene summary

Gene information	Gene symbol	ZNF554
	Gene ID	115196
	Gene name	zinc finger protein 554
	Synonyms	-
	Cytomap	19p13.3
	Type of gene	protein-coding
	Description	zinc finger protein 554
	Modification date	20210518
	UniProtAcc	Q86TJ5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
ZNF554	GO:0005654	Zinc finger protein 554	0000052
ZNF554	GO:0005730	Zinc finger protein 554	0000052

Top

RNA A-to-I events for ZNF554

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000172006.10

RNA A-to-I editing events in Cancer.

CAediting_1274259(2826000, +), CAediting_1274260(2826923, +), CAediting_1274261(2826924, +), CAediting_1274262(2828487, +), CAediting_1274263(2828547, +), CAediting_1274264(2828556, +), CAediting_1274265(2828573, +), CAediting_1274266(2829117, +), CAediting_1274267(2829180, +), CAediting_1274268(2829181, +), CAediting_1274269(2829182, +), CAediting_1274270(2829239, +), CAediting_1274271(2829291, +), CAediting_1274272(2829451, +), CAediting_1274273(2829582, +), CAediting_1274274(2829597, +), CAediting_1274275(2829602, +), CAediting_1274276(2829616, +), CAediting_1274277(2829625, +), CAediting_1274278(2830142, +), CAediting_1274279(2830619, +), CAediting_1274280(2830738, +), CAediting_1274281(2830947, +), CAediting_1274282(2831346, +), CAediting_1274283(2835024, +), CAediting_1274284(2835054, +), CAediting_1274285(2835068, +), CAediting_1274286(2835073, +), CAediting_1274287(2835078, +), CAediting_1274288(2835084, +), CAediting_1274289(2835098, +), CAediting_1274290(2835102, +), CAediting_1274291(2835103, +), CAediting_1274292(2835111, +), CAediting_1274293(2835116, +), CAediting_1274294(2835124, +), CAediting_1274295(2835128, +), CAediting_1274296(2835132, +), CAediting_1274297(2835138, +), CAediting_1274298(2835140, +), CAediting_1274299(2835154, +), CAediting_1274300(2835184, +), CAediting_1274301(2835194, +), CAediting_1274302(2835209, +), CAediting_1274303(2835218, +), CAediting_1274304(2835223, +), CAediting_1274305(2835224, +), CAediting_1274306(2835226, +), CAediting_1274307(2835231, +), CAediting_1274308(2835240, +), CAediting_1274309(2835289, +), CAediting_1274310(2835351, +), CAediting_1274311(2835357, +), CAediting_1274312(2835358, +), CAediting_1274313(2835361, +), CAediting_1274314(2835365, +), CAediting_1274315(2835378, +), CAediting_1274316(2835393, +), CAediting_1274317(2835417, +), CAediting_1274318(2835422, +), CAediting_1274319(2835429, +), CAediting_1274320(2835454, +), CAediting_1274321(2835509, +), CAediting_1274322(2835511, +), CAediting_1274323(2835517, +), CAediting_1274324(2835518, +), CAediting_1274325(2835520, +), CAediting_1274326(2835531, +), CAediting_1274327(2835544, +), CAediting_1274328(2835568, +), CAediting_1274329(2835569, +), CAediting_1274330(2835570, +), CAediting_1274331(2835582, +), CAediting_1274332(2835584, +), CAediting_1274333(2835585, +), CAediting_1274334(2835591, +),

Top

RNA editing positional annotations for ZNF554 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1274259	chr19_2826000_+	intronic
CAediting_1274260	chr19_2826923_+	intronic
CAediting_1274261	chr19_2826924_+	intronic
CAediting_1274262	chr19_2828487_+	intronic
CAediting_1274263	chr19_2828547_+	intronic
CAediting_1274264	chr19_2828556_+	intronic
CAediting_1274265	chr19_2828573_+	intronic
CAediting_1274266	chr19_2829117_+	intronic
CAediting_1274267	chr19_2829180_+	intronic
CAediting_1274268	chr19_2829181_+	intronic
CAediting_1274269	chr19_2829182_+	intronic
CAediting_1274270	chr19_2829239_+	intronic
CAediting_1274271	chr19_2829291_+	intronic
CAediting_1274272	chr19_2829451_+	intronic
CAediting_1274273	chr19_2829582_+	intronic
CAediting_1274274	chr19_2829597_+	intronic
CAediting_1274275	chr19_2829602_+	intronic
CAediting_1274276	chr19_2829616_+	intronic
CAediting_1274277	chr19_2829625_+	intronic
CAediting_1274278	chr19_2830142_+	intronic
CAediting_1274279	chr19_2830619_+	ncRNA_exonic
CAediting_1274280	chr19_2830738_+	ncRNA_exonic
CAediting_1274281	chr19_2830947_+	ncRNA_exonic
CAediting_1274282	chr19_2831346_+	ncRNA_exonic
CAediting_1274283	chr19_2835024_+	ncRNA_exonic
CAediting_1274284	chr19_2835054_+	ncRNA_exonic
CAediting_1274285	chr19_2835068_+	ncRNA_exonic
CAediting_1274286	chr19_2835073_+	ncRNA_exonic
CAediting_1274287	chr19_2835078_+	ncRNA_exonic
CAediting_1274288	chr19_2835084_+	ncRNA_exonic
CAediting_1274289	chr19_2835098_+	ncRNA_exonic
CAediting_1274290	chr19_2835102_+	ncRNA_exonic
CAediting_1274291	chr19_2835103_+	ncRNA_exonic
CAediting_1274292	chr19_2835111_+	ncRNA_exonic
CAediting_1274293	chr19_2835116_+	ncRNA_exonic
CAediting_1274294	chr19_2835124_+	ncRNA_exonic
CAediting_1274295	chr19_2835128_+	ncRNA_exonic
CAediting_1274296	chr19_2835132_+	ncRNA_exonic
CAediting_1274297	chr19_2835138_+	ncRNA_exonic
CAediting_1274298	chr19_2835140_+	ncRNA_exonic
CAediting_1274299	chr19_2835154_+	ncRNA_exonic
CAediting_1274300	chr19_2835184_+	ncRNA_exonic
CAediting_1274301	chr19_2835194_+	ncRNA_exonic
CAediting_1274302	chr19_2835209_+	ncRNA_exonic
CAediting_1274303	chr19_2835218_+	ncRNA_exonic
CAediting_1274304	chr19_2835223_+	ncRNA_exonic
CAediting_1274305	chr19_2835224_+	ncRNA_exonic
CAediting_1274306	chr19_2835226_+	ncRNA_exonic
CAediting_1274307	chr19_2835231_+	ncRNA_exonic
CAediting_1274308	chr19_2835240_+	ncRNA_exonic
CAediting_1274309	chr19_2835289_+	ncRNA_exonic
CAediting_1274310	chr19_2835351_+	ncRNA_exonic
CAediting_1274311	chr19_2835357_+	ncRNA_exonic
CAediting_1274312	chr19_2835358_+	ncRNA_exonic
CAediting_1274313	chr19_2835361_+	ncRNA_exonic
CAediting_1274314	chr19_2835365_+	ncRNA_exonic
CAediting_1274315	chr19_2835378_+	ncRNA_exonic
CAediting_1274316	chr19_2835393_+	ncRNA_exonic
CAediting_1274317	chr19_2835417_+	ncRNA_exonic
CAediting_1274318	chr19_2835422_+	ncRNA_exonic
CAediting_1274319	chr19_2835429_+	ncRNA_exonic
CAediting_1274320	chr19_2835454_+	ncRNA_exonic
CAediting_1274321	chr19_2835509_+	ncRNA_exonic
CAediting_1274322	chr19_2835511_+	ncRNA_exonic
CAediting_1274323	chr19_2835517_+	ncRNA_exonic
CAediting_1274324	chr19_2835518_+	ncRNA_exonic
CAediting_1274325	chr19_2835520_+	ncRNA_exonic
CAediting_1274326	chr19_2835531_+	ncRNA_exonic
CAediting_1274327	chr19_2835544_+	ncRNA_exonic
CAediting_1274328	chr19_2835568_+	ncRNA_exonic
CAediting_1274329	chr19_2835569_+	ncRNA_exonic
CAediting_1274330	chr19_2835570_+	ncRNA_exonic
CAediting_1274331	chr19_2835582_+	ncRNA_exonic
CAediting_1274332	chr19_2835584_+	ncRNA_exonic
CAediting_1274333	chr19_2835585_+	ncRNA_exonic
CAediting_1274334	chr19_2835591_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1274259	chr19_2826000_+	SINE	Alu	AluSp
CAediting_1274260	chr19_2826923_+	SINE	Alu	AluY
CAediting_1274261	chr19_2826924_+	SINE	Alu	AluY
CAediting_1274262	chr19_2828487_+	SINE	Alu	AluSx1
CAediting_1274263	chr19_2828547_+	SINE	Alu	AluSx1
CAediting_1274264	chr19_2828556_+	SINE	Alu	AluSx1
CAediting_1274265	chr19_2828573_+	SINE	Alu	AluSx1
CAediting_1274266	chr19_2829117_+	SINE	Alu	AluSz6
CAediting_1274267	chr19_2829180_+	SINE	Alu	AluSz6
CAediting_1274268	chr19_2829181_+	SINE	Alu	AluSz6
CAediting_1274269	chr19_2829182_+	SINE	Alu	AluSz6
CAediting_1274270	chr19_2829239_+	SINE	Alu	AluSz6
CAediting_1274271	chr19_2829291_+	SINE	Alu	AluSz6
CAediting_1274272	chr19_2829451_+	SINE	Alu	AluSp
CAediting_1274273	chr19_2829582_+	SINE	Alu	AluSp
CAediting_1274274	chr19_2829597_+	SINE	Alu	AluSp
CAediting_1274275	chr19_2829602_+	SINE	Alu	AluSp
CAediting_1274276	chr19_2829616_+	SINE	Alu	AluSp
CAediting_1274277	chr19_2829625_+	SINE	Alu	AluSp
CAediting_1274278	chr19_2830142_+	SINE	Alu	AluY
CAediting_1274279	chr19_2830619_+	SINE	Alu	AluSz6
CAediting_1274280	chr19_2830738_+	SINE	Alu	AluSz6
CAediting_1274281	chr19_2830947_+	SINE	Alu	AluSq
CAediting_1274282	chr19_2831346_+	SINE	Alu	AluY
CAediting_1274283	chr19_2835024_+	SINE	Alu	AluJr
CAediting_1274284	chr19_2835054_+	SINE	Alu	AluJr
CAediting_1274285	chr19_2835068_+	SINE	Alu	AluJr
CAediting_1274286	chr19_2835073_+	SINE	Alu	AluJr
CAediting_1274287	chr19_2835078_+	SINE	Alu	AluJr
CAediting_1274288	chr19_2835084_+	SINE	Alu	AluJr
CAediting_1274289	chr19_2835098_+	SINE	Alu	AluJr
CAediting_1274290	chr19_2835102_+	SINE	Alu	AluJr
CAediting_1274291	chr19_2835103_+	SINE	Alu	AluJr
CAediting_1274292	chr19_2835111_+	SINE	Alu	AluJr
CAediting_1274293	chr19_2835116_+	SINE	Alu	AluJr
CAediting_1274294	chr19_2835124_+	SINE	Alu	AluJr
CAediting_1274295	chr19_2835128_+	SINE	Alu	AluJr
CAediting_1274296	chr19_2835132_+	SINE	Alu	AluJr
CAediting_1274297	chr19_2835138_+	SINE	Alu	AluJr
CAediting_1274298	chr19_2835140_+	SINE	Alu	AluJr
CAediting_1274299	chr19_2835154_+	SINE	Alu	AluJr
CAediting_1274300	chr19_2835184_+	SINE	Alu	AluJr
CAediting_1274301	chr19_2835194_+	SINE	Alu	AluY
CAediting_1274302	chr19_2835209_+	SINE	Alu	AluY
CAediting_1274303	chr19_2835218_+	SINE	Alu	AluY
CAediting_1274304	chr19_2835223_+	SINE	Alu	AluY
CAediting_1274305	chr19_2835224_+	SINE	Alu	AluY
CAediting_1274306	chr19_2835226_+	SINE	Alu	AluY
CAediting_1274307	chr19_2835231_+	SINE	Alu	AluY
CAediting_1274308	chr19_2835240_+	SINE	Alu	AluY
CAediting_1274309	chr19_2835289_+	SINE	Alu	AluY
CAediting_1274310	chr19_2835351_+	SINE	Alu	AluY
CAediting_1274311	chr19_2835357_+	SINE	Alu	AluY
CAediting_1274312	chr19_2835358_+	SINE	Alu	AluY
CAediting_1274313	chr19_2835361_+	SINE	Alu	AluY
CAediting_1274314	chr19_2835365_+	SINE	Alu	AluY
CAediting_1274315	chr19_2835378_+	SINE	Alu	AluY
CAediting_1274316	chr19_2835393_+	SINE	Alu	AluY
CAediting_1274317	chr19_2835417_+	SINE	Alu	AluY
CAediting_1274318	chr19_2835422_+	SINE	Alu	AluY
CAediting_1274319	chr19_2835429_+	SINE	Alu	AluY
CAediting_1274320	chr19_2835454_+	SINE	Alu	AluY
CAediting_1274321	chr19_2835509_+	SINE	Alu	AluJr
CAediting_1274322	chr19_2835511_+	SINE	Alu	AluJr
CAediting_1274323	chr19_2835517_+	SINE	Alu	AluJr
CAediting_1274324	chr19_2835518_+	SINE	Alu	AluJr
CAediting_1274325	chr19_2835520_+	SINE	Alu	AluJr
CAediting_1274326	chr19_2835531_+	SINE	Alu	AluJr
CAediting_1274327	chr19_2835544_+	SINE	Alu	AluJr
CAediting_1274328	chr19_2835568_+	SINE	Alu	AluJr
CAediting_1274329	chr19_2835569_+	SINE	Alu	AluJr
CAediting_1274330	chr19_2835570_+	SINE	Alu	AluJr
CAediting_1274331	chr19_2835582_+	SINE	Alu	AluJr
CAediting_1274332	chr19_2835584_+	SINE	Alu	AluJr
CAediting_1274333	chr19_2835585_+	SINE	Alu	AluJr
CAediting_1274334	chr19_2835591_+	SINE	Alu	AluJr

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF554

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000172006.10.ZNF554.

Correlation between RNA A-to-I editing and PSI for ENSG00000172006.10.ZNF554.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF554

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

GBM.CAediting_1274296.ENSG00000172006.ZNF554.png
Soverview

LGG.CAediting_1274296.ENSG00000172006.ZNF554.png
Soverview

Top

Protein coding region RNA A-to-I editings for ZNF554

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for ZNF554

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1274286	chr19_2835073_+	ENSG00000172006.10	ENST00000590116	hsa-miR-381-5p	2835067	2835073	7mer-m8	2835052	2835074	141.00	-20.11
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3180	2835108	2835115	8mer-1a	2835096	2835115	141.00	-20.49
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3180	2835108	2835115	8mer-1a	2835096	2835115	141.00	-20.49
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3180-3p	2835108	2835115	8mer-1a	2835091	2835115	144.00	-27.71
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3180-3p	2835108	2835115	8mer-1a	2835091	2835115	144.00	-27.71
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3180-3p	2835108	2835115	8mer-1a	2835091	2835115	144.00	-27.71
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3196	2835108	2835115	8mer-1a	2835098	2835115	153.00	-23.40
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6816-5p	2835108	2835115	8mer-1a	2835096	2835115	149.00	-27.77
CAediting_1274294	chr19_2835124_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1247-3p	2835119	2835125	7mer-m8	2835104	2835126	144.00	-20.10
CAediting_1274296	chr19_2835132_+	ENSG00000172006.10	ENST00000590116	hsa-miR-5690	2835125	2835131	7mer-m8	2835112	2835132	141.00	-15.77
CAediting_1274296	chr19_2835132_+	ENSG00000172006.10	ENST00000590116	hsa-miR-624-5p	2835130	2835137	8mer-1a	2835115	2835137	163.00	-21.87
CAediting_1274297	chr19_2835138_+	ENSG00000172006.10	ENST00000590116	hsa-miR-101-3p	2835132	2835139	8mer-1a	2835120	2835139	161.00	-18.12
CAediting_1274297	chr19_2835138_+	ENSG00000172006.10	ENST00000590116	hsa-miR-101-3p	2835132	2835139	8mer-1a	2835120	2835139	161.00	-18.12
CAediting_1274297	chr19_2835138_+	ENSG00000172006.10	ENST00000590116	hsa-miR-139-5p	2835134	2835140	7mer-m8	2835118	2835141	153.00	-17.75
CAediting_1274303	chr19_2835218_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3117-3p	2835216	2835223	8mer-1a	2835201	2835223	147.00	-15.73
CAediting_1274303	chr19_2835218_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4759	2835215	2835222	8mer-1a	2835202	2835222	149.00	-14.74
CAediting_1274303	chr19_2835218_+	ENSG00000172006.10	ENST00000590116	hsa-miR-625-3p	2835212	2835218	7mer-m8	2835198	2835219	140.00	-14.38
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-302a-3p	2835222	2835228	7mer-m8	2835208	2835229	147.00	-11.40
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-302b-3p	2835222	2835228	7mer-m8	2835209	2835229	145.00	-10.16
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-302c-3p	2835222	2835228	7mer-m8	2835207	2835229	141.00	-12.09
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-302d-3p	2835222	2835228	7mer-m8	2835208	2835229	143.00	-10.23
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-302e	2835222	2835228	7mer-m8	2835213	2835229	141.00	-8.75
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-372-3p	2835222	2835228	7mer-m8	2835208	2835229	151.00	-15.56
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-373-3p	2835222	2835228	7mer-m8	2835207	2835229	167.00	-20.39
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520a-3p	2835222	2835228	7mer-m8	2835207	2835229	142.00	-11.87
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520b-3p	2835222	2835228	7mer-m8	2835208	2835229	144.00	-15.17
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520c-3p	2835222	2835228	7mer-m8	2835209	2835229	146.00	-15.17
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520d-3p	2835222	2835228	7mer-m8	2835208	2835229	140.00	-15.64
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520e-3p	2835222	2835228	7mer-m8	2835209	2835229	143.00	-14.43
CAediting_1274307	chr19_2835231_+	ENSG00000172006.10	ENST00000590116	hsa-miR-150-5p	2835228	2835234	7mer-m8	2835214	2835235	140.00	-15.81
CAediting_1274307	chr19_2835231_+	ENSG00000172006.10	ENST00000590116	hsa-miR-186-3p	2835226	2835233	8mer-1a	2835211	2835233	147.00	-16.73
CAediting_1274307	chr19_2835231_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520g-3p	2835224	2835230	7mer-m8	2835209	2835231	151.00	-9.43
CAediting_1274307	chr19_2835231_+	ENSG00000172006.10	ENST00000590116	hsa-miR-520h	2835224	2835230	7mer-m8	2835209	2835231	146.00	-9.43
CAediting_1274283	chr19_2835024_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4733-5p	2835020	2835026	7mer-m8	2835006	2835027	146.00	-13.87
CAediting_1274291	chr19_2835103_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4759	2835100	2835106	7mer-m8	2835087	2835107	144.00	-12.42
CAediting_1274295	chr19_2835128_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6765-3p	2835121	2835127	7mer-m8	2835108	2835128	149.00	-21.67
CAediting_1274301	chr19_2835194_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1281	2835187	2835193	7mer-m8	2835178	2835194	158.00	-23.49
CAediting_1274302	chr19_2835209_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3622a-5p	2835207	2835214	8mer-1a	2835191	2835214	147.00	-21.08
CAediting_1274308	chr19_2835240_+	ENSG00000172006.10	ENST00000590116	hsa-miR-10396a-3p	2835236	2835242	7mer-m8	2835222	2835243	151.00	-23.00
CAediting_1274308	chr19_2835240_+	ENSG00000172006.10	ENST00000590116	hsa-miR-10396b-3p	2835236	2835242	7mer-m8	2835221	2835243	151.00	-23.00
CAediting_1274308	chr19_2835240_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4707-5p	2835235	2835241	7mer-m8	2835218	2835242	142.00	-28.28
CAediting_1274310	chr19_2835351_+	ENSG00000172006.10	ENST00000590116	hsa-miR-140-3p	2835346	2835352	7mer-m8	2835333	2835353	155.00	-25.24
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-619-5p	2835352	2835357	6mer	2835337	2835358	159.00	-34.02
CAediting_1274316	chr19_2835393_+	ENSG00000172006.10	ENST00000590116	hsa-miR-342-3p	2835386	2835392	7mer-m8	2835371	2835393	140.00	-15.26
CAediting_1274316	chr19_2835393_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4284	2835388	2835394	7mer-m8	2835378	2835395	156.00	-24.29
CAediting_1274316	chr19_2835393_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4437	2835389	2835395	7mer-m8	2835376	2835396	141.00	-17.27
CAediting_1274317	chr19_2835417_+	ENSG00000172006.10	ENST00000590116	hsa-miR-324-3p	2835410	2835416	7mer-m8	2835398	2835417	145.00	-21.90
CAediting_1274317	chr19_2835417_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6075	2835414	2835421	8mer-1a	2835403	2835421	144.00	-21.03
CAediting_1274319	chr19_2835429_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4634	2835424	2835431	8mer-1a	2835411	2835431	150.00	-24.65
CAediting_1274320	chr19_2835454_+	ENSG00000172006.10	ENST00000590116	hsa-miR-340-3p	2835448	2835455	8mer-1a	2835434	2835455	140.00	-16.40
CAediting_1274320	chr19_2835454_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6827-3p	2835448	2835455	8mer-1a	2835435	2835455	147.00	-17.53
CAediting_1274299	chr19_2835154_+	ENSG00000172006.10	ENST00000590116	hsa-miR-10394-3p	2835152	2835159	8mer-1a	2835137	2835159	144.00	-23.07
CAediting_1274299	chr19_2835154_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3178	2835152	2835159	8mer-1a	2835143	2835159	145.00	-23.60

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1274314	chr19_2835365_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1200	2835361	2835367	7mer-m8	2835347	2835368	145	-16.66
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274313	chr19_2835361_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274313	chr19_2835361_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274313	chr19_2835361_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274313	chr19_2835361_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1244	2835356	2835362	7mer-m8	2835337	2835363	155	-16.35
CAediting_1274286	chr19_2835073_+	ENSG00000172006.10	ENST00000590116	hsa-miR-1294	2835067	2835073	7mer-m8	2835051	2835074	144	-17.67
CAediting_1274287	chr19_2835078_+	ENSG00000172006.10	ENST00000590116	hsa-miR-17-3p	2835072	2835078	7mer-m8	2835059	2835079	153	-19.57
CAediting_1274285	chr19_2835068_+	ENSG00000172006.10	ENST00000590116	hsa-miR-202-3p	2835065	2835072	8mer-1a	2835054	2835072	150	-16.5
CAediting_1274290	chr19_2835102_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3159	2835100	2835106	7mer-m8	2835086	2835107	152	-15.39
CAediting_1274291	chr19_2835103_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3159	2835100	2835106	7mer-m8	2835086	2835107	152	-15.39
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3654	2835049	2835055	7mer-m8	2835036	2835056	144	-19.7
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378a-3p	2835048	2835054	7mer-m8	2835035	2835055	147	-19.41
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378b	2835048	2835054	7mer-m8	2835038	2835055	143	-16.8
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378c	2835048	2835054	7mer-m8	2835032	2835055	147	-23.95
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378d	2835048	2835054	7mer-m8	2835037	2835055	147	-18.15
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378d	2835048	2835054	7mer-m8	2835037	2835055	147	-18.15
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378e	2835048	2835054	7mer-m8	2835038	2835055	147	-20.21
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378f	2835048	2835054	7mer-m8	2835037	2835055	151	-20.44
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378h	2835048	2835054	7mer-m8	2835028	2835055	146	-25.08
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-378i	2835048	2835054	7mer-m8	2835036	2835055	143	-19.5
CAediting_1274311	chr19_2835357_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3913-5p	2835351	2835357	7mer-m8	2835337	2835358	146	-18.5
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3913-5p	2835351	2835357	7mer-m8	2835337	2835358	146	-18.5
CAediting_1274311	chr19_2835357_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3913-5p	2835351	2835357	7mer-m8	2835337	2835358	146	-18.5
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-3913-5p	2835351	2835357	7mer-m8	2835337	2835358	146	-18.5
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-422a	2835048	2835054	7mer-m8	2835034	2835055	144	-20.28
CAediting_1274284	chr19_2835054_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4252	2835052	2835058	7mer-m8	2835039	2835059	149	-20.65
CAediting_1274317	chr19_2835417_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4284	2835413	2835419	7mer-m8	2835403	2835420	144	-13.03
CAediting_1274311	chr19_2835357_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4425	2835352	2835358	7mer-m8	2835340	2835359	154	-24.66
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4425	2835352	2835358	7mer-m8	2835340	2835359	154	-24.66
CAediting_1274318	chr19_2835422_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4638-5p	2835416	2835423	8mer-1a	2835404	2835423	146	-21.99
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4651	2835108	2835115	8mer-1a	2835097	2835115	149	-21.6
CAediting_1274311	chr19_2835357_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4703-3p	2835355	2835361	7mer-m8	2835339	2835362	150	-17.55
CAediting_1274312	chr19_2835358_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4703-3p	2835355	2835361	7mer-m8	2835339	2835362	150	-17.55
CAediting_1274313	chr19_2835361_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4703-3p	2835355	2835361	7mer-m8	2835339	2835362	150	-17.55
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4731-5p	2835111	2835117	7mer-m8	2835097	2835118	140	-17.78
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-485-5p	2835114	2835120	7mer-m8	2835099	2835121	151	-18.46
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-608	2835108	2835115	8mer-1a	2835094	2835115	144	-19.74
CAediting_1274304	chr19_2835223_+	ENSG00000172006.10	ENST00000590116	hsa-miR-651-5p	2835217	2835223	7mer-m8	2835200	2835224	147	-9.73
CAediting_1274305	chr19_2835224_+	ENSG00000172006.10	ENST00000590116	hsa-miR-651-5p	2835217	2835223	7mer-m8	2835200	2835224	147	-9.73
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6737-5p	2835109	2835115	7mer-m8	2835096	2835116	149	-21.65
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6737-5p	2835109	2835115	7mer-m8	2835096	2835116	149	-21.65
CAediting_1274315	chr19_2835378_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6747-3p	2835373	2835380	8mer-1a	2835358	2835380	149	-23.42
CAediting_1274319	chr19_2835429_+	ENSG00000172006.10	ENST00000590116	hsa-miR-675-5p	2835425	2835431	7mer-1a	2835409	2835431	141	-23.91
CAediting_1274300	chr19_2835184_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6777-3p	2835181	2835187	7mer-m8	2835169	2835188	140	-16.75
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6778-5p	2835105	2835111	7mer-m8	2835091	2835112	150	-23.18
CAediting_1274302	chr19_2835209_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6807-5p	2835202	2835208	7mer-m8	2835188	2835209	145	-18.48
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6812-5p	2835109	2835115	7mer-m8	2835090	2835116	153	-26.39
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6812-5p	2835109	2835115	7mer-m8	2835090	2835116	153	-26.39
CAediting_1274292	chr19_2835111_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6819-5p	2835109	2835115	7mer-m8	2835095	2835116	153	-25.07
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6819-5p	2835109	2835115	7mer-m8	2835095	2835116	153	-25.07
CAediting_1274301	chr19_2835194_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6836-3p	2835187	2835193	7mer-m8	2835174	2835194	147	-17.9
CAediting_1274294	chr19_2835124_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6852-5p	2835120	2835125	6mer	2835106	2835126	140	-21.44
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6884-5p	2835114	2835120	7mer-m8	2835101	2835121	149	-17.84
CAediting_1274320	chr19_2835454_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6888-3p	2835449	2835455	7mer-m8	2835436	2835456	145	-16.11
CAediting_1274310	chr19_2835351_+	ENSG00000172006.10	ENST00000590116	hsa-miR-7151-3p	2835344	2835350	7mer-m8	2835331	2835351	140	-17.98
CAediting_1274293	chr19_2835116_+	ENSG00000172006.10	ENST00000590116	hsa-miR-7155-5p	2835110	2835116	7mer-m8	2835099	2835117	142	-18.29
CAediting_1274283	chr19_2835024_+	ENSG00000172006.10	ENST00000590116	hsa-miR-7159-5p	2835017	2835023	7mer-m8	2835003	2835024	150	-15.21
CAediting_1274309	chr19_2835289_+	ENSG00000172006.10	ENST00000590116	hsa-miR-892a	2835284	2835290	7mer-m8	2835271	2835291	140	-15.2

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000172006.10	ENST00000590116	hsa-miR-4477b	2832474	2832480	7mer-m8	2832461	2832481	145	-8.96
CAediting_846604	chr11_93733708_-	ENSG00000172006.10	ENST00000590116	hsa-miR-1304-3p	2833972	2833978	7mer-m8	2833958	2833979	144	-18.22
CAediting_980496	chr14_31014685_-	ENSG00000172006.10	ENST00000590116	hsa-miR-624-3p	2835294	2835300	7mer-m8	2835279	2835301	153	-14.62
CAediting_846604	chr11_93733708_-	ENSG00000172006.10	ENST00000591265	hsa-miR-1304-3p	2833972	2833978	7mer-m8	2833958	2833979	144	-18.22
CAediting_396018	chr5_1062918_-	ENSG00000172006.10	ENST00000590116	hsa-miR-4635	2832475	2832481	7mer-m8	2832464	2832482	141	-13.31
CAediting_1229415	chr17_67471547_+	ENSG00000172006.10	ENST00000590116	hsa-miR-548aa	2833725	2833731	7mer-m8	2833710	2833732	153	-13.88
CAediting_86358	chr1_109598906_+	ENSG00000172006.10	ENST00000590116	hsa-miR-197-5p	2834327	2834333	7mer-m8	2834312	2834334	149	-28.38
CAediting_1229415	chr17_67471547_+	ENSG00000172006.10	ENST00000591265	hsa-miR-548aa	2833725	2833731	7mer-m8	2833710	2833732	153	-13.88

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_604450	chr7_133034877_-	ENSG00000172006.10	ENST00000590116	hsa-miR-3654	2835049	2835055	7mer-m8	2835036	2835056	144	-19.7
CAediting_980496	chr14_31014685_-	ENSG00000172006.10	ENST00000590116	hsa-miR-624-3p	2834047	2834053	7mer-m8	2834034	2834054	147	-18
CAediting_580943	chr7_100356700_+	ENSG00000172006.10	ENST00000590116	hsa-miR-6840-3p	2835087	2835093	7mer-m8	2835069	2835094	151	-27.25

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZNF554

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for ZNF554

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_1274296	chr19_2835132_+	0.000951962703195726	0.340676295909437	.	.	.	.
LGG	CAediting_1274296	chr19_2835132_+	.	.	0.0293800579295161	0.114195546570629	.	.
BRCA	CAediting_1274296	chr19_2835132_+	0.000663165230112774	0.148392860625157	.	.	.	.
LUSC	CAediting_1274296	chr19_2835132_+	0.0475154579571333	0.206066177836129	.	.	.	.
GBM	CAediting_1274296	chr19_2835132_+	0.000616599413803309	0.303298049873174	.	.	.	.
PRAD	CAediting_1274296	chr19_2835132_+	0.0285540662670122	0.164621442552589	.	.	.	.
THCA	CAediting_1274296	chr19_2835132_+	0.00078256295933127	0.188899367687432	.	.	.	.
PCPG	CAediting_1274296	chr19_2835132_+	0.0127856630944536	0.325056633852828	.	.	.	.
SKCM	CAediting_1274296	chr19_2835132_+	0.0123984145075868	0.293318539979798	.	.	.	.
TGCT	CAediting_1274296	chr19_2835132_+	0.038974585964001	0.221776203893076	.	.	.	.
THYM	CAediting_1274296	chr19_2835132_+	.	.	.	.	0.0443076878925304	0.220036172107841
BRCA	CAediting_1274303	chr19_2835218_+	6.9963728232479e-06	0.334204239321618	.	.	0.0419242578876985	0.154851199028462
THCA	CAediting_1274303	chr19_2835218_+	0.00245349854591848	0.358971719401389	.	.	.	.
BRCA	CAediting_1274307	chr19_2835231_+	0.0316535494241229	0.163451730198685	.	.	.	.
GBM	CAediting_1274307	chr19_2835231_+	0.0429901809014268	0.269055115363577	.	.	.	.
THCA	CAediting_1274307	chr19_2835231_+	0.0155607444045009	0.313653493913014	.	.	.	.
LGG	CAediting_1274324	chr19_2835518_+	0.0274998441851069	0.23638975322076	.	.	.	.
BRCA	CAediting_1274324	chr19_2835518_+	0.0196667455581907	0.205184920467858	.	.	.	.
PCPG	CAediting_1274324	chr19_2835518_+	0.00401393166606452	0.392379070509727	0.00647029962696244	0.372941419397948	.	.
BRCA	CAediting_1274329	chr19_2835569_+	0.00109348693898802	0.310031437279676	.	.	.	.

Top

Relation with cancer stages for ZNF554

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
THCA	pathologic_stage	CAediting_1274303	chr19_2835218_+	0.0417914157576716	0.245773736334316

Top

Relation with survival for ZNF554

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for ZNF554

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for ZNF554

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene