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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RPLP0P2 (CAeditome ID:113157)

Gene summary for RPLP0P2

check button Gene summary
Gene informationGene symbol

RPLP0P2

Gene ID

113157

Gene nameribosomal protein lateral stalk subunit P0 pseudogene 2
SynonymsRPLP0L2|RPLP0_3_1146
Cytomap

11q12.2

Type of genepseudo
Descriptionribosomal protein P0 pseudogene 2ribosomal protein, large, P0 pseudogene 2
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RPLP0P2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000243742.4

check button RNA A-to-I editing events in Cancer.
CAediting_817590(61621719, +), CAediting_817591(61623463, +), CAediting_817592(61623553, +), CAediting_817593(61624713, +), CAediting_817594(61631305, +), CAediting_817595(61633429, +), CAediting_817596(61633474, +), CAediting_817597(61633913, +), CAediting_817598(61633988, +), CAediting_817599(61634059, +), CAediting_817600(61634431, +), CAediting_817601(61634973, +), CAediting_817602(61635155, +), CAediting_817603(61637864, +), CAediting_817604(61637872, +), CAediting_817605(61637873, +), CAediting_817606(61637878, +), CAediting_817607(61637911, +), CAediting_817608(61637916, +), CAediting_817609(61637948, +), CAediting_817610(61637949, +), CAediting_817611(61637950, +), CAediting_817612(61637955, +), CAediting_817613(61637964, +), CAediting_817614(61637968, +), CAediting_817615(61637970, +), CAediting_817616(61637973, +), CAediting_817617(61637976, +), CAediting_817618(61637977, +), CAediting_817619(61637980, +), CAediting_817620(61638006, +), CAediting_817621(61638012, +), CAediting_817622(61638023, +), CAediting_817623(61638029, +), CAediting_817624(61638033, +), CAediting_817625(61638036, +), CAediting_817626(61638039, +), CAediting_817627(61638047, +), CAediting_817628(61638048, +), CAediting_817629(61638052, +), CAediting_817630(61638068, +), CAediting_817631(61638072, +), CAediting_817632(61638077, +), CAediting_817633(61638733, +), CAediting_817634(61638737, +), CAediting_817635(61638740, +), CAediting_817636(61638745, +), CAediting_817637(61638762, +), CAediting_817638(61638767, +), CAediting_817639(61638773, +), CAediting_817640(61638775, +), CAediting_817641(61638776, +), CAediting_817642(61638781, +), CAediting_817643(61638791, +), CAediting_817644(61638804, +), CAediting_817645(61638806, +), CAediting_817646(61638811, +), CAediting_817647(61638812, +), CAediting_817648(61638841, +), CAediting_817649(61638851, +), CAediting_817650(61638855, +), CAediting_817651(61638867, +), CAediting_817652(61638877, +), CAediting_817653(61638892, +), CAediting_817654(61638895, +), CAediting_817655(61638912, +), CAediting_817656(61638921, +), CAediting_817657(61638932, +), CAediting_817658(61638933, +), CAediting_817659(61638934, +), CAediting_817660(61638951, +), CAediting_817661(61638955, +), CAediting_817662(61638972, +), CAediting_817663(61638973, +), CAediting_817664(61638974, +), CAediting_817665(61638986, +), CAediting_817666(61638988, +), CAediting_817667(61638995, +), CAediting_817668(61639004, +), CAediting_817669(61639334, +), CAediting_817670(61639335, +), CAediting_817671(61639340, +), CAediting_817672(61639350, +), CAediting_817673(61639356, +), CAediting_817674(61639357, +), CAediting_817675(61639362, +), CAediting_817676(61639365, +), CAediting_817677(61639378, +), CAediting_817678(61639379, +), CAediting_817679(61639402, +), CAediting_817680(61639410, +), CAediting_817681(61639411, +), CAediting_817682(61639413, +), CAediting_817683(61639416, +), CAediting_817684(61639426, +), CAediting_817685(61639428, +), CAediting_817686(61639430, +), CAediting_817687(61639448, +),

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RNA editing positional annotations for RPLP0P2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_817590chr11_61621719_+ncRNA_intronic
CAediting_817591chr11_61623463_+ncRNA_intronic
CAediting_817592chr11_61623553_+ncRNA_intronic
CAediting_817593chr11_61624713_+ncRNA_intronic
CAediting_817594chr11_61631305_+ncRNA_intronic
CAediting_817595chr11_61633429_+ncRNA_intronic
CAediting_817596chr11_61633474_+ncRNA_intronic
CAediting_817597chr11_61633913_+ncRNA_intronic
CAediting_817598chr11_61633988_+ncRNA_intronic
CAediting_817599chr11_61634059_+ncRNA_intronic
CAediting_817600chr11_61634431_+ncRNA_intronic
CAediting_817601chr11_61634973_+ncRNA_intronic
CAediting_817602chr11_61635155_+ncRNA_intronic
CAediting_817603chr11_61637864_+ncRNA_exonic
CAediting_817604chr11_61637872_+ncRNA_exonic
CAediting_817605chr11_61637873_+ncRNA_exonic
CAediting_817606chr11_61637878_+ncRNA_exonic
CAediting_817607chr11_61637911_+ncRNA_exonic
CAediting_817608chr11_61637916_+ncRNA_exonic
CAediting_817609chr11_61637948_+ncRNA_exonic
CAediting_817610chr11_61637949_+ncRNA_exonic
CAediting_817611chr11_61637950_+ncRNA_exonic
CAediting_817612chr11_61637955_+ncRNA_exonic
CAediting_817613chr11_61637964_+ncRNA_exonic
CAediting_817614chr11_61637968_+ncRNA_exonic
CAediting_817615chr11_61637970_+ncRNA_exonic
CAediting_817616chr11_61637973_+ncRNA_exonic
CAediting_817617chr11_61637976_+ncRNA_exonic
CAediting_817618chr11_61637977_+ncRNA_exonic
CAediting_817619chr11_61637980_+ncRNA_exonic
CAediting_817620chr11_61638006_+ncRNA_exonic
CAediting_817621chr11_61638012_+ncRNA_exonic
CAediting_817622chr11_61638023_+ncRNA_exonic
CAediting_817623chr11_61638029_+ncRNA_exonic
CAediting_817624chr11_61638033_+ncRNA_exonic
CAediting_817625chr11_61638036_+ncRNA_exonic
CAediting_817626chr11_61638039_+ncRNA_exonic
CAediting_817627chr11_61638047_+ncRNA_exonic
CAediting_817628chr11_61638048_+ncRNA_exonic
CAediting_817629chr11_61638052_+ncRNA_exonic
CAediting_817630chr11_61638068_+ncRNA_exonic
CAediting_817631chr11_61638072_+ncRNA_exonic
CAediting_817632chr11_61638077_+ncRNA_exonic
CAediting_817633chr11_61638733_+ncRNA_exonic
CAediting_817634chr11_61638737_+ncRNA_exonic
CAediting_817635chr11_61638740_+ncRNA_exonic
CAediting_817636chr11_61638745_+ncRNA_exonic
CAediting_817637chr11_61638762_+ncRNA_exonic
CAediting_817638chr11_61638767_+ncRNA_exonic
CAediting_817639chr11_61638773_+ncRNA_exonic
CAediting_817640chr11_61638775_+ncRNA_exonic
CAediting_817641chr11_61638776_+ncRNA_exonic
CAediting_817642chr11_61638781_+ncRNA_exonic
CAediting_817643chr11_61638791_+ncRNA_exonic
CAediting_817644chr11_61638804_+ncRNA_exonic
CAediting_817645chr11_61638806_+ncRNA_exonic
CAediting_817646chr11_61638811_+ncRNA_exonic
CAediting_817647chr11_61638812_+ncRNA_exonic
CAediting_817648chr11_61638841_+ncRNA_exonic
CAediting_817649chr11_61638851_+ncRNA_exonic
CAediting_817650chr11_61638855_+ncRNA_exonic
CAediting_817651chr11_61638867_+ncRNA_exonic
CAediting_817652chr11_61638877_+ncRNA_exonic
CAediting_817653chr11_61638892_+ncRNA_exonic
CAediting_817654chr11_61638895_+ncRNA_exonic
CAediting_817655chr11_61638912_+ncRNA_exonic
CAediting_817656chr11_61638921_+ncRNA_exonic
CAediting_817657chr11_61638932_+ncRNA_exonic
CAediting_817658chr11_61638933_+ncRNA_exonic
CAediting_817659chr11_61638934_+ncRNA_exonic
CAediting_817660chr11_61638951_+ncRNA_exonic
CAediting_817661chr11_61638955_+ncRNA_exonic
CAediting_817662chr11_61638972_+ncRNA_exonic
CAediting_817663chr11_61638973_+ncRNA_exonic
CAediting_817664chr11_61638974_+ncRNA_exonic
CAediting_817665chr11_61638986_+ncRNA_exonic
CAediting_817666chr11_61638988_+ncRNA_exonic
CAediting_817667chr11_61638995_+ncRNA_exonic
CAediting_817668chr11_61639004_+ncRNA_exonic
CAediting_817669chr11_61639334_+ncRNA_exonic
CAediting_817670chr11_61639335_+ncRNA_exonic
CAediting_817671chr11_61639340_+ncRNA_exonic
CAediting_817672chr11_61639350_+ncRNA_exonic
CAediting_817673chr11_61639356_+ncRNA_exonic
CAediting_817674chr11_61639357_+ncRNA_exonic
CAediting_817675chr11_61639362_+ncRNA_exonic
CAediting_817676chr11_61639365_+ncRNA_exonic
CAediting_817677chr11_61639378_+ncRNA_exonic
CAediting_817678chr11_61639379_+ncRNA_exonic
CAediting_817679chr11_61639402_+ncRNA_exonic
CAediting_817680chr11_61639410_+ncRNA_exonic
CAediting_817681chr11_61639411_+ncRNA_exonic
CAediting_817682chr11_61639413_+ncRNA_exonic
CAediting_817683chr11_61639416_+ncRNA_exonic
CAediting_817684chr11_61639426_+ncRNA_exonic
CAediting_817685chr11_61639428_+ncRNA_exonic
CAediting_817686chr11_61639430_+ncRNA_exonic
CAediting_817687chr11_61639448_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_817590chr11_61621719_+SINEAluAluSx1
CAediting_817591chr11_61623463_+SINEAluAluSx
CAediting_817592chr11_61623553_+SINEAluAluSx
CAediting_817593chr11_61624713_+SINEAluAluSz
CAediting_817594chr11_61631305_+SINEAluAluSx
CAediting_817595chr11_61633429_+SINEAluAluSp
CAediting_817596chr11_61633474_+SINEAluAluSp
CAediting_817597chr11_61633913_+SINEAluAluJb
CAediting_817598chr11_61633988_+SINEAluAluJb
CAediting_817599chr11_61634059_+SINEAluAluJb
CAediting_817600chr11_61634431_+SINEAluAluSx4
CAediting_817601chr11_61634973_+SINEAluAluSx1
CAediting_817602chr11_61635155_+SINEAluAluSx1
CAediting_817603chr11_61637864_+SINEAluAluY
CAediting_817604chr11_61637872_+SINEAluAluY
CAediting_817605chr11_61637873_+SINEAluAluY
CAediting_817606chr11_61637878_+SINEAluAluY
CAediting_817607chr11_61637911_+SINEAluAluY
CAediting_817608chr11_61637916_+SINEAluAluY
CAediting_817609chr11_61637948_+SINEAluAluY
CAediting_817610chr11_61637949_+SINEAluAluY
CAediting_817611chr11_61637950_+SINEAluAluY
CAediting_817612chr11_61637955_+SINEAluAluY
CAediting_817613chr11_61637964_+SINEAluAluY
CAediting_817614chr11_61637968_+SINEAluAluY
CAediting_817615chr11_61637970_+SINEAluAluY
CAediting_817616chr11_61637973_+SINEAluAluY
CAediting_817617chr11_61637976_+SINEAluAluY
CAediting_817618chr11_61637977_+SINEAluAluY
CAediting_817619chr11_61637980_+SINEAluAluY
CAediting_817620chr11_61638006_+SINEAluAluY
CAediting_817621chr11_61638012_+SINEAluAluY
CAediting_817622chr11_61638023_+SINEAluAluY
CAediting_817623chr11_61638029_+SINEAluAluY
CAediting_817624chr11_61638033_+SINEAluAluY
CAediting_817625chr11_61638036_+SINEAluAluY
CAediting_817626chr11_61638039_+SINEAluAluY
CAediting_817627chr11_61638047_+SINEAluAluY
CAediting_817628chr11_61638048_+SINEAluAluY
CAediting_817629chr11_61638052_+SINEAluAluY
CAediting_817630chr11_61638068_+SINEAluAluY
CAediting_817631chr11_61638072_+SINEAluAluY
CAediting_817632chr11_61638077_+SINEAluAluY
CAediting_817633chr11_61638733_+SINEAluAluSz6
CAediting_817634chr11_61638737_+SINEAluAluSz6
CAediting_817635chr11_61638740_+SINEAluAluSz6
CAediting_817636chr11_61638745_+SINEAluAluSz6
CAediting_817637chr11_61638762_+SINEAluAluSz6
CAediting_817638chr11_61638767_+SINEAluAluSz6
CAediting_817639chr11_61638773_+SINEAluAluSz6
CAediting_817640chr11_61638775_+SINEAluAluSz6
CAediting_817641chr11_61638776_+SINEAluAluSz6
CAediting_817642chr11_61638781_+SINEAluAluSz6
CAediting_817643chr11_61638791_+SINEAluAluSz6
CAediting_817644chr11_61638804_+SINEAluAluSz6
CAediting_817645chr11_61638806_+SINEAluAluSz6
CAediting_817646chr11_61638811_+SINEAluAluSz6
CAediting_817647chr11_61638812_+SINEAluAluSz6
CAediting_817648chr11_61638841_+SINEAluAluSz6
CAediting_817649chr11_61638851_+SINEAluAluSz6
CAediting_817650chr11_61638855_+SINEAluAluSz6
CAediting_817651chr11_61638867_+SINEAluAluSz6
CAediting_817652chr11_61638877_+SINEAluAluSz6
CAediting_817653chr11_61638892_+SINEAluAluSz6
CAediting_817654chr11_61638895_+SINEAluAluSz6
CAediting_817655chr11_61638912_+SINEAluAluSz6
CAediting_817656chr11_61638921_+SINEAluAluSz6
CAediting_817657chr11_61638932_+SINEAluAluSz6
CAediting_817658chr11_61638933_+SINEAluAluSz6
CAediting_817659chr11_61638934_+SINEAluAluSz6
CAediting_817660chr11_61638951_+SINEAluAluSz6
CAediting_817661chr11_61638955_+SINEAluAluSz6
CAediting_817662chr11_61638972_+SINEAluAluSz6
CAediting_817663chr11_61638973_+SINEAluAluSz6
CAediting_817664chr11_61638974_+SINEAluAluSz6
CAediting_817665chr11_61638986_+SINEAluAluSz6
CAediting_817666chr11_61638988_+SINEAluAluSz6
CAediting_817667chr11_61638995_+SINEAluAluSz6
CAediting_817668chr11_61639004_+SINEAluAluSz6
CAediting_817669chr11_61639334_+SINEAluAluJr
CAediting_817670chr11_61639335_+SINEAluAluJr
CAediting_817671chr11_61639340_+SINEAluAluJr
CAediting_817672chr11_61639350_+SINEAluAluJr
CAediting_817673chr11_61639356_+SINEAluAluJr
CAediting_817674chr11_61639357_+SINEAluAluJr
CAediting_817675chr11_61639362_+SINEAluAluJr
CAediting_817676chr11_61639365_+SINEAluAluJr
CAediting_817677chr11_61639378_+SINEAluAluJr
CAediting_817678chr11_61639379_+SINEAluAluJr
CAediting_817679chr11_61639402_+SINEAluAluJr
CAediting_817680chr11_61639410_+SINEAluAluJr
CAediting_817681chr11_61639411_+SINEAluAluJr
CAediting_817682chr11_61639413_+SINEAluAluJr
CAediting_817683chr11_61639416_+SINEAluAluJr
CAediting_817684chr11_61639426_+SINEAluAluJr
CAediting_817685chr11_61639428_+SINEAluAluJr
CAediting_817686chr11_61639430_+SINEAluAluJr
CAediting_817687chr11_61639448_+SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for RPLP0P2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000243742.4.RPLP0P2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000243742.4.RPLP0P2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPLP0P2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RPLP0P2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RPLP0P2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RPLP0P2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RPLP0P2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_817620chr11_61638006_+0.0259053054988480.2643411457716990.02247942785240690.270572815225984..
BRCACAediting_817671chr11_61639340_+0.006068009796007030.285589070450183....
LUADCAediting_817671chr11_61639340_+0.003084326860961110.395398346862496....
PRADCAediting_817671chr11_61639340_+..0.01447658975024420.279503043150482..
OVCAediting_817671chr11_61639340_+0.002088592504660370.356890218089884....
SARCCAediting_817671chr11_61639340_+0.0005381519927029590.472061142967427....
BRCACAediting_817673chr11_61639356_+0.0009403787634081680.300630349919325....
LUSCCAediting_817673chr11_61639356_+....0.03144411882296860.265126549369934
BRCACAediting_817674chr11_61639357_+0.003140565034667150.268600297304094....
LUSCCAediting_817674chr11_61639357_+0.02224597284352290.283223227905265..0.001740604047103590.38101421695302
SARCCAediting_817674chr11_61639357_+0.001319228817742110.402040412458168....
BRCACAediting_817680chr11_61639410_+0.000307179284679130.323931393975838....
STADCAediting_817680chr11_61639410_+0.01090335169212510.343848375055473....

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Relation with cancer stages for RPLP0P2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCAclinical_stageCAediting_817671chr11_61639340_+0.0380145876298548-0.455434386176854
ESCAclinical_stageCAediting_817680chr11_61639410_+0.02331654966466520.481371847139875
ESCAclinical_stageCAediting_817686chr11_61639430_+0.03233466362900720.457384923803794
OVclinical_stageCAediting_817671chr11_61639340_+0.01291050468101910.293734526444644

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Relation with survival for RPLP0P2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
STADCAediting_817673chr11_61639356_+0.03104242750594030.0117683153.823

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RelatedDrugs for RPLP0P2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RPLP0P2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource