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Editing gene: EFHC1 (CAeditome ID:114327)

Gene summary for EFHC1

Gene summary

Gene information	Gene symbol	EFHC1
	Gene ID	114327
	Gene name	EF-hand domain containing 1
	Synonyms	EJM1\|POC9\|RIB72\|dJ304B14.2
	Cytomap	6p12.2
	Type of gene	protein-coding
	Description	EF-hand domain-containing protein 1EF-hand domain (C-terminal) containing 1myoclonin-1
	Modification date	20210531
	UniProtAcc	Q5JVL4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
EFHC1	GO:0043014	EF-hand domain-containing protein 1	19734894
EFHC1	GO:0000922	EF-hand domain-containing protein 1	28370826
EFHC1	GO:0005813	EF-hand domain-containing protein 1	22926142
EFHC1	GO:0072686	EF-hand domain-containing protein 1	19734894
EFHC1	GO:0072686	EF-hand domain-containing protein 1	22926142

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RNA A-to-I events for EFHC1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000096093.13

RNA A-to-I editing events in Cancer.

CAediting_486541(52455393, +), CAediting_486542(52455400, +), CAediting_486543(52455604, +), CAediting_486544(52456658, +), CAediting_486545(52458705, +), CAediting_486546(52458733, +), CAediting_486547(52458768, +), CAediting_486548(52458829, +), CAediting_486549(52458830, +), CAediting_486550(52458832, +), CAediting_486551(52458836, +), CAediting_486552(52458837, +), CAediting_486553(52458854, +), CAediting_486554(52458904, +), CAediting_486555(52458932, +), CAediting_486556(52458946, +), CAediting_486557(52458983, +), CAediting_486558(52458988, +), CAediting_486559(52459036, +), CAediting_486560(52459072, +), CAediting_486561(52461343, +), CAediting_486562(52461357, +), CAediting_486563(52461412, +), CAediting_486564(52461457, +), CAediting_486565(52461483, +), CAediting_486566(52461508, +), CAediting_486567(52462820, +), CAediting_486568(52463145, +), CAediting_486569(52463157, +), CAediting_486570(52463302, +), CAediting_486571(52467282, +), CAediting_486572(52481595, +), CAediting_486573(52481605, +), CAediting_486574(52481637, +), CAediting_486575(52481645, +), CAediting_486576(52481646, +), CAediting_486577(52481649, +), CAediting_486578(52481656, +), CAediting_486579(52481659, +), CAediting_486580(52481661, +), CAediting_486581(52481667, +), CAediting_486582(52481692, +), CAediting_486583(52481693, +), CAediting_486584(52481773, +), CAediting_486585(52481779, +), CAediting_486586(52482087, +), CAediting_486587(52482088, +), CAediting_486588(52482093, +), CAediting_486589(52482179, +), CAediting_486590(52482188, +), CAediting_486591(52482193, +), CAediting_486592(52482200, +), CAediting_486593(52482220, +), CAediting_486594(52482223, +), CAediting_486595(52482236, +), CAediting_486596(52482330, +), CAediting_486597(52492634, +), CAediting_486598(52492636, +), CAediting_486599(52492646, +), CAediting_486600(52492656, +), CAediting_486601(52492693, +), CAediting_486602(52492694, +), CAediting_486603(52492700, +), CAediting_486604(52492714, +), CAediting_486605(52492715, +), CAediting_486606(52492732, +), CAediting_486607(52492744, +), CAediting_486608(52492753, +), CAediting_486609(52492754, +), CAediting_486610(52492756, +), CAediting_486611(52492762, +), CAediting_486612(52492763, +), CAediting_486613(52492767, +), CAediting_486614(52492776, +), CAediting_486615(52492781, +), CAediting_486616(52492869, +), CAediting_486617(52492879, +), CAediting_486618(52493487, +), CAediting_486619(52493490, +), CAediting_486620(52493494, +), CAediting_486621(52493496, +), CAediting_486622(52493501, +), CAediting_486623(52493502, +), CAediting_486624(52493505, +), CAediting_486625(52493509, +), CAediting_486626(52493531, +), CAediting_486627(52493537, +), CAediting_486628(52493541, +), CAediting_486629(52493548, +), CAediting_486630(52493554, +), CAediting_486631(52493555, +), CAediting_486632(52493556, +), CAediting_486633(52493561, +), CAediting_486634(52493563, +), CAediting_486635(52493564, +), CAediting_486636(52493567, +), CAediting_486637(52493572, +), CAediting_486638(52493573, +), CAediting_486639(52493584, +), CAediting_486640(52493586, +), CAediting_486641(52493593, +), CAediting_486642(52493597, +), CAediting_486643(52493601, +), CAediting_486644(52493602, +), CAediting_486645(52493638, +), CAediting_486646(52493643, +), CAediting_486647(52493644, +), CAediting_486648(52493651, +), CAediting_486649(52495609, +), CAediting_486650(52495613, +), CAediting_486651(52495621, +), CAediting_486652(52495639, +), CAediting_486653(52495640, +), CAediting_486654(52495653, +), CAediting_486655(52495658, +), CAediting_486656(52495663, +), CAediting_486657(52495668, +), CAediting_486658(52495674, +), CAediting_486659(52495675, +), CAediting_486660(52495718, +), CAediting_486661(52495722, +), CAediting_486662(52495738, +),

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RNA editing positional annotations for EFHC1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_486541	chr6_52455393_+	intronic
CAediting_486542	chr6_52455400_+	intronic
CAediting_486543	chr6_52455604_+	intronic
CAediting_486544	chr6_52456658_+	intronic
CAediting_486545	chr6_52458705_+	intronic
CAediting_486546	chr6_52458733_+	intronic
CAediting_486547	chr6_52458768_+	intronic
CAediting_486548	chr6_52458829_+	intronic
CAediting_486549	chr6_52458830_+	intronic
CAediting_486550	chr6_52458832_+	intronic
CAediting_486551	chr6_52458836_+	intronic
CAediting_486552	chr6_52458837_+	intronic
CAediting_486553	chr6_52458854_+	intronic
CAediting_486554	chr6_52458904_+	intronic
CAediting_486555	chr6_52458932_+	intronic
CAediting_486556	chr6_52458946_+	intronic
CAediting_486557	chr6_52458983_+	intronic
CAediting_486558	chr6_52458988_+	intronic
CAediting_486559	chr6_52459036_+	intronic
CAediting_486560	chr6_52459072_+	intronic
CAediting_486561	chr6_52461343_+	intronic
CAediting_486562	chr6_52461357_+	intronic
CAediting_486563	chr6_52461412_+	intronic
CAediting_486564	chr6_52461457_+	intronic
CAediting_486565	chr6_52461483_+	intronic
CAediting_486566	chr6_52461508_+	intronic
CAediting_486567	chr6_52462820_+	intronic
CAediting_486568	chr6_52463145_+	intronic
CAediting_486569	chr6_52463157_+	intronic
CAediting_486570	chr6_52463302_+	intronic
CAediting_486571	chr6_52467282_+	intronic
CAediting_486572	chr6_52481595_+	intronic
CAediting_486573	chr6_52481605_+	intronic
CAediting_486574	chr6_52481637_+	intronic
CAediting_486575	chr6_52481645_+	intronic
CAediting_486576	chr6_52481646_+	intronic
CAediting_486577	chr6_52481649_+	intronic
CAediting_486578	chr6_52481656_+	intronic
CAediting_486579	chr6_52481659_+	intronic
CAediting_486580	chr6_52481661_+	intronic
CAediting_486581	chr6_52481667_+	intronic
CAediting_486582	chr6_52481692_+	intronic
CAediting_486583	chr6_52481693_+	intronic
CAediting_486584	chr6_52481773_+	intronic
CAediting_486585	chr6_52481779_+	intronic
CAediting_486586	chr6_52482087_+	intronic
CAediting_486587	chr6_52482088_+	intronic
CAediting_486588	chr6_52482093_+	intronic
CAediting_486589	chr6_52482179_+	intronic
CAediting_486590	chr6_52482188_+	intronic
CAediting_486591	chr6_52482193_+	intronic
CAediting_486592	chr6_52482200_+	intronic
CAediting_486593	chr6_52482220_+	intronic
CAediting_486594	chr6_52482223_+	intronic
CAediting_486595	chr6_52482236_+	intronic
CAediting_486596	chr6_52482330_+	intronic
CAediting_486597	chr6_52492634_+	UTR3
CAediting_486598	chr6_52492636_+	UTR3
CAediting_486599	chr6_52492646_+	UTR3
CAediting_486600	chr6_52492656_+	UTR3
CAediting_486601	chr6_52492693_+	UTR3
CAediting_486602	chr6_52492694_+	UTR3
CAediting_486603	chr6_52492700_+	UTR3
CAediting_486604	chr6_52492714_+	UTR3
CAediting_486605	chr6_52492715_+	UTR3
CAediting_486606	chr6_52492732_+	UTR3
CAediting_486607	chr6_52492744_+	UTR3
CAediting_486608	chr6_52492753_+	UTR3
CAediting_486609	chr6_52492754_+	UTR3
CAediting_486610	chr6_52492756_+	UTR3
CAediting_486611	chr6_52492762_+	UTR3
CAediting_486612	chr6_52492763_+	UTR3
CAediting_486613	chr6_52492767_+	UTR3
CAediting_486614	chr6_52492776_+	UTR3
CAediting_486615	chr6_52492781_+	UTR3
CAediting_486616	chr6_52492869_+	UTR3
CAediting_486617	chr6_52492879_+	UTR3
CAediting_486618	chr6_52493487_+	UTR3
CAediting_486619	chr6_52493490_+	UTR3
CAediting_486620	chr6_52493494_+	UTR3
CAediting_486621	chr6_52493496_+	UTR3
CAediting_486622	chr6_52493501_+	UTR3
CAediting_486623	chr6_52493502_+	UTR3
CAediting_486624	chr6_52493505_+	UTR3
CAediting_486625	chr6_52493509_+	UTR3
CAediting_486626	chr6_52493531_+	UTR3
CAediting_486627	chr6_52493537_+	UTR3
CAediting_486628	chr6_52493541_+	UTR3
CAediting_486629	chr6_52493548_+	UTR3
CAediting_486630	chr6_52493554_+	UTR3
CAediting_486631	chr6_52493555_+	UTR3
CAediting_486632	chr6_52493556_+	UTR3
CAediting_486633	chr6_52493561_+	UTR3
CAediting_486634	chr6_52493563_+	UTR3
CAediting_486635	chr6_52493564_+	UTR3
CAediting_486636	chr6_52493567_+	UTR3
CAediting_486637	chr6_52493572_+	UTR3
CAediting_486638	chr6_52493573_+	UTR3
CAediting_486639	chr6_52493584_+	UTR3
CAediting_486640	chr6_52493586_+	UTR3
CAediting_486641	chr6_52493593_+	UTR3
CAediting_486642	chr6_52493597_+	UTR3
CAediting_486643	chr6_52493601_+	UTR3
CAediting_486644	chr6_52493602_+	UTR3
CAediting_486645	chr6_52493638_+	UTR3
CAediting_486646	chr6_52493643_+	UTR3
CAediting_486647	chr6_52493644_+	UTR3
CAediting_486648	chr6_52493651_+	UTR3
CAediting_486649	chr6_52495609_+	UTR3
CAediting_486650	chr6_52495613_+	UTR3
CAediting_486651	chr6_52495621_+	UTR3
CAediting_486652	chr6_52495639_+	UTR3
CAediting_486653	chr6_52495640_+	UTR3
CAediting_486654	chr6_52495653_+	UTR3
CAediting_486655	chr6_52495658_+	UTR3
CAediting_486656	chr6_52495663_+	UTR3
CAediting_486657	chr6_52495668_+	UTR3
CAediting_486658	chr6_52495674_+	UTR3
CAediting_486659	chr6_52495675_+	UTR3
CAediting_486660	chr6_52495718_+	UTR3
CAediting_486661	chr6_52495722_+	UTR3
CAediting_486662	chr6_52495738_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_486541	chr6_52455393_+	SINE	Alu	AluSc8
CAediting_486542	chr6_52455400_+	SINE	Alu	AluSc8
CAediting_486543	chr6_52455604_+	SINE	Alu	AluSc8
CAediting_486544	chr6_52456658_+	SINE	Alu	AluSx1
CAediting_486545	chr6_52458705_+	LINE	L1	L1PA16
CAediting_486546	chr6_52458733_+	LINE	L1	L1PA16
CAediting_486547	chr6_52458768_+	LINE	L1	L1PA16
CAediting_486548	chr6_52458829_+	LINE	L1	L1PA16
CAediting_486549	chr6_52458830_+	LINE	L1	L1PA16
CAediting_486550	chr6_52458832_+	LINE	L1	L1PA16
CAediting_486551	chr6_52458836_+	LINE	L1	L1PA16
CAediting_486552	chr6_52458837_+	LINE	L1	L1PA16
CAediting_486553	chr6_52458854_+	LINE	L1	L1PA16
CAediting_486554	chr6_52458904_+	LINE	L1	L1PA16
CAediting_486555	chr6_52458932_+	LINE	L1	L1PA16
CAediting_486556	chr6_52458946_+	LINE	L1	L1PA16
CAediting_486557	chr6_52458983_+	LINE	L1	L1PA16
CAediting_486558	chr6_52458988_+	LINE	L1	L1PA16
CAediting_486559	chr6_52459036_+	LINE	L1	L1PA16
CAediting_486560	chr6_52459072_+	LINE	L1	L1PA16
CAediting_486561	chr6_52461343_+	LINE	L1	L1PA13
CAediting_486562	chr6_52461357_+	LINE	L1	L1PA13
CAediting_486563	chr6_52461412_+	LINE	L1	L1PA13
CAediting_486564	chr6_52461457_+	LINE	L1	L1PA13
CAediting_486565	chr6_52461483_+	LINE	L1	L1PA13
CAediting_486566	chr6_52461508_+	LINE	L1	L1PA13
CAediting_486567	chr6_52462820_+	SINE	Alu	AluSz
CAediting_486568	chr6_52463145_+	SINE	Alu	AluY
CAediting_486569	chr6_52463157_+	SINE	Alu	AluY
CAediting_486570	chr6_52463302_+	SINE	Alu	AluY
CAediting_486571	chr6_52467282_+	SINE	Alu	AluSx
CAediting_486572	chr6_52481595_+	SINE	Alu	AluJo
CAediting_486573	chr6_52481605_+	SINE	Alu	AluJo
CAediting_486574	chr6_52481637_+	SINE	Alu	AluJo
CAediting_486575	chr6_52481645_+	SINE	Alu	AluJo
CAediting_486576	chr6_52481646_+	SINE	Alu	AluJo
CAediting_486577	chr6_52481649_+	SINE	Alu	AluJo
CAediting_486578	chr6_52481656_+	SINE	Alu	AluJo
CAediting_486579	chr6_52481659_+	SINE	Alu	AluJo
CAediting_486580	chr6_52481661_+	SINE	Alu	AluJo
CAediting_486581	chr6_52481667_+	SINE	Alu	AluJo
CAediting_486582	chr6_52481692_+	SINE	Alu	AluJo
CAediting_486583	chr6_52481693_+	SINE	Alu	AluJo
CAediting_486584	chr6_52481773_+	SINE	Alu	AluJo
CAediting_486585	chr6_52481779_+	SINE	Alu	AluJo
CAediting_486586	chr6_52482087_+	SINE	Alu	AluSx3
CAediting_486587	chr6_52482088_+	SINE	Alu	AluSx3
CAediting_486588	chr6_52482093_+	SINE	Alu	AluSx3
CAediting_486589	chr6_52482179_+	SINE	Alu	AluSx3
CAediting_486590	chr6_52482188_+	SINE	Alu	AluSx3
CAediting_486591	chr6_52482193_+	SINE	Alu	AluSx3
CAediting_486592	chr6_52482200_+	SINE	Alu	AluSx3
CAediting_486593	chr6_52482220_+	SINE	Alu	AluSx3
CAediting_486594	chr6_52482223_+	SINE	Alu	AluSx3
CAediting_486595	chr6_52482236_+	SINE	Alu	AluSx3
CAediting_486596	chr6_52482330_+	SINE	Alu	AluSx3
CAediting_486597	chr6_52492634_+	SINE	Alu	AluJr
CAediting_486598	chr6_52492636_+	SINE	Alu	AluJr
CAediting_486599	chr6_52492646_+	SINE	Alu	AluJr
CAediting_486600	chr6_52492656_+	SINE	Alu	AluJr
CAediting_486601	chr6_52492693_+	SINE	Alu	AluJr
CAediting_486602	chr6_52492694_+	SINE	Alu	AluJr
CAediting_486603	chr6_52492700_+	SINE	Alu	AluJr
CAediting_486604	chr6_52492714_+	SINE	Alu	AluJr
CAediting_486605	chr6_52492715_+	SINE	Alu	AluJr
CAediting_486606	chr6_52492732_+	SINE	Alu	AluJr
CAediting_486607	chr6_52492744_+	SINE	Alu	AluJr
CAediting_486608	chr6_52492753_+	SINE	Alu	AluJr
CAediting_486609	chr6_52492754_+	SINE	Alu	AluJr
CAediting_486610	chr6_52492756_+	SINE	Alu	AluJr
CAediting_486611	chr6_52492762_+	SINE	Alu	AluJr
CAediting_486612	chr6_52492763_+	SINE	Alu	AluJr
CAediting_486613	chr6_52492767_+	SINE	Alu	AluJr
CAediting_486614	chr6_52492776_+	SINE	Alu	AluJr
CAediting_486615	chr6_52492781_+	SINE	Alu	AluJr
CAediting_486616	chr6_52492869_+	SINE	Alu	AluJr
CAediting_486617	chr6_52492879_+	SINE	Alu	AluJr
CAediting_486618	chr6_52493487_+	SINE	Alu	AluSx
CAediting_486619	chr6_52493490_+	SINE	Alu	AluSx
CAediting_486620	chr6_52493494_+	SINE	Alu	AluSx
CAediting_486621	chr6_52493496_+	SINE	Alu	AluSx
CAediting_486622	chr6_52493501_+	SINE	Alu	AluSx
CAediting_486623	chr6_52493502_+	SINE	Alu	AluSx
CAediting_486624	chr6_52493505_+	SINE	Alu	AluSx
CAediting_486625	chr6_52493509_+	SINE	Alu	AluSx
CAediting_486626	chr6_52493531_+	SINE	Alu	AluSx
CAediting_486627	chr6_52493537_+	SINE	Alu	AluSx
CAediting_486628	chr6_52493541_+	SINE	Alu	AluSx
CAediting_486629	chr6_52493548_+	SINE	Alu	AluSx
CAediting_486630	chr6_52493554_+	SINE	Alu	AluSx
CAediting_486631	chr6_52493555_+	SINE	Alu	AluSx
CAediting_486632	chr6_52493556_+	SINE	Alu	AluSx
CAediting_486633	chr6_52493561_+	SINE	Alu	AluSx
CAediting_486634	chr6_52493563_+	SINE	Alu	AluSx
CAediting_486635	chr6_52493564_+	SINE	Alu	AluSx
CAediting_486636	chr6_52493567_+	SINE	Alu	AluSx
CAediting_486637	chr6_52493572_+	SINE	Alu	AluSx
CAediting_486638	chr6_52493573_+	SINE	Alu	AluSx
CAediting_486639	chr6_52493584_+	SINE	Alu	AluSx
CAediting_486640	chr6_52493586_+	SINE	Alu	AluSx
CAediting_486641	chr6_52493593_+	SINE	Alu	AluSx
CAediting_486642	chr6_52493597_+	SINE	Alu	AluSx
CAediting_486643	chr6_52493601_+	SINE	Alu	AluSx
CAediting_486644	chr6_52493602_+	SINE	Alu	AluSx
CAediting_486645	chr6_52493638_+	SINE	Alu	AluSx
CAediting_486646	chr6_52493643_+	SINE	Alu	AluSx
CAediting_486647	chr6_52493644_+	SINE	Alu	AluSx
CAediting_486648	chr6_52493651_+	SINE	Alu	AluSx
CAediting_486649	chr6_52495609_+	SINE	Alu	AluJo
CAediting_486650	chr6_52495613_+	SINE	Alu	AluJo
CAediting_486651	chr6_52495621_+	SINE	Alu	AluJo
CAediting_486652	chr6_52495639_+	SINE	Alu	AluJo
CAediting_486653	chr6_52495640_+	SINE	Alu	AluJo
CAediting_486654	chr6_52495653_+	SINE	Alu	AluJo
CAediting_486655	chr6_52495658_+	SINE	Alu	AluJo
CAediting_486656	chr6_52495663_+	SINE	Alu	AluJo
CAediting_486657	chr6_52495668_+	SINE	Alu	AluJo
CAediting_486658	chr6_52495674_+	SINE	Alu	AluJo
CAediting_486659	chr6_52495675_+	SINE	Alu	AluJo
CAediting_486660	chr6_52495718_+	SINE	Alu	AluJo
CAediting_486661	chr6_52495722_+	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for EFHC1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_486580	chr6_52481661_+	52481660:52481668	5SS	2+0i	CAGGTGTAC	2.59	CGGGTGTAC	-2.23
ES	CAediting_486581	chr6_52481667_+	52481660:52481668	5SS	0+5i	CAGGTGTAC	2.59	CAGGTGTGC	6.46

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000096093.13.EFHC1.

Correlation between RNA A-to-I editing and PSI for ENSG00000096093.13.EFHC1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for EFHC1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

GBM.CAediting_486607.ENSG00000096093.EFHC1.png
Soverview

GBM.CAediting_486653.ENSG00000096093.EFHC1.png
Soverview

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Protein coding region RNA A-to-I editings for EFHC1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for EFHC1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_486607	chr6_52492744_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4252	52492739	52492745	7mer-m8	52492728	52492746	142.00	-14.15
CAediting_486607	chr6_52492744_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4691-3p	52492741	52492747	7mer-m8	52492722	52492748	148.00	-25.33
CAediting_486644	chr6_52493602_+	ENSG00000096093.13	ENST00000538167	hsa-miR-149-5p	52493595	52493601	7mer-m8	52493580	52493602	152.00	-22.11
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-340-3p	52495607	52495613	7mer-m8	52495593	52495614	140.00	-16.15
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6827-3p	52495607	52495613	7mer-m8	52495594	52495614	145.00	-16.55
CAediting_486651	chr6_52495621_+	ENSG00000096093.13	ENST00000538167	hsa-miR-451b	52495616	52495622	7mer-m8	52495602	52495623	140.00	-11.14
CAediting_486651	chr6_52495621_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4696	52495615	52495621	7mer-m8	52495605	52495622	141.00	-19.61
CAediting_486651	chr6_52495621_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6501-3p	52495619	52495625	7mer-m8	52495600	52495626	151.00	-18.18
CAediting_486653	chr6_52495640_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3925-3p	52495633	52495639	7mer-m8	52495620	52495640	146.00	-15.41
CAediting_486653	chr6_52495640_+	ENSG00000096093.13	ENST00000538167	hsa-miR-508-5p	52495634	52495640	7mer-m8	52495618	52495641	148.00	-21.25
CAediting_486655	chr6_52495658_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6807-5p	52495656	52495662	7mer-m8	52495643	52495663	146.00	-19.57
CAediting_486598	chr6_52492636_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1224-3p	52492633	52492640	8mer-1a	52492620	52492640	145.00	-16.43
CAediting_486598	chr6_52492636_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1260a	52492634	52492640	7mer-m8	52492624	52492641	156.00	-22.57
CAediting_486598	chr6_52492636_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1260b	52492634	52492640	7mer-m8	52492623	52492641	148.00	-17.28
CAediting_486598	chr6_52492636_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3156-3p	52492635	52492640	6mer	52492621	52492641	142.00	-14.75
CAediting_486598	chr6_52492636_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3156-3p	52492635	52492640	6mer	52492621	52492641	142.00	-14.75
CAediting_486600	chr6_52492656_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4666b	52492652	52492657	6mer	52492636	52492658	145.00	-23.41
CAediting_486600	chr6_52492656_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6076	52492650	52492657	8mer-1a	52492636	52492657	171.00	-26.47
CAediting_486600	chr6_52492656_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6797-3p	52492650	52492657	8mer-1a	52492636	52492657	140.00	-16.71
CAediting_486605	chr6_52492715_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1199-5p	52492708	52492714	7mer-m8	52492696	52492715	156.00	-28.57
CAediting_486605	chr6_52492715_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3622a-3p	52492711	52492718	8mer-1a	52492697	52492718	148.00	-22.84
CAediting_486605	chr6_52492715_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3622b-3p	52492711	52492718	8mer-1a	52492698	52492718	159.00	-27.17
CAediting_486605	chr6_52492715_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6751-3p	52492708	52492714	7mer-m8	52492695	52492715	141.00	-14.32
CAediting_486609	chr6_52492754_+	ENSG00000096093.13	ENST00000538167	hsa-miR-370-3p	52492751	52492757	7mer-m8	52492737	52492758	144.00	-24.38
CAediting_486609	chr6_52492754_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6893-3p	52492751	52492757	7mer-m8	52492738	52492758	157.00	-20.31
CAediting_486612	chr6_52492763_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1199-5p	52492756	52492762	7mer-m8	52492742	52492763	145.00	-24.20
CAediting_486612	chr6_52492763_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6751-3p	52492756	52492762	7mer-m8	52492744	52492763	156.00	-22.46
CAediting_486613	chr6_52492767_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6770-3p	52492763	52492769	7mer-m8	52492749	52492770	154.00	-20.39
CAediting_486613	chr6_52492767_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6770-3p	52492763	52492769	7mer-m8	52492749	52492770	154.00	-20.39
CAediting_486613	chr6_52492767_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6770-3p	52492763	52492769	7mer-m8	52492749	52492770	154.00	-20.39
CAediting_486618	chr6_52493487_+	ENSG00000096093.13	ENST00000538167	hsa-miR-374b-3p	52493484	52493491	8mer-1a	52493469	52493491	151.00	-12.96
CAediting_486618	chr6_52493487_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4756-3p	52493480	52493486	7mer-m8	52493466	52493487	154.00	-15.00
CAediting_486619	chr6_52493490_+	ENSG00000096093.13	ENST00000538167	hsa-miR-222-5p	52493484	52493491	8mer-1a	52493469	52493491	150.00	-13.70
CAediting_486619	chr6_52493490_+	ENSG00000096093.13	ENST00000538167	hsa-miR-30d-3p	52493486	52493493	8mer-1a	52493471	52493493	170.00	-17.99
CAediting_486619	chr6_52493490_+	ENSG00000096093.13	ENST00000538167	hsa-miR-30e-3p	52493486	52493493	8mer-1a	52493471	52493493	167.00	-15.10
CAediting_486619	chr6_52493490_+	ENSG00000096093.13	ENST00000538167	hsa-miR-936	52493483	52493490	8mer-1a	52493469	52493490	146.00	-19.19
CAediting_486623	chr6_52493502_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5003-3p	52493496	52493502	7mer-m8	52493485	52493503	160.00	-13.12
CAediting_486623	chr6_52493502_+	ENSG00000096093.13	ENST00000538167	hsa-miR-627-3p	52493495	52493501	7mer-m8	52493483	52493502	142.00	-7.96
CAediting_486624	chr6_52493505_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3190-5p	52493503	52493509	7mer-m8	52493491	52493510	143.00	-16.53
CAediting_486624	chr6_52493505_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548s	52493502	52493508	7mer-m8	52493487	52493509	153.00	-13.52
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-941	52493505	52493511	7mer-m8	52493490	52493512	146.00	-22.97
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-941	52493505	52493511	7mer-m8	52493490	52493512	146.00	-22.97
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-941	52493505	52493511	7mer-m8	52493490	52493512	146.00	-22.97
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-941	52493505	52493511	7mer-m8	52493490	52493512	146.00	-22.97
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-941	52493505	52493511	7mer-m8	52493490	52493512	146.00	-22.97
CAediting_486629	chr6_52493548_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3943	52493545	52493551	7mer-m8	52493531	52493552	147.00	-22.15
CAediting_486630	chr6_52493554_+	ENSG00000096093.13	ENST00000538167	hsa-miR-498-5p	52493549	52493555	7mer-m8	52493534	52493556	145.00	-19.43
CAediting_486632	chr6_52493556_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3156-3p	52493554	52493560	7mer-m8	52493543	52493561	148.00	-22.47
CAediting_486632	chr6_52493556_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3156-3p	52493554	52493560	7mer-m8	52493543	52493561	148.00	-22.47
CAediting_486634	chr6_52493563_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6749-3p	52493557	52493563	7mer-m8	52493542	52493564	143.00	-22.10
CAediting_486638	chr6_52493573_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4437	52493569	52493575	7mer-m8	52493556	52493576	146.00	-17.42
CAediting_486638	chr6_52493573_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5088-5p	52493570	52493576	7mer-m8	52493553	52493577	162.00	-26.31
CAediting_486639	chr6_52493584_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1281	52493577	52493583	7mer-m8	52493568	52493584	140.00	-16.17
CAediting_486640	chr6_52493586_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6747-3p	52493579	52493585	7mer-m8	52493566	52493586	146.00	-18.95
CAediting_486640	chr6_52493586_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6752-3p	52493580	52493586	7mer-m8	52493567	52493587	152.00	-20.90
CAediting_486640	chr6_52493586_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6801-3p	52493581	52493587	7mer-m8	52493569	52493588	148.00	-23.91
CAediting_486640	chr6_52493586_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6810-3p	52493581	52493587	7mer-m8	52493565	52493588	157.00	-24.94
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511a-3p	52493592	52493597	6mer	52493577	52493598	144.00	-26.09
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511a-3p	52493592	52493597	6mer	52493577	52493598	144.00	-26.09
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511a-3p	52493592	52493597	6mer	52493577	52493598	144.00	-26.09
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511a-3p	52493592	52493597	6mer	52493577	52493598	144.00	-26.09
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511b-3p	52493592	52493597	6mer	52493576	52493598	148.00	-28.92
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6511b-3p	52493592	52493597	6mer	52493576	52493598	148.00	-28.92
CAediting_486641	chr6_52493593_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6784-3p	52493592	52493597	6mer	52493576	52493598	151.00	-31.52
CAediting_486642	chr6_52493597_+	ENSG00000096093.13	ENST00000538167	hsa-miR-324-3p	52493590	52493596	7mer-m8	52493575	52493597	149.00	-25.69
CAediting_486643	chr6_52493601_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4638-5p	52493596	52493603	8mer-1a	52493584	52493603	146.00	-20.28
CAediting_486647	chr6_52493644_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6838-3p	52493641	52493647	7mer-m8	52493630	52493648	168.00	-24.31
CAediting_486652	chr6_52495639_+	ENSG00000096093.13	ENST00000538167	hsa-miR-324-5p	52495636	52495642	7mer-m8	52495621	52495643	151.00	-24.63
CAediting_486654	chr6_52495653_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4701-5p	52495649	52495655	7mer-m8	52495634	52495656	155.00	-21.81
CAediting_486654	chr6_52495653_+	ENSG00000096093.13	ENST00000538167	hsa-miR-588	52495649	52495655	7mer-m8	52495636	52495656	145.00	-18.09
CAediting_486659	chr6_52495675_+	ENSG00000096093.13	ENST00000538167	hsa-miR-12119	52495669	52495675	7mer-m8	52495651	52495676	162.00	-22.14
CAediting_486659	chr6_52495675_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1289	52495674	52495679	6mer	52495666	52495688	141.00	-26.35
CAediting_486659	chr6_52495675_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1289	52495674	52495679	6mer	52495666	52495688	141.00	-26.35
CAediting_486659	chr6_52495675_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4294	52495673	52495679	7mer-m8	52495661	52495680	145.00	-17.20
CAediting_486659	chr6_52495675_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4649-3p	52495668	52495675	8mer-1a	52495656	52495675	146.00	-18.18
CAediting_486661	chr6_52495722_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5690	52495715	52495721	7mer-m8	52495702	52495722	145.00	-18.27
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4661-5p	52492775	52492781	7mer-m8	52492763	52492782	145.00	-14.64
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548ae-3p	52492779	52492786	8mer-1a	52492766	52492786	141.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548ae-3p	52492779	52492786	8mer-1a	52492766	52492786	141.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548ah-3p	52492779	52492786	8mer-1a	52492764	52492786	143.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548aj-3p	52492779	52492786	8mer-1a	52492766	52492786	141.00	-8.47
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548aj-3p	52492779	52492786	8mer-1a	52492766	52492786	141.00	-8.47
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548am-3p	52492779	52492786	8mer-1a	52492764	52492786	143.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548aq-3p	52492779	52492786	8mer-1a	52492765	52492786	141.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548j-3p	52492779	52492786	8mer-1a	52492766	52492786	141.00	-5.97
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548x-3p	52492779	52492786	8mer-1a	52492767	52492786	141.00	-8.47
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548x-3p	52492779	52492786	8mer-1a	52492767	52492786	141.00	-8.47
CAediting_486615	chr6_52492781_+	ENSG00000096093.13	ENST00000538167	hsa-miR-7844-5p	52492777	52492783	7mer-m8	52492763	52492784	160.00	-18.30
CAediting_486617	chr6_52492879_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6782-3p	52492874	52492880	7mer-m8	52492859	52492881	140.00	-13.76
CAediting_486633	chr6_52493561_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3679-3p	52493557	52493563	7mer-m8	52493543	52493564	159.00	-19.40
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-125a-5p	52495732	52495738	7mer-m8	52495716	52495739	150.00	-23.51
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-125b-5p	52495732	52495738	7mer-m8	52495718	52495739	150.00	-21.64
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-125b-5p	52495732	52495738	7mer-m8	52495718	52495739	150.00	-21.64
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-331-3p	52495734	52495739	6mer	52495717	52495740	150.00	-28.21
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3679-3p	52495736	52495742	7mer-m8	52495724	52495743	141.00	-13.53
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4319	52495732	52495738	7mer-m8	52495721	52495739	141.00	-18.29
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4324	52495731	52495737	7mer-m8	52495719	52495738	150.00	-22.28

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-10a-5p	52495610	52495616	7mer-m8	52495597	52495617	142	-12.89
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-10b-5p	52495610	52495616	7mer-m8	52495590	52495617	145	-13.87
CAediting_486614	chr6_52492776_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1285-3p	52492770	52492776	7mer-m8	52492756	52492777	140	-18.26
CAediting_486614	chr6_52492776_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1285-3p	52492770	52492776	7mer-m8	52492756	52492777	140	-18.26
CAediting_486657	chr6_52495668_+	ENSG00000096093.13	ENST00000538167	hsa-miR-17-3p	52495662	52495668	7mer-m8	52495650	52495669	153	-16.32
CAediting_486633	chr6_52493561_+	ENSG00000096093.13	ENST00000538167	hsa-miR-2116-3p	52493555	52493562	8mer-1a	52493544	52493562	143	-22.67
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-2276-5p	52495734	52495741	8mer-1a	52495722	52495741	152	-20.98
CAediting_486608	chr6_52492753_+	ENSG00000096093.13	ENST00000538167	hsa-miR-2355-3p	52492748	52492753	6mer	52492732	52492754	151	-21.46
CAediting_486609	chr6_52492754_+	ENSG00000096093.13	ENST00000538167	hsa-miR-2355-3p	52492748	52492753	6mer	52492732	52492754	151	-21.46
CAediting_486656	chr6_52495663_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3174	52495659	52495664	6mer	52495643	52495665	142	-20.53
CAediting_486614	chr6_52492776_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3187-5p	52492770	52492776	7mer-m8	52492756	52492777	155	-26.48
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3198	52493644	52493650	7mer-m8	52493630	52493651	147	-14.48
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3198	52493644	52493650	7mer-m8	52493630	52493651	147	-14.48
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-339-5p	52495609	52495615	7mer-m8	52495595	52495616	151	-19.35
CAediting_486604	chr6_52492714_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3614-5p	52492712	52492718	7mer-1a	52492695	52492718	143	-17.7
CAediting_486605	chr6_52492715_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3614-5p	52492712	52492718	7mer-1a	52492695	52492718	143	-17.7
CAediting_486606	chr6_52492732_+	ENSG00000096093.13	ENST00000538167	hsa-miR-3616-5p	52492725	52492732	8mer-1a	52492711	52492732	140	-10.72
CAediting_486601	chr6_52492693_+	ENSG00000096093.13	ENST00000538167	hsa-miR-376a-3p	52492686	52492693	8mer-1a	52492668	52492693	149	-15.28
CAediting_486601	chr6_52492693_+	ENSG00000096093.13	ENST00000538167	hsa-miR-376a-3p	52492686	52492693	8mer-1a	52492668	52492693	149	-15.28
CAediting_486601	chr6_52492693_+	ENSG00000096093.13	ENST00000538167	hsa-miR-376b-3p	52492686	52492693	8mer-1a	52492667	52492693	145	-13.14
CAediting_486606	chr6_52492732_+	ENSG00000096093.13	ENST00000538167	hsa-miR-377-5p	52492730	52492736	7mer-m8	52492716	52492737	152	-14.59
CAediting_486642	chr6_52493597_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4284	52493593	52493600	8mer-1a	52493583	52493600	151	-16.7
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4309	52493644	52493650	7mer-m8	52493634	52493651	147	-13.35
CAediting_486646	chr6_52493643_+	ENSG00000096093.13	ENST00000538167	hsa-miR-431-5p	52493640	52493646	7mer-m8	52493629	52493647	147	-17.87
CAediting_486647	chr6_52493644_+	ENSG00000096093.13	ENST00000538167	hsa-miR-431-5p	52493640	52493646	7mer-m8	52493629	52493647	147	-17.87
CAediting_486608	chr6_52492753_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4433b-5p	52492746	52492753	8mer-1a	52492733	52492753	142	-13.26
CAediting_486616	chr6_52492869_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4478	52492866	52492872	7mer-m8	52492857	52492873	155	-27.56
CAediting_486627	chr6_52493537_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4505	52493533	52493540	8mer-1a	52493522	52493540	142	-20.61
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4534	52493646	52493652	7mer-m8	52493637	52493653	140	-16.53
CAediting_486608	chr6_52492753_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4646-3p	52492747	52492753	7mer-m8	52492734	52492754	140	-10.85
CAediting_486609	chr6_52492754_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4646-3p	52492747	52492753	7mer-m8	52492734	52492754	140	-10.85
CAediting_486603	chr6_52492700_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4649-3p	52492694	52492701	8mer-1a	52492681	52492701	142	-14.87
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4708-5p	52493649	52493655	7mer-1a	52493635	52493655	142	-19.38
CAediting_486633	chr6_52493561_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4713-5p	52493556	52493563	8mer-1a	52493543	52493563	154	-25.69
CAediting_486634	chr6_52493563_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4713-5p	52493556	52493563	8mer-1a	52493543	52493563	154	-25.69
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4725-5p	52495611	52495617	7mer-m8	52495598	52495618	140	-15.96
CAediting_486622	chr6_52493501_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4735-5p	52493499	52493505	7mer-m8	52493485	52493506	140	-5.48
CAediting_486623	chr6_52493502_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4735-5p	52493499	52493505	7mer-m8	52493485	52493506	140	-5.48
CAediting_486624	chr6_52493505_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4735-5p	52493499	52493505	7mer-m8	52493485	52493506	140	-5.48
CAediting_486624	chr6_52493505_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4794	52493503	52493509	7mer-m8	52493489	52493510	140	-14.83
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4794	52493503	52493509	7mer-m8	52493489	52493510	140	-14.83
CAediting_486657	chr6_52495668_+	ENSG00000096093.13	ENST00000538167	hsa-miR-485-5p	52495666	52495673	8mer-1a	52495653	52495673	154	-17.39
CAediting_486616	chr6_52492869_+	ENSG00000096093.13	ENST00000538167	hsa-miR-485-5p	52492867	52492873	7mer-m8	52492853	52492874	153	-20.25
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-504-5p	52495611	52495617	7mer-m8	52495596	52495618	146	-19.1
CAediting_486614	chr6_52492776_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5189-5p	52492770	52492776	7mer-m8	52492755	52492777	154	-21.45
CAediting_486597	chr6_52492634_+	ENSG00000096093.13	ENST00000538167	hsa-miR-520f-5p	52492628	52492635	8mer-1a	52492614	52492635	152	-10.04
CAediting_486599	chr6_52492646_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5586-3p	52492643	52492649	7mer-m8	52492629	52492650	146	-15.51
CAediting_486654	chr6_52495653_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5587-5p	52495649	52495655	7mer-m8	52495637	52495656	144	-20.38
CAediting_486607	chr6_52492744_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5690	52492741	52492747	7mer-m8	52492728	52492748	145	-16.35
CAediting_486645	chr6_52493638_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5691	52493636	52493643	8mer-1a	52493623	52493643	147	-19.02
CAediting_486646	chr6_52493643_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5691	52493636	52493643	8mer-1a	52493623	52493643	147	-19.02
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-5699-3p	52495608	52495614	7mer-m8	52495594	52495615	146	-16.39
CAediting_486606	chr6_52492732_+	ENSG00000096093.13	ENST00000538167	hsa-miR-573	52492725	52492732	8mer-1a	52492707	52492732	148	-12.98
CAediting_486606	chr6_52492732_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6086	52492730	52492736	7mer-m8	52492719	52492737	152	-24.45
CAediting_486662	chr6_52495738_+	ENSG00000096093.13	ENST00000538167	hsa-miR-642a-5p	52495735	52495742	8mer-1a	52495719	52495742	143	-15.99
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6514-5p	52493645	52493651	7mer-m8	52493627	52493652	148	-18.66
CAediting_486624	chr6_52493505_+	ENSG00000096093.13	ENST00000538167	hsa-miR-664a-5p	52493503	52493509	7mer-m8	52493487	52493510	141	-13.02
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-664a-5p	52493503	52493509	7mer-m8	52493487	52493510	141	-13.02
CAediting_486625	chr6_52493509_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6765-3p	52493506	52493512	7mer-m8	52493493	52493513	152	-20.77
CAediting_486645	chr6_52493638_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6773-3p	52493632	52493639	8mer-1a	52493618	52493639	142	-15.63
CAediting_486629	chr6_52493548_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6778-3p	52493544	52493550	7mer-m8	52493532	52493551	141	-15.45
CAediting_486645	chr6_52493638_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6805-3p	52493636	52493643	8mer-1a	52493621	52493643	154	-21.46
CAediting_486646	chr6_52493643_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6805-3p	52493636	52493643	8mer-1a	52493621	52493643	154	-21.46
CAediting_486649	chr6_52495609_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6818-3p	52495606	52495612	7mer-m8	52495592	52495613	140	-16.61
CAediting_486650	chr6_52495613_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6818-3p	52495606	52495612	7mer-m8	52495592	52495613	140	-16.61
CAediting_486638	chr6_52493573_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6823-5p	52493571	52493577	7mer-m8	52493559	52493578	152	-19.41
CAediting_486629	chr6_52493548_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6829-3p	52493545	52493550	6mer	52493532	52493551	143	-22.32
CAediting_486618	chr6_52493487_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6832-5p	52493481	52493487	7mer-m8	52493466	52493488	142	-11.86
CAediting_486639	chr6_52493584_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6836-3p	52493577	52493583	7mer-m8	52493564	52493584	140	-15.14
CAediting_486627	chr6_52493537_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6842-3p	52493534	52493540	7mer-m8	52493518	52493541	142	-21.42
CAediting_486628	chr6_52493541_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6842-3p	52493534	52493540	7mer-m8	52493518	52493541	142	-21.42
CAediting_486614	chr6_52492776_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6860	52492770	52492776	7mer-m8	52492757	52492777	154	-24.46
CAediting_486657	chr6_52495668_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6884-5p	52495666	52495673	8mer-1a	52495651	52495673	154	-22.04
CAediting_486616	chr6_52492869_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6884-5p	52492867	52492873	7mer-m8	52492854	52492874	155	-21.16
CAediting_486629	chr6_52493548_+	ENSG00000096093.13	ENST00000538167	hsa-miR-7109-3p	52493546	52493553	8mer-1a	52493532	52493553	146	-14.65
CAediting_486626	chr6_52493531_+	ENSG00000096093.13	ENST00000538167	hsa-miR-7151-3p	52493524	52493530	7mer-m8	52493511	52493531	140	-18.3
CAediting_486616	chr6_52492869_+	ENSG00000096093.13	ENST00000538167	hsa-miR-7160-5p	52492864	52492870	7mer-m8	52492851	52492871	150	-18.56
CAediting_486616	chr6_52492869_+	ENSG00000096093.13	ENST00000538167	hsa-miR-7162-3p	52492863	52492869	7mer-m8	52492852	52492870	155	-18.02
CAediting_486599	chr6_52492646_+	ENSG00000096093.13	ENST00000538167	hsa-miR-759	52492644	52492650	7mer-m8	52492629	52492651	146	-15.27
CAediting_486626	chr6_52493531_+	ENSG00000096093.13	ENST00000538167	hsa-miR-8052	52493530	52493536	7mer-1a	52493516	52493536	145	-25.46
CAediting_486635	chr6_52493564_+	ENSG00000096093.13	ENST00000538167	hsa-miR-8062	52493562	52493568	7mer-m8	52493549	52493569	144	-9.63
CAediting_486636	chr6_52493567_+	ENSG00000096093.13	ENST00000538167	hsa-miR-8062	52493562	52493568	7mer-m8	52493549	52493569	144	-9.63
CAediting_486648	chr6_52493651_+	ENSG00000096093.13	ENST00000538167	hsa-miR-8082	52493646	52493652	7mer-m8	52493631	52493653	143	-19.14

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000096093.13	ENST00000538167	hsa-miR-605-3p	52493892	52493898	7mer-m8	52493879	52493899	142	-15.96
CAediting_688081	chr9_63819627_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4477b	52493934	52493940	7mer-m8	52493920	52493941	140	-9.16
CAediting_688081	chr9_63819627_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4477b	52493007	52493013	7mer-m8	52492991	52493014	149	-14.4
CAediting_1229413	chr17_67471544_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548aa	52494798	52494804	7mer-m8	52494780	52494805	156	-12.93
CAediting_1229415	chr17_67471547_+	ENSG00000096093.13	ENST00000538167	hsa-miR-548aa	52493754	52493760	7mer-m8	52493737	52493761	140	-15.2
CAediting_1351755	chr19_40282625_-	ENSG00000096093.13	ENST00000538167	hsa-miR-641	52494124	52494131	8mer-1a	52494106	52494131	151	-18.5
CAediting_77128	chr1_85133844_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4423-3p	52494658	52494664	7mer-m8	52494645	52494665	142	-13.4
CAediting_77128	chr1_85133844_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4423-3p	52492906	52492912	7mer-m8	52492893	52492913	140	-14.46
CAediting_228905	chr2_188297554_+	ENSG00000096093.13	ENST00000538167	hsa-miR-561-3p	52495006	52495011	6mer	52494988	52495012	142	-11.9
CAediting_442554	chr5_154685830_+	ENSG00000096093.13	ENST00000538167	hsa-miR-1303	52495271	52495278	8mer-1a	52495255	52495278	144	-16.67
CAediting_468389	chr6_31355314_-	ENSG00000096093.13	ENST00000538167	hsa-miR-6891-5p	52493024	52493030	7mer-m8	52493013	52493031	140	-16.55

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000096093.13	ENST00000538167	hsa-miR-320e	52493960	52493967	8mer-1a	52493949	52493967	145	-13.87
CAediting_1368054	chr19_46709310_-	ENSG00000096093.13	ENST00000538167	hsa-miR-320e	52493271	52493277	7mer-m8	52493261	52493278	141	-15.67
CAediting_688080	chr9_63819626_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4477b	52495436	52495442	7mer-m8	52495422	52495443	140	-7.55
CAediting_688081	chr9_63819627_+	ENSG00000096093.13	ENST00000538167	hsa-miR-4477b	52495436	52495442	7mer-m8	52495422	52495443	140	-7.55
CAediting_748296	chr10_51299626_+	ENSG00000096093.13	ENST00000538167	hsa-miR-605-3p	52493133	52493140	8mer-1a	52493119	52493140	152	-11.07
CAediting_580943	chr7_100356700_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6840-3p	52492703	52492709	7mer-m8	52492689	52492710	155	-23.16
CAediting_580943	chr7_100356700_+	ENSG00000096093.13	ENST00000538167	hsa-miR-6840-3p	52493261	52493267	7mer-m8	52493247	52493268	140	-21.05

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for EFHC1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000371068.8	protein_coding
ENST00000538167.2	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_486597	ENST00000371068.8	chr6_52492634_+	-1674.00	-1674.90	-1737.10
CAediting_486598	ENST00000371068.8	chr6_52492636_+	-1674.30	-1674.90	-1737.10
CAediting_486599	ENST00000371068.8	chr6_52492646_+	-1678.50	-1674.90	-1737.10
CAediting_486600	ENST00000371068.8	chr6_52492656_+	-1677.50	-1674.90	-1737.10
CAediting_486601	ENST00000371068.8	chr6_52492693_+	-1677.50	-1674.90	-1737.10
CAediting_486602	ENST00000371068.8	chr6_52492694_+	-1675.00	-1674.90	-1737.10
CAediting_486603	ENST00000371068.8	chr6_52492700_+	-1675.90	-1674.90	-1737.10
CAediting_486604	ENST00000371068.8	chr6_52492714_+	-1674.60	-1674.90	-1737.10
CAediting_486605	ENST00000371068.8	chr6_52492715_+	-1674.60	-1674.90	-1737.10
CAediting_486606	ENST00000371068.8	chr6_52492732_+	-1674.90	-1674.90	-1737.10
CAediting_486607	ENST00000371068.8	chr6_52492744_+	-1681.50	-1674.90	-1737.10
CAediting_486608	ENST00000371068.8	chr6_52492753_+	-1674.90	-1674.90	-1737.10
CAediting_486609	ENST00000371068.8	chr6_52492754_+	-1674.20	-1674.90	-1737.10
CAediting_486610	ENST00000371068.8	chr6_52492756_+	-1674.20	-1674.90	-1737.10
CAediting_486611	ENST00000371068.8	chr6_52492762_+	-1675.60	-1674.90	-1737.10
CAediting_486612	ENST00000371068.8	chr6_52492763_+	-1677.50	-1674.90	-1737.10
CAediting_486613	ENST00000371068.8	chr6_52492767_+	-1674.50	-1674.90	-1737.10
CAediting_486614	ENST00000371068.8	chr6_52492776_+	-1678.80	-1674.90	-1737.10
CAediting_486615	ENST00000371068.8	chr6_52492781_+	-1674.90	-1674.90	-1737.10
CAediting_486616	ENST00000371068.8	chr6_52492869_+	-1674.20	-1674.90	-1737.10
CAediting_486617	ENST00000371068.8	chr6_52492879_+	-1676.70	-1674.90	-1737.10
CAediting_486618	ENST00000371068.8	chr6_52493487_+	-1675.40	-1674.90	-1737.10
CAediting_486619	ENST00000371068.8	chr6_52493490_+	-1674.90	-1674.90	-1737.10
CAediting_486620	ENST00000371068.8	chr6_52493494_+	-1677.60	-1674.90	-1737.10
CAediting_486621	ENST00000371068.8	chr6_52493496_+	-1674.50	-1674.90	-1737.10
CAediting_486622	ENST00000371068.8	chr6_52493501_+	-1675.00	-1674.90	-1737.10
CAediting_486623	ENST00000371068.8	chr6_52493502_+	-1674.90	-1674.90	-1737.10
CAediting_486624	ENST00000371068.8	chr6_52493505_+	-1674.60	-1674.90	-1737.10
CAediting_486625	ENST00000371068.8	chr6_52493509_+	-1678.80	-1674.90	-1737.10
CAediting_486626	ENST00000371068.8	chr6_52493531_+	-1674.90	-1674.90	-1737.10
CAediting_486627	ENST00000371068.8	chr6_52493537_+	-1674.20	-1674.90	-1737.10
CAediting_486628	ENST00000371068.8	chr6_52493541_+	-1675.20	-1674.90	-1737.10
CAediting_486629	ENST00000371068.8	chr6_52493548_+	-1674.00	-1674.90	-1737.10
CAediting_486630	ENST00000371068.8	chr6_52493554_+	-1680.30	-1674.90	-1737.10
CAediting_486631	ENST00000371068.8	chr6_52493555_+	-1676.00	-1674.90	-1737.10
CAediting_486632	ENST00000371068.8	chr6_52493556_+	-1680.80	-1674.90	-1737.10
CAediting_486633	ENST00000371068.8	chr6_52493561_+	-1674.00	-1674.90	-1737.10
CAediting_486634	ENST00000371068.8	chr6_52493563_+	-1681.80	-1674.90	-1737.10
CAediting_486635	ENST00000371068.8	chr6_52493564_+	-1675.20	-1674.90	-1737.10
CAediting_486636	ENST00000371068.8	chr6_52493567_+	-1674.50	-1674.90	-1737.10
CAediting_486637	ENST00000371068.8	chr6_52493572_+	-1674.00	-1674.90	-1737.10
CAediting_486638	ENST00000371068.8	chr6_52493573_+	-1681.60	-1674.90	-1737.10
CAediting_486639	ENST00000371068.8	chr6_52493584_+	-1675.70	-1674.90	-1737.10
CAediting_486640	ENST00000371068.8	chr6_52493586_+	-1674.00	-1674.90	-1737.10
CAediting_486641	ENST00000371068.8	chr6_52493593_+	-1673.50	-1674.90	-1737.10
CAediting_486642	ENST00000371068.8	chr6_52493597_+	-1673.90	-1674.90	-1737.10
CAediting_486643	ENST00000371068.8	chr6_52493601_+	-1674.90	-1674.90	-1737.10
CAediting_486644	ENST00000371068.8	chr6_52493602_+	-1681.10	-1674.90	-1737.10
CAediting_486645	ENST00000371068.8	chr6_52493638_+	-1674.20	-1674.90	-1737.10
CAediting_486646	ENST00000371068.8	chr6_52493643_+	-1679.10	-1674.90	-1737.10
CAediting_486647	ENST00000371068.8	chr6_52493644_+	-1674.40	-1674.90	-1737.10
CAediting_486648	ENST00000371068.8	chr6_52493651_+	-1674.50	-1674.90	-1737.10
CAediting_486649	ENST00000371068.8	chr6_52495609_+	-1677.50	-1674.90	-1737.10
CAediting_486650	ENST00000371068.8	chr6_52495613_+	-1674.80	-1674.90	-1737.10
CAediting_486651	ENST00000371068.8	chr6_52495621_+	-1675.70	-1674.90	-1737.10
CAediting_486652	ENST00000371068.8	chr6_52495639_+	-1677.10	-1674.90	-1737.10
CAediting_486653	ENST00000371068.8	chr6_52495640_+	-1678.10	-1674.90	-1737.10
CAediting_486654	ENST00000371068.8	chr6_52495653_+	-1675.70	-1674.90	-1737.10
CAediting_486655	ENST00000371068.8	chr6_52495658_+	-1676.70	-1674.90	-1737.10
CAediting_486656	ENST00000371068.8	chr6_52495663_+	-1674.60	-1674.90	-1737.10
CAediting_486657	ENST00000371068.8	chr6_52495668_+	-1675.60	-1674.90	-1737.10
CAediting_486658	ENST00000371068.8	chr6_52495674_+	-1675.10	-1674.90	-1737.10
CAediting_486659	ENST00000371068.8	chr6_52495675_+	-1677.80	-1674.90	-1737.10
CAediting_486660	ENST00000371068.8	chr6_52495718_+	-1675.10	-1674.90	-1737.10
CAediting_486661	ENST00000371068.8	chr6_52495722_+	-1679.40	-1674.90	-1737.10
CAediting_486662	ENST00000371068.8	chr6_52495738_+	-1677.20	-1674.90	-1737.10
CAediting_486597	ENST00000538167.2	chr6_52492634_+	-1609.30	-1610.20	-1673.10
CAediting_486598	ENST00000538167.2	chr6_52492636_+	-1609.60	-1610.20	-1673.10
CAediting_486599	ENST00000538167.2	chr6_52492646_+	-1613.80	-1610.20	-1673.10
CAediting_486600	ENST00000538167.2	chr6_52492656_+	-1612.80	-1610.20	-1673.10
CAediting_486601	ENST00000538167.2	chr6_52492693_+	-1612.80	-1610.20	-1673.10
CAediting_486602	ENST00000538167.2	chr6_52492694_+	-1610.30	-1610.20	-1673.10
CAediting_486603	ENST00000538167.2	chr6_52492700_+	-1611.20	-1610.20	-1673.10
CAediting_486604	ENST00000538167.2	chr6_52492714_+	-1609.90	-1610.20	-1673.10
CAediting_486605	ENST00000538167.2	chr6_52492715_+	-1609.90	-1610.20	-1673.10
CAediting_486606	ENST00000538167.2	chr6_52492732_+	-1610.20	-1610.20	-1673.10
CAediting_486607	ENST00000538167.2	chr6_52492744_+	-1616.80	-1610.20	-1673.10
CAediting_486608	ENST00000538167.2	chr6_52492753_+	-1610.20	-1610.20	-1673.10
CAediting_486609	ENST00000538167.2	chr6_52492754_+	-1609.50	-1610.20	-1673.10
CAediting_486610	ENST00000538167.2	chr6_52492756_+	-1609.50	-1610.20	-1673.10
CAediting_486611	ENST00000538167.2	chr6_52492762_+	-1610.90	-1610.20	-1673.10
CAediting_486612	ENST00000538167.2	chr6_52492763_+	-1612.80	-1610.20	-1673.10
CAediting_486613	ENST00000538167.2	chr6_52492767_+	-1609.80	-1610.20	-1673.10
CAediting_486614	ENST00000538167.2	chr6_52492776_+	-1614.10	-1610.20	-1673.10
CAediting_486615	ENST00000538167.2	chr6_52492781_+	-1610.20	-1610.20	-1673.10
CAediting_486616	ENST00000538167.2	chr6_52492869_+	-1609.50	-1610.20	-1673.10
CAediting_486617	ENST00000538167.2	chr6_52492879_+	-1612.00	-1610.20	-1673.10
CAediting_486618	ENST00000538167.2	chr6_52493487_+	-1610.70	-1610.20	-1673.10
CAediting_486619	ENST00000538167.2	chr6_52493490_+	-1610.20	-1610.20	-1673.10
CAediting_486620	ENST00000538167.2	chr6_52493494_+	-1612.90	-1610.20	-1673.10
CAediting_486621	ENST00000538167.2	chr6_52493496_+	-1609.80	-1610.20	-1673.10
CAediting_486622	ENST00000538167.2	chr6_52493501_+	-1610.30	-1610.20	-1673.10
CAediting_486623	ENST00000538167.2	chr6_52493502_+	-1610.20	-1610.20	-1673.10
CAediting_486624	ENST00000538167.2	chr6_52493505_+	-1609.90	-1610.20	-1673.10
CAediting_486625	ENST00000538167.2	chr6_52493509_+	-1614.10	-1610.20	-1673.10
CAediting_486626	ENST00000538167.2	chr6_52493531_+	-1610.20	-1610.20	-1673.10
CAediting_486627	ENST00000538167.2	chr6_52493537_+	-1609.50	-1610.20	-1673.10
CAediting_486628	ENST00000538167.2	chr6_52493541_+	-1610.50	-1610.20	-1673.10
CAediting_486629	ENST00000538167.2	chr6_52493548_+	-1609.30	-1610.20	-1673.10
CAediting_486630	ENST00000538167.2	chr6_52493554_+	-1615.60	-1610.20	-1673.10
CAediting_486631	ENST00000538167.2	chr6_52493555_+	-1611.30	-1610.20	-1673.10
CAediting_486632	ENST00000538167.2	chr6_52493556_+	-1616.10	-1610.20	-1673.10
CAediting_486633	ENST00000538167.2	chr6_52493561_+	-1609.30	-1610.20	-1673.10
CAediting_486634	ENST00000538167.2	chr6_52493563_+	-1617.10	-1610.20	-1673.10
CAediting_486635	ENST00000538167.2	chr6_52493564_+	-1610.50	-1610.20	-1673.10
CAediting_486636	ENST00000538167.2	chr6_52493567_+	-1609.80	-1610.20	-1673.10
CAediting_486637	ENST00000538167.2	chr6_52493572_+	-1609.30	-1610.20	-1673.10
CAediting_486638	ENST00000538167.2	chr6_52493573_+	-1616.90	-1610.20	-1673.10
CAediting_486639	ENST00000538167.2	chr6_52493584_+	-1611.00	-1610.20	-1673.10
CAediting_486640	ENST00000538167.2	chr6_52493586_+	-1609.30	-1610.20	-1673.10
CAediting_486641	ENST00000538167.2	chr6_52493593_+	-1608.80	-1610.20	-1673.10
CAediting_486642	ENST00000538167.2	chr6_52493597_+	-1609.20	-1610.20	-1673.10
CAediting_486643	ENST00000538167.2	chr6_52493601_+	-1610.20	-1610.20	-1673.10
CAediting_486644	ENST00000538167.2	chr6_52493602_+	-1616.40	-1610.20	-1673.10
CAediting_486645	ENST00000538167.2	chr6_52493638_+	-1609.50	-1610.20	-1673.10
CAediting_486646	ENST00000538167.2	chr6_52493643_+	-1614.40	-1610.20	-1673.10
CAediting_486647	ENST00000538167.2	chr6_52493644_+	-1609.70	-1610.20	-1673.10
CAediting_486648	ENST00000538167.2	chr6_52493651_+	-1609.80	-1610.20	-1673.10
CAediting_486649	ENST00000538167.2	chr6_52495609_+	-1612.00	-1610.20	-1673.10
CAediting_486650	ENST00000538167.2	chr6_52495613_+	-1609.50	-1610.20	-1673.10
CAediting_486651	ENST00000538167.2	chr6_52495621_+	-1611.70	-1610.20	-1673.10
CAediting_486652	ENST00000538167.2	chr6_52495639_+	-1611.90	-1610.20	-1673.10
CAediting_486653	ENST00000538167.2	chr6_52495640_+	-1613.40	-1610.20	-1673.10
CAediting_486654	ENST00000538167.2	chr6_52495653_+	-1610.60	-1610.20	-1673.10
CAediting_486655	ENST00000538167.2	chr6_52495658_+	-1611.30	-1610.20	-1673.10
CAediting_486656	ENST00000538167.2	chr6_52495663_+	-1610.10	-1610.20	-1673.10
CAediting_486657	ENST00000538167.2	chr6_52495668_+	-1610.60	-1610.20	-1673.10
CAediting_486658	ENST00000538167.2	chr6_52495674_+	-1611.10	-1610.20	-1673.10
CAediting_486659	ENST00000538167.2	chr6_52495675_+	-1613.10	-1610.20	-1673.10
CAediting_486660	ENST00000538167.2	chr6_52495718_+	-1611.60	-1610.20	-1673.10
CAediting_486661	ENST00000538167.2	chr6_52495722_+	-1615.40	-1610.20	-1673.10
CAediting_486662	ENST00000538167.2	chr6_52495738_+	-1611.70	-1610.20	-1673.10

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Relation with ADAR for EFHC1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_486602	chr6_52492694_+	0.00257731163268318	0.279722487743565	.	.	.	.
OV	CAediting_486602	chr6_52492694_+	0.0252544106595671	0.183908129108298	.	.	.	.
BRCA	CAediting_486603	chr6_52492700_+	0.0401645289721964	0.288358415181697	.	.	.	.
BRCA	CAediting_486607	chr6_52492744_+	0.00521746064227349	0.252429862337604	.	.	.	.
KIRP	CAediting_486607	chr6_52492744_+	0.0253590994663224	0.235647689503982	.	.	.	.
OV	CAediting_486607	chr6_52492744_+	1.91550006387476e-05	0.307852439359666	.	.	.	.
OV	CAediting_486624	chr6_52493505_+	0.0292586774547457	0.189820030123076	.	.	.	.
OV	CAediting_486626	chr6_52493531_+	0.0116926249325379	0.235406088472629	.	.	.	.
KIRP	CAediting_486643	chr6_52493601_+	.	.	0.0271250666737644	0.229177261662685	.	.
LGG	CAediting_486644	chr6_52493602_+	.	.	.	.	0.0115676727404309	0.206367725670589
BRCA	CAediting_486644	chr6_52493602_+	1.83095048561344e-05	0.347659267247177	.	.	.	.
THCA	CAediting_486644	chr6_52493602_+	1.0170393783132e-05	0.269414908434574	.	.	.	.
KIRC	CAediting_486644	chr6_52493602_+	0.0333896710971591	0.202119725095412	0.0152012277485043	0.229919711323665	.	.
KIRP	CAediting_486644	chr6_52493602_+	0.000643394392350812	0.283982732585287	8.06908423863251e-06	0.366012189254377	.	.
OV	CAediting_486644	chr6_52493602_+	0.000454460346878897	0.24999032399122	.	.	.	.
THCA	CAediting_486651	chr6_52495621_+	2.58601212356169e-05	0.284632350998053	.	.	.	.
KIRC	CAediting_486651	chr6_52495621_+	0.0307048545054431	0.234572445192117	.	.	.	.
UCEC	CAediting_486651	chr6_52495621_+	0.0220661989721284	0.288041273730523	.	.	.	.
KIRP	CAediting_486651	chr6_52495621_+	1.17872366621813e-05	0.369852987799552	.	.	.	.
OV	CAediting_486651	chr6_52495621_+	0.0137261215113874	0.220802950578969	.	.	.	.
THYM	CAediting_486651	chr6_52495621_+	.	.	0.0114164390957264	0.351555476198429	.	.
THCA	CAediting_486653	chr6_52495640_+	0.000507283721665074	0.274334348766574	.	.	.	.
UCEC	CAediting_486655	chr6_52495658_+	0.000811735633788175	0.458519753697383	.	.	0.0290809017675333	0.308858742365683
KIRP	CAediting_486655	chr6_52495658_+	.	.	0.000275860026051849	0.351164046287256	.	.
OV	CAediting_486655	chr6_52495658_+	0.0141165288117572	0.227344368920984	0.0217598535595134	0.212899169093806	.	.
LGG	CAediting_486660	chr6_52495718_+	.	.	4.9674267606592e-05	0.284162195139412	.	.
LGG	CAediting_486661	chr6_52495722_+	0.000628484382848946	0.213524668725592	.	.	.	.
BRCA	CAediting_486661	chr6_52495722_+	0.00957677481438256	0.314358211723097	.	.	.	.
THCA	CAediting_486661	chr6_52495722_+	0.00663871103128561	0.262131207053936	.	.	.	.

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Relation with cancer stages for EFHC1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_486661	chr6_52495722_+	0.0228203542007742	0.282069300068365
KIRP	pathologic_stage	CAediting_486650	chr6_52495613_+	0.0223134132033463	0.304910879407563
KIRP	pathologic_stage	CAediting_486653	chr6_52495640_+	0.0459457850871456	0.195237408792844
THCA	pathologic_stage	CAediting_486650	chr6_52495613_+	0.0265856365353617	0.222891074959388

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Relation with survival for EFHC1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_486643	chr6_52493601_+	0.00270067238125815	0.0021548	0.00531316
UCEC	CAediting_486651	chr6_52495621_+	0.0108614365803433	0.0366983	864.332
KIRP	CAediting_486655	chr6_52495658_+	0.0264903135392917	0.0304533	1.15747e-05

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RelatedDrugs for EFHC1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for EFHC1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
EFHC1	C0270853	Juvenile Myoclonic Epilepsy	10	CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
EFHC1	C2750892	EPILEPSY, JUVENILE ABSENCE, SUSCEPTIBILITY TO, 1	3	GENOMICS_ENGLAND;ORPHANET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene