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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CHRNB4 (CAeditome ID:1143) |
Gene summary for CHRNB4 |
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Gene information | Gene symbol | CHRNB4 | Gene ID | 1143 |
Gene name | cholinergic receptor nicotinic beta 4 subunit | |
Synonyms | - | |
Cytomap | 15q25.1 | |
Type of gene | protein-coding | |
Description | neuronal acetylcholine receptor subunit beta-4acetylcholine receptor, nicotinic, beta 4 (neuronal)cholinergic receptor, nicotinic, beta 4 (neuronal)cholinergic receptor, nicotinic, beta polypeptide 4neuronal nicotinic receptor beta 4 subunit | |
Modification date | 20210518 | |
UniProtAcc | P30926 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CHRNB4 | GO:0015464 | Neuronal acetylcholine receptor subunit beta-4 | 8906617 |
CHRNB4 | GO:0022848 | Neuronal acetylcholine receptor subunit beta-4 | 18387948 |
CHRNB4 | GO:0007165 | Neuronal acetylcholine receptor subunit beta-4 | 8906617 |
CHRNB4 | GO:0005892 | Neuronal acetylcholine receptor subunit beta-4 | 8906617 |
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RNA A-to-I events for CHRNB4 |
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CAediting_1064478(78624492, -), CAediting_1064479(78624499, -), CAediting_1064480(78624505, -), CAediting_1064481(78624506, -), CAediting_1064482(78624508, -), CAediting_1064483(78624511, -), CAediting_1064484(78624514, -), CAediting_1064485(78624520, -), CAediting_1064486(78624521, -), CAediting_1064487(78624539, -), CAediting_1064488(78624546, -), CAediting_1064489(78624547, -), CAediting_1064490(78624548, -), CAediting_1064491(78624561, -), CAediting_1064492(78624567, -), CAediting_1064493(78624573, -), CAediting_1064494(78624594, -), CAediting_1064495(78624595, -), CAediting_1064496(78624599, -), CAediting_1064497(78624608, -), CAediting_1064498(78624621, -), CAediting_1064499(78624631, -), CAediting_1064500(78624635, -), CAediting_1064501(78624642, -), CAediting_1064502(78624643, -), CAediting_1064503(78624660, -), CAediting_1064504(78624661, -), CAediting_1064505(78643317, -), CAediting_1064506(78643322, -), |
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RNA editing positional annotations for CHRNB4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1064478 | chr15_78624492_- | UTR3 |
CAediting_1064479 | chr15_78624499_- | UTR3 |
CAediting_1064480 | chr15_78624505_- | UTR3 |
CAediting_1064481 | chr15_78624506_- | UTR3 |
CAediting_1064482 | chr15_78624508_- | UTR3 |
CAediting_1064483 | chr15_78624511_- | UTR3 |
CAediting_1064484 | chr15_78624514_- | UTR3 |
CAediting_1064485 | chr15_78624520_- | UTR3 |
CAediting_1064486 | chr15_78624521_- | UTR3 |
CAediting_1064487 | chr15_78624539_- | UTR3 |
CAediting_1064488 | chr15_78624546_- | UTR3 |
CAediting_1064489 | chr15_78624547_- | UTR3 |
CAediting_1064490 | chr15_78624548_- | UTR3 |
CAediting_1064491 | chr15_78624561_- | UTR3 |
CAediting_1064492 | chr15_78624567_- | UTR3 |
CAediting_1064493 | chr15_78624573_- | UTR3 |
CAediting_1064494 | chr15_78624594_- | UTR3 |
CAediting_1064495 | chr15_78624595_- | UTR3 |
CAediting_1064496 | chr15_78624599_- | UTR3 |
CAediting_1064497 | chr15_78624608_- | UTR3 |
CAediting_1064498 | chr15_78624621_- | UTR3 |
CAediting_1064499 | chr15_78624631_- | UTR3 |
CAediting_1064500 | chr15_78624635_- | UTR3 |
CAediting_1064501 | chr15_78624642_- | UTR3 |
CAediting_1064502 | chr15_78624643_- | UTR3 |
CAediting_1064503 | chr15_78624660_- | UTR3 |
CAediting_1064504 | chr15_78624661_- | UTR3 |
CAediting_1064505 | chr15_78643317_- | ncRNA_intronic |
CAediting_1064506 | chr15_78643322_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1064478 | chr15_78624492_- | SINE | Alu | AluSx1 |
CAediting_1064479 | chr15_78624499_- | SINE | Alu | AluSx1 |
CAediting_1064480 | chr15_78624505_- | SINE | Alu | AluSx1 |
CAediting_1064481 | chr15_78624506_- | SINE | Alu | AluSx1 |
CAediting_1064482 | chr15_78624508_- | SINE | Alu | AluSx1 |
CAediting_1064483 | chr15_78624511_- | SINE | Alu | AluSx1 |
CAediting_1064484 | chr15_78624514_- | SINE | Alu | AluSx1 |
CAediting_1064485 | chr15_78624520_- | SINE | Alu | AluSx1 |
CAediting_1064486 | chr15_78624521_- | SINE | Alu | AluSx1 |
CAediting_1064487 | chr15_78624539_- | SINE | Alu | AluSx1 |
CAediting_1064488 | chr15_78624546_- | SINE | Alu | AluSx1 |
CAediting_1064489 | chr15_78624547_- | SINE | Alu | AluSx1 |
CAediting_1064490 | chr15_78624548_- | SINE | Alu | AluSx1 |
CAediting_1064491 | chr15_78624561_- | SINE | Alu | AluSx1 |
CAediting_1064492 | chr15_78624567_- | SINE | Alu | AluSx1 |
CAediting_1064493 | chr15_78624573_- | SINE | Alu | AluSx1 |
CAediting_1064494 | chr15_78624594_- | SINE | Alu | AluSx1 |
CAediting_1064495 | chr15_78624595_- | SINE | Alu | AluSx1 |
CAediting_1064496 | chr15_78624599_- | SINE | Alu | AluSx1 |
CAediting_1064497 | chr15_78624608_- | SINE | Alu | AluSx1 |
CAediting_1064498 | chr15_78624621_- | SINE | Alu | AluSx1 |
CAediting_1064499 | chr15_78624631_- | SINE | Alu | AluSx1 |
CAediting_1064500 | chr15_78624635_- | SINE | Alu | AluSx1 |
CAediting_1064501 | chr15_78624642_- | SINE | Alu | AluSx1 |
CAediting_1064502 | chr15_78624643_- | SINE | Alu | AluSx1 |
CAediting_1064503 | chr15_78624660_- | SINE | Alu | AluSx1 |
CAediting_1064504 | chr15_78624661_- | SINE | Alu | AluSx1 |
CAediting_1064505 | chr15_78643317_- | SINE | Alu | AluJb |
CAediting_1064506 | chr15_78643322_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for CHRNB4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHRNB4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CHRNB4 |
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The effects of the RNA editing to the miRNA binding sites for CHRNB4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1064480 | chr15_78624505_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1228-3p | 78624499 | 78624506 | 8mer-1a | 78624499 | 78624522 | 148.00 | -20.70 |
CAediting_1064484 | chr15_78624514_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-383-3p | 78624514 | 78624520 | 7mer-m8 | 78624513 | 78624531 | 140.00 | -16.50 |
CAediting_1064484 | chr15_78624514_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-7977 | 78624511 | 78624517 | 7mer-m8 | 78624510 | 78624527 | 140.00 | -13.07 |
CAediting_1064490 | chr15_78624548_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1298-5p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624562 | 148.00 | -16.14 |
CAediting_1064497 | chr15_78624608_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3960 | 78624607 | 78624613 | 7mer-m8 | 78624606 | 78624625 | 145.00 | -23.08 |
CAediting_1064497 | chr15_78624608_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-8072 | 78624607 | 78624613 | 7mer-m8 | 78624606 | 78624625 | 140.00 | -22.63 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6771-5p | 78624634 | 78624640 | 7mer-m8 | 78624633 | 78624652 | 157.00 | -34.24 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-128-3p | 78624490 | 78624496 | 7mer-m8 | 78624489 | 78624509 | 141.00 | -12.60 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-128-3p | 78624490 | 78624496 | 7mer-m8 | 78624489 | 78624509 | 141.00 | -12.60 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-216a-3p | 78624490 | 78624496 | 7mer-m8 | 78624489 | 78624509 | 151.00 | -17.73 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3622a-5p | 78624487 | 78624492 | 6mer | 78624486 | 78624507 | 148.00 | -28.35 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3681-3p | 78624490 | 78624496 | 7mer-m8 | 78624489 | 78624508 | 160.00 | -19.73 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-5582-5p | 78624487 | 78624493 | 7mer-m8 | 78624486 | 78624511 | 151.00 | -15.16 |
CAediting_1064478 | chr15_78624492_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-5693 | 78624492 | 78624498 | 7mer-m8 | 78624491 | 78624512 | 155.00 | -19.14 |
CAediting_1064479 | chr15_78624499_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-663b | 78624494 | 78624500 | 7mer-m8 | 78624493 | 78624514 | 147.00 | -20.07 |
CAediting_1064481 | chr15_78624506_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4636 | 78624503 | 78624508 | 6mer | 78624502 | 78624524 | 151.00 | -19.60 |
CAediting_1064482 | chr15_78624508_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-106a-3p | 78624505 | 78624511 | 7mer-1a | 78624505 | 78624526 | 141.00 | -16.54 |
CAediting_1064483 | chr15_78624511_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-652-5p | 78624508 | 78624515 | 8mer-1a | 78624508 | 78624532 | 147.00 | -21.24 |
CAediting_1064485 | chr15_78624520_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3189-3p | 78624519 | 78624525 | 7mer-m8 | 78624518 | 78624541 | 149.00 | -26.69 |
CAediting_1064485 | chr15_78624520_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6813-3p | 78624518 | 78624524 | 7mer-m8 | 78624517 | 78624537 | 140.00 | -12.15 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-326 | 78624519 | 78624525 | 7mer-m8 | 78624518 | 78624537 | 140.00 | -14.60 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-330-5p | 78624519 | 78624525 | 7mer-m8 | 78624518 | 78624539 | 140.00 | -21.93 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4314 | 78624520 | 78624526 | 7mer-m8 | 78624519 | 78624536 | 140.00 | -21.61 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-514a-5p | 78624518 | 78624524 | 7mer-m8 | 78624517 | 78624540 | 146.00 | -18.62 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-514a-5p | 78624518 | 78624524 | 7mer-m8 | 78624517 | 78624540 | 146.00 | -18.62 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-514a-5p | 78624518 | 78624524 | 7mer-m8 | 78624517 | 78624540 | 146.00 | -18.62 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3621 | 78624538 | 78624544 | 7mer-m8 | 78624537 | 78624560 | 149.00 | -25.06 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3937 | 78624535 | 78624541 | 7mer-m8 | 78624534 | 78624556 | 142.00 | -22.62 |
CAediting_1064489 | chr15_78624547_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-12119 | 78624546 | 78624552 | 7mer-m8 | 78624545 | 78624566 | 150.00 | -21.48 |
CAediting_1064489 | chr15_78624547_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3200-5p | 78624545 | 78624551 | 7mer-m8 | 78624544 | 78624567 | 143.00 | -14.09 |
CAediting_1064489 | chr15_78624547_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-7162-3p | 78624546 | 78624553 | 8mer-1a | 78624546 | 78624566 | 142.00 | -17.81 |
CAediting_1064491 | chr15_78624561_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1289 | 78624556 | 78624562 | 7mer-m8 | 78624555 | 78624576 | 166.00 | -24.71 |
CAediting_1064491 | chr15_78624561_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1289 | 78624556 | 78624562 | 7mer-m8 | 78624555 | 78624576 | 166.00 | -24.71 |
CAediting_1064492 | chr15_78624567_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6849-3p | 78624567 | 78624573 | 7mer-m8 | 78624566 | 78624586 | 154.00 | -22.23 |
CAediting_1064493 | chr15_78624573_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3940-3p | 78624569 | 78624575 | 7mer-m8 | 78624568 | 78624586 | 144.00 | -24.53 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4661-5p | 78624593 | 78624599 | 7mer-m8 | 78624592 | 78624613 | 141.00 | -15.11 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548ae-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624608 | 141.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548ae-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624608 | 141.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548ah-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624610 | 143.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548aj-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624608 | 141.00 | -8.37 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548aj-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624608 | 141.00 | -8.37 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548am-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624610 | 143.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548aq-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624609 | 141.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548j-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624608 | 141.00 | -10.48 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548x-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624607 | 141.00 | -8.37 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-548x-3p | 78624589 | 78624595 | 7mer-m8 | 78624588 | 78624607 | 141.00 | -8.37 |
CAediting_1064494 | chr15_78624594_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-7844-5p | 78624591 | 78624597 | 7mer-m8 | 78624590 | 78624611 | 156.00 | -18.72 |
CAediting_1064495 | chr15_78624595_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1207-3p | 78624594 | 78624601 | 8mer-1a | 78624594 | 78624611 | 142.00 | -14.68 |
CAediting_1064495 | chr15_78624595_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-34a-3p | 78624592 | 78624598 | 7mer-m8 | 78624591 | 78624613 | 143.00 | -9.86 |
CAediting_1064498 | chr15_78624621_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-544a | 78624615 | 78624622 | 8mer-1a | 78624615 | 78624636 | 164.00 | -16.65 |
CAediting_1064499 | chr15_78624631_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3614-5p | 78624631 | 78624637 | 7mer-m8 | 78624630 | 78624653 | 151.00 | -21.62 |
CAediting_1064499 | chr15_78624631_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4691-3p | 78624627 | 78624633 | 7mer-m8 | 78624626 | 78624645 | 142.00 | -22.06 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3929 | 78624639 | 78624645 | 7mer-m8 | 78624638 | 78624659 | 156.00 | -20.51 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4478 | 78624639 | 78624645 | 7mer-m8 | 78624638 | 78624653 | 149.00 | -25.05 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4649-3p | 78624642 | 78624648 | 7mer-m8 | 78624641 | 78624661 | 140.00 | -14.11 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-485-5p | 78624638 | 78624644 | 7mer-m8 | 78624637 | 78624658 | 157.00 | -19.65 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6884-5p | 78624638 | 78624644 | 7mer-m8 | 78624637 | 78624659 | 160.00 | -22.89 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-7160-5p | 78624641 | 78624647 | 7mer-m8 | 78624640 | 78624660 | 146.00 | -17.63 |
CAediting_1064503 | chr15_78624660_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1199-5p | 78624660 | 78624666 | 7mer-m8 | 78624659 | 78624678 | 157.00 | -26.33 |
CAediting_1064503 | chr15_78624660_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3622a-3p | 78624656 | 78624663 | 8mer-1a | 78624656 | 78624678 | 146.00 | -19.80 |
CAediting_1064503 | chr15_78624660_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3622b-3p | 78624656 | 78624663 | 8mer-1a | 78624656 | 78624676 | 153.00 | -23.14 |
CAediting_1064503 | chr15_78624660_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6751-3p | 78624660 | 78624666 | 7mer-m8 | 78624659 | 78624679 | 145.00 | -13.99 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-12126 | 78624631 | 78624638 | 8mer-1a | 78624631 | 78624654 | 141 | -12.92 |
CAediting_1064496 | chr15_78624599_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1285-3p | 78624598 | 78624604 | 7mer-m8 | 78624597 | 78624618 | 140 | -16.64 |
CAediting_1064496 | chr15_78624599_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1285-3p | 78624598 | 78624604 | 7mer-m8 | 78624597 | 78624618 | 140 | -16.64 |
CAediting_1064501 | chr15_78624642_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1304-5p | 78624642 | 78624648 | 7mer-m8 | 78624641 | 78624658 | 144 | -14.37 |
CAediting_1064502 | chr15_78624643_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-1304-5p | 78624642 | 78624648 | 7mer-m8 | 78624641 | 78624658 | 144 | -14.37 |
CAediting_1064480 | chr15_78624505_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-216b-3p | 78624499 | 78624506 | 8mer-1a | 78624499 | 78624524 | 148 | -12.76 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-30b-3p | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624655 | 155 | -16.17 |
CAediting_1064493 | chr15_78624573_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3190-5p | 78624572 | 78624578 | 7mer-m8 | 78624571 | 78624590 | 148 | -18.84 |
CAediting_1064479 | chr15_78624499_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-342-3p | 78624498 | 78624504 | 7mer-m8 | 78624497 | 78624523 | 153 | -16.78 |
CAediting_1064492 | chr15_78624567_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-34a-3p | 78624565 | 78624571 | 7mer-m8 | 78624564 | 78624585 | 140 | -10.79 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3665 | 78624534 | 78624540 | 7mer-m8 | 78624533 | 78624550 | 142 | -18.03 |
CAediting_1064498 | chr15_78624621_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3686 | 78624616 | 78624623 | 8mer-1a | 78624616 | 78624637 | 140 | -9.32 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3689a-3p | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624654 | 151 | -18.99 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3689b-3p | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624654 | 151 | -17.82 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-3689c | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624654 | 151 | -17.82 |
CAediting_1064479 | chr15_78624499_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4284 | 78624495 | 78624502 | 8mer-1a | 78624495 | 78624512 | 146 | -15.85 |
CAediting_1064499 | chr15_78624631_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-5690 | 78624627 | 78624633 | 7mer-m8 | 78624626 | 78624646 | 145 | -16.74 |
CAediting_1064488 | chr15_78624546_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-579-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624564 | 142 | -8.97 |
CAediting_1064489 | chr15_78624547_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-579-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624564 | 142 | -8.97 |
CAediting_1064490 | chr15_78624548_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-579-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624564 | 142 | -8.97 |
CAediting_1064496 | chr15_78624599_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-612 | 78624598 | 78624604 | 7mer-m8 | 78624597 | 78624628 | 152 | -29.95 |
CAediting_1064480 | chr15_78624505_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6500-3p | 78624502 | 78624508 | 7mer-m8 | 78624501 | 78624521 | 140 | -13.55 |
CAediting_1064481 | chr15_78624506_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6500-3p | 78624502 | 78624508 | 7mer-m8 | 78624501 | 78624521 | 140 | -13.55 |
CAediting_1064488 | chr15_78624546_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-664b-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624563 | 140 | -8.06 |
CAediting_1064489 | chr15_78624547_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-664b-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624563 | 140 | -8.06 |
CAediting_1064490 | chr15_78624548_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-664b-3p | 78624543 | 78624549 | 7mer-m8 | 78624542 | 78624563 | 140 | -8.06 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6769a-5p | 78624537 | 78624543 | 7mer-m8 | 78624536 | 78624558 | 149 | -23.73 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6769b-5p | 78624537 | 78624543 | 7mer-m8 | 78624536 | 78624562 | 151 | -25.97 |
CAediting_1064497 | chr15_78624608_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6770-3p | 78624608 | 78624614 | 7mer-m8 | 78624607 | 78624627 | 151 | -19.71 |
CAediting_1064497 | chr15_78624608_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6770-3p | 78624608 | 78624614 | 7mer-m8 | 78624607 | 78624627 | 151 | -19.71 |
CAediting_1064497 | chr15_78624608_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6770-3p | 78624608 | 78624614 | 7mer-m8 | 78624607 | 78624627 | 151 | -19.71 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6779-5p | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624658 | 142 | -20.78 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6780a-5p | 78624634 | 78624641 | 8mer-1a | 78624634 | 78624657 | 152 | -26.46 |
CAediting_1064487 | chr15_78624539_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-6793-5p | 78624538 | 78624543 | 6mer | 78624537 | 78624555 | 140 | -19.58 |
CAediting_1064500 | chr15_78624635_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-887-5p | 78624634 | 78624640 | 7mer-m8 | 78624633 | 78624653 | 140 | -16.64 |
CAediting_1064486 | chr15_78624521_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-887-5p | 78624520 | 78624527 | 8mer-1a | 78624520 | 78624541 | 148 | -16.01 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000117971.10 | ENST00000412074 | hsa-miR-320e | 78624736 | 78624743 | 8mer-1a | 78624736 | 78624751 | 153 | -18.82 |
CAediting_77128 | chr1_85133844_+ | ENSG00000117971.10 | ENST00000412074 | hsa-miR-4423-3p | 78624599 | 78624605 | 7mer-m8 | 78624598 | 78624618 | 140 | -12.65 |
CAediting_604450 | chr7_133034877_- | ENSG00000117971.10 | ENST00000559849 | hsa-miR-3654 | 78634666 | 78634672 | 7mer-m8 | 78634665 | 78634684 | 151 | -21.88 |
CAediting_396018 | chr5_1062918_- | ENSG00000117971.10 | ENST00000559849 | hsa-miR-4635 | 78629795 | 78629801 | 7mer-m8 | 78629794 | 78629816 | 142 | -15.33 |
CAediting_442554 | chr5_154685830_+ | ENSG00000117971.10 | ENST00000559849 | hsa-miR-1303 | 78629457 | 78629463 | 7mer-m8 | 78629456 | 78629477 | 148 | -15.77 |
CAediting_468389 | chr6_31355314_- | ENSG00000117971.10 | ENST00000559849 | hsa-miR-6891-5p | 78634629 | 78634635 | 7mer-m8 | 78634628 | 78634646 | 145 | -17.66 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1524209 | chrX_134546392_- | ENSG00000117971.10 | ENST00000559849 | hsa-miR-503-5p | 78629466 | 78629471 | 6mer | 78629465 | 78629488 | 155 | -23.75 |
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The effects of the RNA editing to the stability of the RNA structures for CHRNB4 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CHRNB4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
PCPG | CAediting_1064480 | chr15_78624505_- | 3.60856541884555e-05 | 0.36913945419647 | 0.020095493911899 | 0.212890301423516 | . | . |
PCPG | CAediting_1064484 | chr15_78624514_- | 0.00079687977787308 | 0.300922318924989 | 0.00616888771716445 | 0.247649627831372 | . | . |
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Relation with cancer stages for CHRNB4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CHRNB4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
OV | CAediting_1064484 | chr15_78624514_- | 0.0147117893496463 | 0.0045803 | 108.909 |
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RelatedDrugs for CHRNB4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
CHRNB4 | P30926 | DB00184 | Nicotine | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved |
CHRNB4 | P30926 | DB00514 | Dextromethorphan | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved |
CHRNB4 | P30926 | DB00898 | Ethanol | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved |
CHRNB4 | P30926 | DB01090 | Pentolinium | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved |
CHRNB4 | P30926 | DB00237 | Butabarbital | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved|illicit |
CHRNB4 | P30926 | DB01227 | Levacetylmethadol | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved|investigational |
CHRNB4 | P30926 | DB00472 | Fluoxetine | Neuronal acetylcholine receptor subunit beta-4 | SmallMoleculeDrug | approved|vet_approved |
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RelatedDiseases for CHRNB4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CHRNB4 | C0001973 | Alcoholic Intoxication, Chronic | 3 | PSYGENET |
CHRNB4 | C0022333 | Jacksonian Seizure | 2 | CTD_human |
CHRNB4 | C0036572 | Seizures | 2 | CTD_human |
CHRNB4 | C0149958 | Complex partial seizures | 2 | CTD_human |
CHRNB4 | C0234533 | Generalized seizures | 2 | CTD_human |
CHRNB4 | C0234535 | Clonic Seizures | 2 | CTD_human |
CHRNB4 | C0270824 | Visual seizure | 2 | CTD_human |
CHRNB4 | C0270844 | Tonic Seizures | 2 | CTD_human |
CHRNB4 | C0270846 | Epileptic drop attack | 2 | CTD_human |
CHRNB4 | C0422850 | Seizures, Somatosensory | 2 | CTD_human |
CHRNB4 | C0422852 | Seizures, Auditory | 2 | CTD_human |
CHRNB4 | C0422853 | Olfactory seizure | 2 | CTD_human |
CHRNB4 | C0422854 | Gustatory seizure | 2 | CTD_human |
CHRNB4 | C0422855 | Vertiginous seizure | 2 | CTD_human |
CHRNB4 | C0494475 | Tonic - clonic seizures | 2 | CTD_human |
CHRNB4 | C0600427 | Cocaine Dependence | 2 | PSYGENET |
CHRNB4 | C0751056 | Non-epileptic convulsion | 2 | CTD_human |
CHRNB4 | C0751110 | Single Seizure | 2 | CTD_human |
CHRNB4 | C0751123 | Atonic Absence Seizures | 2 | CTD_human |
CHRNB4 | C0751494 | Convulsive Seizures | 2 | CTD_human |
CHRNB4 | C0751495 | Seizures, Focal | 2 | CTD_human |
CHRNB4 | C0751496 | Seizures, Sensory | 2 | CTD_human |
CHRNB4 | C3495874 | Nonepileptic Seizures | 2 | CTD_human |
CHRNB4 | C4048158 | Convulsions | 2 | CTD_human |
CHRNB4 | C4316903 | Absence Seizures | 2 | CTD_human |
CHRNB4 | C4317109 | Epileptic Seizures | 2 | CTD_human |
CHRNB4 | C4317123 | Myoclonic Seizures | 2 | CTD_human |
CHRNB4 | C4505436 | Generalized Absence Seizures | 2 | CTD_human |
CHRNB4 | C0024121 | Lung Neoplasms | 1 | CTD_human |
CHRNB4 | C0038587 | Substance Withdrawal Syndrome | 1 | CTD_human |
CHRNB4 | C0086189 | Drug Withdrawal Symptoms | 1 | CTD_human |
CHRNB4 | C0087169 | Withdrawal Symptoms | 1 | CTD_human |
CHRNB4 | C0242379 | Malignant neoplasm of lung | 1 | CTD_human |