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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: DUSP12 (CAeditome ID:11266) |
Gene summary for DUSP12 |
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Gene information | Gene symbol | DUSP12 | Gene ID | 11266 |
Gene name | dual specificity phosphatase 12 | |
Synonyms | DUSP1|YVH1 | |
Cytomap | 1q23.3 | |
Type of gene | protein-coding | |
Description | dual specificity protein phosphatase 12YVH1 protein-tyrosine phosphatase orthologdual specificity tyrosine phosphatase YVH1serine/threonine specific protein phosphatase | |
Modification date | 20210518 | |
UniProtAcc | Q9UNI6 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
DUSP12 | GO:0008270 | Dual specificity protein phosphatase 12 | 10446167 |
DUSP12 | GO:0016791 | Dual specificity protein phosphatase 12 | 10446167 |
DUSP12 | GO:0016791 | Dual specificity protein phosphatase 12 | 24531476 |
DUSP12 | GO:0016311 | Dual specificity protein phosphatase 12 | 10446167 |
DUSP12 | GO:0016311 | Dual specificity protein phosphatase 12 | 24531476 |
DUSP12 | GO:0005634 | Dual specificity protein phosphatase 12 | 10446167 |
DUSP12 | GO:0005654 | Dual specificity protein phosphatase 12 | 0000052 |
DUSP12 | GO:0005737 | Dual specificity protein phosphatase 12 | 10446167 |
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RNA A-to-I events for DUSP12 |
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CAediting_117660(161750759, +), CAediting_117661(161751130, +), CAediting_117662(161751165, +), CAediting_117663(161751200, +), CAediting_117664(161753604, +), CAediting_117665(161753605, +), CAediting_117666(161753621, +), CAediting_117667(161753627, +), CAediting_117668(161753678, +), CAediting_117669(161754970, +), CAediting_117670(161755876, +), CAediting_117671(161755956, +), CAediting_117672(161755957, +), CAediting_117673(161755958, +), CAediting_117674(161755981, +), CAediting_117675(161755995, +), CAediting_117676(161756053, +), CAediting_117677(161756076, +), CAediting_117678(161756090, +), CAediting_117679(161756127, +), |
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RNA editing positional annotations for DUSP12 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_117660 | chr1_161750759_+ | intronic |
CAediting_117661 | chr1_161751130_+ | splicing |
CAediting_117662 | chr1_161751165_+ | exonic |
CAediting_117663 | chr1_161751200_+ | UTR3 |
CAediting_117664 | chr1_161753604_+ | intronic |
CAediting_117665 | chr1_161753605_+ | intronic |
CAediting_117666 | chr1_161753621_+ | intronic |
CAediting_117667 | chr1_161753627_+ | intronic |
CAediting_117668 | chr1_161753678_+ | intronic |
CAediting_117669 | chr1_161754970_+ | intronic |
CAediting_117670 | chr1_161755876_+ | intronic |
CAediting_117671 | chr1_161755956_+ | intronic |
CAediting_117672 | chr1_161755957_+ | intronic |
CAediting_117673 | chr1_161755958_+ | intronic |
CAediting_117674 | chr1_161755981_+ | intronic |
CAediting_117675 | chr1_161755995_+ | intronic |
CAediting_117676 | chr1_161756053_+ | intronic |
CAediting_117677 | chr1_161756076_+ | intronic |
CAediting_117678 | chr1_161756090_+ | intronic |
CAediting_117679 | chr1_161756127_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_117660 | chr1_161750759_+ | SINE | Alu | AluSx4 |
CAediting_117661 | chr1_161751130_+ | SINE | Alu | AluJb |
CAediting_117662 | chr1_161751165_+ | SINE | Alu | AluJb |
CAediting_117663 | chr1_161751200_+ | SINE | Alu | AluJb |
CAediting_117664 | chr1_161753604_+ | SINE | Alu | FLAM_C |
CAediting_117665 | chr1_161753605_+ | SINE | Alu | FLAM_C |
CAediting_117666 | chr1_161753621_+ | SINE | Alu | FLAM_C |
CAediting_117667 | chr1_161753627_+ | SINE | Alu | FLAM_C |
CAediting_117668 | chr1_161753678_+ | SINE | Alu | FLAM_C |
CAediting_117669 | chr1_161754970_+ | SINE | Alu | AluSp |
CAediting_117670 | chr1_161755876_+ | SINE | Alu | AluSx1 |
CAediting_117671 | chr1_161755956_+ | SINE | Alu | AluSx1 |
CAediting_117672 | chr1_161755957_+ | SINE | Alu | AluSx1 |
CAediting_117673 | chr1_161755958_+ | SINE | Alu | AluSx1 |
CAediting_117674 | chr1_161755981_+ | SINE | Alu | AluSx1 |
CAediting_117675 | chr1_161755995_+ | SINE | Alu | AluSx1 |
CAediting_117676 | chr1_161756053_+ | SINE | Alu | AluSx1 |
CAediting_117677 | chr1_161756076_+ | SINE | Alu | AluSx1 |
CAediting_117678 | chr1_161756090_+ | SINE | Alu | AluSx1 |
CAediting_117679 | chr1_161756127_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for DUSP12 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_117661 | chr1_161751130_+ | 161751111:161751133 | 3SS | 0+1i | TTTATTTTTATTTTGATATAGGG | -13.43 | TTTATTTTTATTTTGATATGGGG | -4.68 |
IR | CAediting_117670 | chr1_161755876_+ | 161755857:161755879 | 3SS | 0+1i | TCTGAATTTCTTTTTTTTGAGAC | -6.54 | TCTGAATTTCTTTTTTTTGGGAC | 2.21 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for DUSP12 |
![]() * The grey color means N/A. |
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BRCA.CAediting_117673.ENSG00000081721.DUSP12.png ![]() |
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Protein coding region RNA A-to-I editings for DUSP12 |
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The effects of the RNA editing to the miRNA binding sites for DUSP12 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_117663 | chr1_161751200_+ | ENSG00000081721.10 | ENST00000490591 | hsa-miR-3940-3p | 161751197 | 161751203 | 7mer-m8 | 161751183 | 161751204 | 140.00 | -14.50 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_117663 | chr1_161751200_+ | ENSG00000081721.10 | ENST00000490591 | hsa-miR-661 | 161751196 | 161751202 | 7mer-m8 | 161751179 | 161751203 | 152 | -24.14 |
CAediting_117663 | chr1_161751200_+ | ENSG00000081721.10 | ENST00000490591 | hsa-miR-6779-5p | 161751193 | 161751199 | 7mer-m8 | 161751182 | 161751200 | 148 | -25.79 |
CAediting_117663 | chr1_161751200_+ | ENSG00000081721.10 | ENST00000490591 | hsa-miR-6780a-5p | 161751193 | 161751199 | 7mer-m8 | 161751176 | 161751200 | 155 | -29.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_396018 | chr5_1062918_- | ENSG00000081721.10 | ENST00000484291 | hsa-miR-4635 | 161752381 | 161752388 | 8mer-1a | 161752369 | 161752388 | 153 | -17.4 |
CAediting_1306323 | chr19_13836462_- | ENSG00000081721.10 | ENST00000484291 | hsa-miR-27a-3p | 161753109 | 161753116 | 8mer-1a | 161753094 | 161753116 | 152 | -20.39 |
CAediting_396018 | chr5_1062918_- | ENSG00000081721.10 | ENST00000464004 | hsa-miR-4635 | 161752381 | 161752388 | 8mer-1a | 161752369 | 161752388 | 153 | -17.4 |
CAediting_442554 | chr5_154685830_+ | ENSG00000081721.10 | ENST00000490591 | hsa-miR-1303 | 161751310 | 161751316 | 7mer-m8 | 161751297 | 161751317 | 152 | -16.91 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for DUSP12 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000490591.1 | nonsense_mediated_decay | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_117662 | ENST00000490591.1 | chr1_161751165_+ | -242.20 | -242.50 | -243.20 |
CAediting_117663 | ENST00000490591.1 | chr1_161751200_+ | -242.50 | -242.50 | -243.20 |
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Relation with ADAR for DUSP12 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_117672 | chr1_161755957_+ | 0.026288016046116 | 0.178478963719411 | . | . | . | . |
LUAD | CAediting_117673 | chr1_161755958_+ | . | . | . | . | 0.0108017143852773 | 0.302928893621664 |
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Relation with cancer stages for DUSP12 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_117672 | chr1_161755957_+ | 0.0281856617026869 | 0.178646773895685 |
KIRC | pathologic_stage | CAediting_117673 | chr1_161755958_+ | 0.00713997931835216 | 0.35568244014548 |
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Relation with survival for DUSP12 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for DUSP12 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DUSP12 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |