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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: GALNT6 (CAeditome ID:11226)

Gene summary for GALNT6

check button Gene summary
Gene informationGene symbol

GALNT6

Gene ID

11226

Gene namepolypeptide N-acetylgalactosaminyltransferase 6
SynonymsGALNAC-T6|GalNAcT6
Cytomap

12q13.13

Type of geneprotein-coding
Descriptionpolypeptide N-acetylgalactosaminyltransferase 6GalNAc transferase 6UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6UDP-N-acetyl-alpha-D-galactosamine:polypept
Modification date20210518
UniProtAcc

Q8NCL4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
GALNT6

GO:0005794

Polypeptide N-acetylgalactosaminyltransferase 6

12506059

GALNT6

GO:0048471

Polypeptide N-acetylgalactosaminyltransferase 6

12506059


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RNA A-to-I events for GALNT6

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000139629.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_891399(51352677, -), CAediting_891400(51352678, -), CAediting_891401(51352744, -), CAediting_891402(51352754, -), CAediting_891403(51352755, -), CAediting_891404(51352836, -), CAediting_891405(51352876, -), CAediting_891406(51352899, -), CAediting_891407(51352904, -), CAediting_891408(51352922, -), CAediting_891409(51352928, -), CAediting_891410(51352939, -), CAediting_891411(51352944, -), CAediting_891412(51352945, -), CAediting_891413(51352963, -), CAediting_891414(51353398, -), CAediting_891415(51353411, -), CAediting_891416(51353430, -), CAediting_891417(51353438, -), CAediting_891418(51353442, -), CAediting_891419(51353455, -), CAediting_891420(51353462, -), CAediting_891421(51353472, -), CAediting_891422(51353475, -), CAediting_891423(51353476, -), CAediting_891424(51353478, -), CAediting_891425(51353485, -), CAediting_891426(51353491, -), CAediting_891427(51353498, -), CAediting_891428(51353508, -), CAediting_891429(51353514, -), CAediting_891430(51353526, -), CAediting_891431(51353547, -), CAediting_891432(51353549, -), CAediting_891433(51353552, -), CAediting_891434(51353563, -), CAediting_891435(51353565, -), CAediting_891436(51353595, -), CAediting_891437(51353607, -), CAediting_891438(51353616, -), CAediting_891439(51353620, -), CAediting_891440(51353649, -), CAediting_891441(51353780, -), CAediting_891442(51353828, -), CAediting_891443(51353865, -), CAediting_891444(51353871, -), CAediting_891445(51353872, -), CAediting_891446(51353882, -), CAediting_891447(51353888, -), CAediting_891448(51353962, -), CAediting_891449(51353970, -), CAediting_891450(51353981, -), CAediting_891451(51353982, -), CAediting_891452(51354035, -), CAediting_891453(51365980, -), CAediting_891454(51365985, -), CAediting_891455(51365986, -), CAediting_891456(51366020, -), CAediting_891457(51366042, -), CAediting_891458(51366056, -), CAediting_891459(51366871, -), CAediting_891460(51366883, -), CAediting_891461(51366884, -), CAediting_891462(51366925, -), CAediting_891463(51366936, -), CAediting_891464(51366962, -), CAediting_891465(51367092, -), CAediting_891466(51367098, -), CAediting_891467(51367157, -), CAediting_891468(51367173, -), CAediting_891469(51367218, -), CAediting_891470(51367352, -), CAediting_891471(51367391, -), CAediting_891472(51368411, -), CAediting_891473(51368412, -), CAediting_891474(51368497, -), CAediting_891475(51368519, -), CAediting_891476(51368533, -), CAediting_891477(51368542, -), CAediting_891478(51368543, -), CAediting_891479(51368545, -), CAediting_891480(51368553, -), CAediting_891481(51368579, -), CAediting_891482(51368624, -), CAediting_891483(51368679, -), CAediting_891484(51370353, -), CAediting_891485(51370373, -), CAediting_891486(51370379, -), CAediting_891487(51370382, -), CAediting_891488(51370395, -), CAediting_891489(51370396, -), CAediting_891490(51370452, -), CAediting_891491(51370453, -), CAediting_891492(51370488, -), CAediting_891493(51370794, -), CAediting_891494(51370853, -), CAediting_891495(51371287, -), CAediting_891496(51371365, -), CAediting_891497(51372293, -), CAediting_891498(51372347, -), CAediting_891499(51372408, -), CAediting_891500(51372488, -), CAediting_891501(51372490, -), CAediting_891502(51375784, -), CAediting_891503(51375790, -), CAediting_891504(51375902, -), CAediting_891505(51375929, -), CAediting_891506(51375933, -), CAediting_891507(51375937, -), CAediting_891508(51375963, -), CAediting_891509(51375969, -), CAediting_891510(51375999, -), CAediting_891511(51376021, -), CAediting_891512(51376068, -), CAediting_891513(51376078, -), CAediting_891514(51376081, -), CAediting_891515(51376092, -), CAediting_891516(51376102, -), CAediting_891517(51376137, -), CAediting_891518(51376138, -), CAediting_891519(51376145, -), CAediting_891520(51376154, -), CAediting_891521(51376377, -), CAediting_891522(51376389, -), CAediting_891523(51376417, -), CAediting_891524(51384447, -), CAediting_891525(51384462, -), CAediting_891526(51384529, -), CAediting_891527(51384568, -), CAediting_891528(51384570, -), CAediting_891529(51384616, -), CAediting_891530(51384656, -), CAediting_891531(51384791, -), CAediting_891532(51384802, -), CAediting_891533(51384825, -), CAediting_891534(51384828, -), CAediting_891535(51384832, -), CAediting_891536(51384879, -), CAediting_891537(51385024, -), CAediting_891538(51385030, -), CAediting_891539(51385061, -), CAediting_891540(51385117, -), CAediting_891541(51385121, -), CAediting_891542(51385129, -), CAediting_891543(51385153, -), CAediting_891544(51385163, -), CAediting_891545(51385165, -), CAediting_891546(51385166, -), CAediting_891547(51385167, -), CAediting_891548(51385170, -), CAediting_891549(51385188, -), CAediting_891550(51385205, -), CAediting_891551(51385208, -), CAediting_891552(51385213, -), CAediting_891553(51385235, -), CAediting_891554(51385239, -), CAediting_891555(51385240, -), CAediting_891556(51385253, -), CAediting_891557(51385262, -), CAediting_891558(51385268, -), CAediting_891559(51385270, -), CAediting_891560(51385280, -), CAediting_891561(51390284, -), CAediting_891562(51390291, -), CAediting_891563(51390295, -), CAediting_891564(51390359, -), CAediting_891565(51390360, -), CAediting_891566(51390396, -),

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RNA editing positional annotations for GALNT6 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_891399chr12_51352677_-UTR3
CAediting_891400chr12_51352678_-UTR3
CAediting_891401chr12_51352744_-UTR3
CAediting_891402chr12_51352754_-UTR3
CAediting_891403chr12_51352755_-UTR3
CAediting_891404chr12_51352836_-UTR3
CAediting_891405chr12_51352876_-UTR3
CAediting_891406chr12_51352899_-UTR3
CAediting_891407chr12_51352904_-UTR3
CAediting_891408chr12_51352922_-UTR3
CAediting_891409chr12_51352928_-UTR3
CAediting_891410chr12_51352939_-UTR3
CAediting_891411chr12_51352944_-UTR3
CAediting_891412chr12_51352945_-UTR3
CAediting_891413chr12_51352963_-UTR3
CAediting_891414chr12_51353398_-UTR3
CAediting_891415chr12_51353411_-UTR3
CAediting_891416chr12_51353430_-UTR3
CAediting_891417chr12_51353438_-UTR3
CAediting_891418chr12_51353442_-UTR3
CAediting_891419chr12_51353455_-UTR3
CAediting_891420chr12_51353462_-UTR3
CAediting_891421chr12_51353472_-UTR3
CAediting_891422chr12_51353475_-UTR3
CAediting_891423chr12_51353476_-UTR3
CAediting_891424chr12_51353478_-UTR3
CAediting_891425chr12_51353485_-UTR3
CAediting_891426chr12_51353491_-UTR3
CAediting_891427chr12_51353498_-UTR3
CAediting_891428chr12_51353508_-UTR3
CAediting_891429chr12_51353514_-UTR3
CAediting_891430chr12_51353526_-UTR3
CAediting_891431chr12_51353547_-UTR3
CAediting_891432chr12_51353549_-UTR3
CAediting_891433chr12_51353552_-UTR3
CAediting_891434chr12_51353563_-UTR3
CAediting_891435chr12_51353565_-UTR3
CAediting_891436chr12_51353595_-UTR3
CAediting_891437chr12_51353607_-UTR3
CAediting_891438chr12_51353616_-UTR3
CAediting_891439chr12_51353620_-UTR3
CAediting_891440chr12_51353649_-UTR3
CAediting_891441chr12_51353780_-ncRNA_exonic
CAediting_891442chr12_51353828_-ncRNA_exonic
CAediting_891443chr12_51353865_-ncRNA_exonic
CAediting_891444chr12_51353871_-ncRNA_exonic
CAediting_891445chr12_51353872_-ncRNA_exonic
CAediting_891446chr12_51353882_-ncRNA_exonic
CAediting_891447chr12_51353888_-ncRNA_exonic
CAediting_891448chr12_51353962_-ncRNA_exonic
CAediting_891449chr12_51353970_-ncRNA_exonic
CAediting_891450chr12_51353981_-ncRNA_exonic
CAediting_891451chr12_51353982_-ncRNA_exonic
CAediting_891452chr12_51354035_-ncRNA_exonic
CAediting_891453chr12_51365980_-intronic
CAediting_891454chr12_51365985_-intronic
CAediting_891455chr12_51365986_-intronic
CAediting_891456chr12_51366020_-intronic
CAediting_891457chr12_51366042_-intronic
CAediting_891458chr12_51366056_-intronic
CAediting_891459chr12_51366871_-intronic
CAediting_891460chr12_51366883_-intronic
CAediting_891461chr12_51366884_-intronic
CAediting_891462chr12_51366925_-intronic
CAediting_891463chr12_51366936_-intronic
CAediting_891464chr12_51366962_-intronic
CAediting_891465chr12_51367092_-intronic
CAediting_891466chr12_51367098_-intronic
CAediting_891467chr12_51367157_-intronic
CAediting_891468chr12_51367173_-intronic
CAediting_891469chr12_51367218_-intronic
CAediting_891470chr12_51367352_-intronic
CAediting_891471chr12_51367391_-intronic
CAediting_891472chr12_51368411_-intronic
CAediting_891473chr12_51368412_-intronic
CAediting_891474chr12_51368497_-intronic
CAediting_891475chr12_51368519_-intronic
CAediting_891476chr12_51368533_-intronic
CAediting_891477chr12_51368542_-intronic
CAediting_891478chr12_51368543_-intronic
CAediting_891479chr12_51368545_-intronic
CAediting_891480chr12_51368553_-intronic
CAediting_891481chr12_51368579_-intronic
CAediting_891482chr12_51368624_-intronic
CAediting_891483chr12_51368679_-intronic
CAediting_891484chr12_51370353_-intronic
CAediting_891485chr12_51370373_-intronic
CAediting_891486chr12_51370379_-intronic
CAediting_891487chr12_51370382_-intronic
CAediting_891488chr12_51370395_-intronic
CAediting_891489chr12_51370396_-intronic
CAediting_891490chr12_51370452_-intronic
CAediting_891491chr12_51370453_-intronic
CAediting_891492chr12_51370488_-intronic
CAediting_891493chr12_51370794_-intronic
CAediting_891494chr12_51370853_-intronic
CAediting_891495chr12_51371287_-intronic
CAediting_891496chr12_51371365_-intronic
CAediting_891497chr12_51372293_-intronic
CAediting_891498chr12_51372347_-intronic
CAediting_891499chr12_51372408_-intronic
CAediting_891500chr12_51372488_-intronic
CAediting_891501chr12_51372490_-intronic
CAediting_891502chr12_51375784_-intronic
CAediting_891503chr12_51375790_-intronic
CAediting_891504chr12_51375902_-intronic
CAediting_891505chr12_51375929_-intronic
CAediting_891506chr12_51375933_-intronic
CAediting_891507chr12_51375937_-intronic
CAediting_891508chr12_51375963_-intronic
CAediting_891509chr12_51375969_-intronic
CAediting_891510chr12_51375999_-intronic
CAediting_891511chr12_51376021_-intronic
CAediting_891512chr12_51376068_-intronic
CAediting_891513chr12_51376078_-intronic
CAediting_891514chr12_51376081_-intronic
CAediting_891515chr12_51376092_-intronic
CAediting_891516chr12_51376102_-intronic
CAediting_891517chr12_51376137_-intronic
CAediting_891518chr12_51376138_-intronic
CAediting_891519chr12_51376145_-intronic
CAediting_891520chr12_51376154_-intronic
CAediting_891521chr12_51376377_-intronic
CAediting_891522chr12_51376389_-intronic
CAediting_891523chr12_51376417_-intronic
CAediting_891524chr12_51384447_-ncRNA_intronic
CAediting_891525chr12_51384462_-ncRNA_intronic
CAediting_891526chr12_51384529_-ncRNA_intronic
CAediting_891527chr12_51384568_-ncRNA_intronic
CAediting_891528chr12_51384570_-ncRNA_intronic
CAediting_891529chr12_51384616_-ncRNA_intronic
CAediting_891530chr12_51384656_-ncRNA_intronic
CAediting_891531chr12_51384791_-ncRNA_intronic
CAediting_891532chr12_51384802_-ncRNA_intronic
CAediting_891533chr12_51384825_-ncRNA_intronic
CAediting_891534chr12_51384828_-ncRNA_intronic
CAediting_891535chr12_51384832_-ncRNA_intronic
CAediting_891536chr12_51384879_-ncRNA_intronic
CAediting_891537chr12_51385024_-ncRNA_intronic
CAediting_891538chr12_51385030_-ncRNA_intronic
CAediting_891539chr12_51385061_-ncRNA_intronic
CAediting_891540chr12_51385117_-ncRNA_intronic
CAediting_891541chr12_51385121_-ncRNA_intronic
CAediting_891542chr12_51385129_-ncRNA_intronic
CAediting_891543chr12_51385153_-ncRNA_intronic
CAediting_891544chr12_51385163_-ncRNA_intronic
CAediting_891545chr12_51385165_-ncRNA_intronic
CAediting_891546chr12_51385166_-ncRNA_intronic
CAediting_891547chr12_51385167_-ncRNA_intronic
CAediting_891548chr12_51385170_-ncRNA_intronic
CAediting_891549chr12_51385188_-ncRNA_intronic
CAediting_891550chr12_51385205_-ncRNA_intronic
CAediting_891551chr12_51385208_-ncRNA_intronic
CAediting_891552chr12_51385213_-ncRNA_intronic
CAediting_891553chr12_51385235_-ncRNA_intronic
CAediting_891554chr12_51385239_-ncRNA_intronic
CAediting_891555chr12_51385240_-ncRNA_intronic
CAediting_891556chr12_51385253_-ncRNA_intronic
CAediting_891557chr12_51385262_-ncRNA_intronic
CAediting_891558chr12_51385268_-ncRNA_intronic
CAediting_891559chr12_51385270_-ncRNA_intronic
CAediting_891560chr12_51385280_-ncRNA_intronic
CAediting_891561chr12_51390284_-ncRNA_intronic
CAediting_891562chr12_51390291_-ncRNA_intronic
CAediting_891563chr12_51390295_-ncRNA_intronic
CAediting_891564chr12_51390359_-ncRNA_intronic
CAediting_891565chr12_51390360_-ncRNA_intronic
CAediting_891566chr12_51390396_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_891399chr12_51352677_-SINEAluAluSq
CAediting_891400chr12_51352678_-SINEAluAluSq
CAediting_891401chr12_51352744_-SINEAluAluSq
CAediting_891402chr12_51352754_-SINEAluAluSq
CAediting_891403chr12_51352755_-SINEAluAluSq
CAediting_891404chr12_51352836_-SINEAluAluSq
CAediting_891405chr12_51352876_-SINEAluAluSq
CAediting_891406chr12_51352899_-SINEAluAluSq
CAediting_891407chr12_51352904_-SINEAluAluSq
CAediting_891408chr12_51352922_-SINEAluAluSq
CAediting_891409chr12_51352928_-SINEAluAluSq
CAediting_891410chr12_51352939_-SINEAluAluSq
CAediting_891411chr12_51352944_-SINEAluAluSq
CAediting_891412chr12_51352945_-SINEAluAluSq
CAediting_891413chr12_51352963_-SINEAluAluSq
CAediting_891414chr12_51353398_-SINEAluAluSq2
CAediting_891415chr12_51353411_-SINEAluAluSq2
CAediting_891416chr12_51353430_-SINEAluAluSq2
CAediting_891417chr12_51353438_-SINEAluAluSq2
CAediting_891418chr12_51353442_-SINEAluAluSq2
CAediting_891419chr12_51353455_-SINEAluAluSq2
CAediting_891420chr12_51353462_-SINEAluAluSq2
CAediting_891421chr12_51353472_-SINEAluAluSq2
CAediting_891422chr12_51353475_-SINEAluAluSq2
CAediting_891423chr12_51353476_-SINEAluAluSq2
CAediting_891424chr12_51353478_-SINEAluAluSq2
CAediting_891425chr12_51353485_-SINEAluAluSq2
CAediting_891426chr12_51353491_-SINEAluAluSq2
CAediting_891427chr12_51353498_-SINEAluAluSq2
CAediting_891428chr12_51353508_-SINEAluAluSq2
CAediting_891429chr12_51353514_-SINEAluAluSq2
CAediting_891430chr12_51353526_-SINEAluAluSq2
CAediting_891431chr12_51353547_-SINEAluAluSq2
CAediting_891432chr12_51353549_-SINEAluAluSq2
CAediting_891433chr12_51353552_-SINEAluAluSq2
CAediting_891434chr12_51353563_-SINEAluAluSq2
CAediting_891435chr12_51353565_-SINEAluAluSq2
CAediting_891436chr12_51353595_-SINEAluAluSq2
CAediting_891437chr12_51353607_-SINEAluAluSq2
CAediting_891438chr12_51353616_-SINEAluAluSq2
CAediting_891439chr12_51353620_-SINEAluAluSq2
CAediting_891440chr12_51353649_-SINEAluAluSq2
CAediting_891441chr12_51353780_-SINEAluAluJb
CAediting_891442chr12_51353828_-SINEAluAluJb
CAediting_891443chr12_51353865_-SINEAluAluJb
CAediting_891444chr12_51353871_-SINEAluAluJb
CAediting_891445chr12_51353872_-SINEAluAluJb
CAediting_891446chr12_51353882_-SINEAluAluJb
CAediting_891447chr12_51353888_-SINEAluAluJb
CAediting_891448chr12_51353962_-SINEAluAluJb
CAediting_891449chr12_51353970_-SINEAluAluJb
CAediting_891450chr12_51353981_-SINEAluAluJb
CAediting_891451chr12_51353982_-SINEAluAluJb
CAediting_891452chr12_51354035_-SINEAluAluJb
CAediting_891453chr12_51365980_-SINEAluAluSz
CAediting_891454chr12_51365985_-SINEAluAluSz
CAediting_891455chr12_51365986_-SINEAluAluSz
CAediting_891456chr12_51366020_-SINEAluAluSz
CAediting_891457chr12_51366042_-SINEAluAluSz
CAediting_891458chr12_51366056_-SINEAluAluSz
CAediting_891459chr12_51366871_-SINEAluAluSz
CAediting_891460chr12_51366883_-SINEAluAluSz
CAediting_891461chr12_51366884_-SINEAluAluSz
CAediting_891462chr12_51366925_-SINEAluAluSz
CAediting_891463chr12_51366936_-SINEAluAluSz
CAediting_891464chr12_51366962_-SINEAluAluSz
CAediting_891465chr12_51367092_-SINEAluAluSp
CAediting_891466chr12_51367098_-SINEAluAluSp
CAediting_891467chr12_51367157_-SINEAluAluSp
CAediting_891468chr12_51367173_-SINEAluAluSp
CAediting_891469chr12_51367218_-SINEAluAluSp
CAediting_891470chr12_51367352_-SINEAluAluSz
CAediting_891471chr12_51367391_-SINEAluAluSz
CAediting_891472chr12_51368411_-SINEAluAluSx1
CAediting_891473chr12_51368412_-SINEAluAluSx1
CAediting_891474chr12_51368497_-SINEAluAluSx1
CAediting_891475chr12_51368519_-SINEAluAluSx1
CAediting_891476chr12_51368533_-SINEAluAluSx1
CAediting_891477chr12_51368542_-SINEAluAluSx1
CAediting_891478chr12_51368543_-SINEAluAluSx1
CAediting_891479chr12_51368545_-SINEAluAluSx1
CAediting_891480chr12_51368553_-SINEAluAluSx1
CAediting_891481chr12_51368579_-SINEAluAluSx1
CAediting_891482chr12_51368624_-SINEAluAluSx1
CAediting_891483chr12_51368679_-SINEAluAluSx1
CAediting_891484chr12_51370353_-SINEAluAluSp
CAediting_891485chr12_51370373_-SINEAluAluSp
CAediting_891486chr12_51370379_-SINEAluAluSp
CAediting_891487chr12_51370382_-SINEAluAluSp
CAediting_891488chr12_51370395_-SINEAluAluSp
CAediting_891489chr12_51370396_-SINEAluAluSp
CAediting_891490chr12_51370452_-SINEAluAluSp
CAediting_891491chr12_51370453_-SINEAluAluSp
CAediting_891492chr12_51370488_-SINEAluAluSp
CAediting_891493chr12_51370794_-SINEAluFLAM_C
CAediting_891494chr12_51370853_-SINEAluFLAM_C
CAediting_891495chr12_51371287_-SINEAluAluSq2
CAediting_891496chr12_51371365_-SINEAluAluSq2
CAediting_891497chr12_51372293_-SINEAluAluJb
CAediting_891498chr12_51372347_-SINEAluAluJb
CAediting_891499chr12_51372408_-SINEAluAluJb
CAediting_891500chr12_51372488_-SINEAluAluJb
CAediting_891501chr12_51372490_-SINEAluAluJb
CAediting_891502chr12_51375784_-SINEAluAluSz
CAediting_891503chr12_51375790_-SINEAluAluSz
CAediting_891504chr12_51375902_-SINEAluAluSz
CAediting_891505chr12_51375929_-SINEAluAluSz
CAediting_891506chr12_51375933_-SINEAluAluSz
CAediting_891507chr12_51375937_-SINEAluAluSz
CAediting_891508chr12_51375963_-SINEAluAluSz
CAediting_891509chr12_51375969_-SINEAluAluSz
CAediting_891510chr12_51375999_-SINEAluAluSz
CAediting_891511chr12_51376021_-SINEAluAluSz
CAediting_891512chr12_51376068_-SINEAluAluSz
CAediting_891513chr12_51376078_-SINEAluAluSz
CAediting_891514chr12_51376081_-SINEAluAluSz
CAediting_891515chr12_51376092_-SINEAluAluSz
CAediting_891516chr12_51376102_-SINEAluAluSz
CAediting_891517chr12_51376137_-SINEAluAluSz
CAediting_891518chr12_51376138_-SINEAluAluSz
CAediting_891519chr12_51376145_-SINEAluAluSz
CAediting_891520chr12_51376154_-SINEAluAluSz
CAediting_891521chr12_51376377_-SINEAluAluSp
CAediting_891522chr12_51376389_-SINEAluAluSp
CAediting_891523chr12_51376417_-SINEAluAluSp
CAediting_891524chr12_51384447_-SINEAluAluSz
CAediting_891525chr12_51384462_-SINEAluAluSz
CAediting_891526chr12_51384529_-SINEAluAluSz
CAediting_891527chr12_51384568_-SINEAluAluSz
CAediting_891528chr12_51384570_-SINEAluAluSz
CAediting_891529chr12_51384616_-SINEAluAluSz
CAediting_891530chr12_51384656_-SINEAluAluSz
CAediting_891531chr12_51384791_-SINEAluAluJr
CAediting_891532chr12_51384802_-SINEAluAluJr
CAediting_891533chr12_51384825_-SINEAluAluJr
CAediting_891534chr12_51384828_-SINEAluAluJr
CAediting_891535chr12_51384832_-SINEAluAluJr
CAediting_891536chr12_51384879_-SINEAluAluJr
CAediting_891537chr12_51385024_-SINEAluAluJo
CAediting_891538chr12_51385030_-SINEAluAluJo
CAediting_891539chr12_51385061_-SINEAluAluJo
CAediting_891540chr12_51385117_-SINEAluAluJo
CAediting_891541chr12_51385121_-SINEAluAluJo
CAediting_891542chr12_51385129_-SINEAluAluJo
CAediting_891543chr12_51385153_-SINEAluAluJo
CAediting_891544chr12_51385163_-SINEAluAluJo
CAediting_891545chr12_51385165_-SINEAluAluJo
CAediting_891546chr12_51385166_-SINEAluAluJo
CAediting_891547chr12_51385167_-SINEAluAluJo
CAediting_891548chr12_51385170_-SINEAluAluJo
CAediting_891549chr12_51385188_-SINEAluAluJo
CAediting_891550chr12_51385205_-SINEAluAluJo
CAediting_891551chr12_51385208_-SINEAluAluJo
CAediting_891552chr12_51385213_-SINEAluAluJo
CAediting_891553chr12_51385235_-SINEAluAluJo
CAediting_891554chr12_51385239_-SINEAluAluJo
CAediting_891555chr12_51385240_-SINEAluAluJo
CAediting_891556chr12_51385253_-SINEAluAluJo
CAediting_891557chr12_51385262_-SINEAluAluJo
CAediting_891558chr12_51385268_-SINEAluAluJo
CAediting_891559chr12_51385270_-SINEAluAluJo
CAediting_891560chr12_51385280_-SINEAluAluJo
CAediting_891561chr12_51390284_-SINEAluAluSq2
CAediting_891562chr12_51390291_-SINEAluAluSq2
CAediting_891563chr12_51390295_-SINEAluAluSq2
CAediting_891564chr12_51390359_-SINEAluAluSq2
CAediting_891565chr12_51390360_-SINEAluAluSq2
CAediting_891566chr12_51390396_-SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for GALNT6

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_891549chr12_51385188_-51385181:513851895SS2+0iTAGTGAGAC-12.37TGGTGAGAC-16.57
MEX_2CAediting_891549chr12_51385188_-51385181:513851895SS2+0iTAGTGAGAC-12.37TGGTGAGAC-16.57
MEX_1CAediting_891549chr12_51385188_-51385181:513851895SS2+0iTAGTGAGAC-12.37TGGTGAGAC-16.57

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000139629.14.GALNT6.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000139629.14.GALNT6.
boxplot

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GALNT6

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
STAD.CAediting_891549.ENSG00000139629.GALNT6.png
Soverview

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Protein coding region RNA A-to-I editings for GALNT6

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for GALNT6

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_891400chr12_51352678_-ENSG00000139629.14ENST00000543196hsa-miR-3667-3p51352673513526808mer-1a5135267351352694145.00-14.89
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-130a-5p51352676513526838mer-1a5135267651352697140.00-7.53
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-3059-5p51352671513526788mer-1a5135267151352694150.00-20.87
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-318351352673513526808mer-1a5135267351352694140.00-16.31
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-4723-3p51352673513526808mer-1a5135267351352694140.00-11.37
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-4753-3p51352676513526827mer-m85135267551352696154.00-9.24
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-6769b-3p51352673513526808mer-1a5135267351352693142.00-11.37
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-6780a-3p51352672513526787mer-1a5135267251352692140.00-11.74
CAediting_891399chr12_51352677_-ENSG00000139629.14ENST00000543196hsa-miR-7111-3p51352672513526798mer-1a5135267251352693150.00-13.96
CAediting_891408chr12_51352922_-ENSG00000139629.14ENST00000543196hsa-miR-153851352919513529257mer-m85135291851352940155.00-28.94
CAediting_891408chr12_51352922_-ENSG00000139629.14ENST00000543196hsa-miR-4745-3p51352919513529257mer-m85135291851352937152.00-27.73
CAediting_891411chr12_51352944_-ENSG00000139629.14ENST00000543196hsa-miR-367251352938513529458mer-1a5135293851352963151.00-16.03
CAediting_891411chr12_51352944_-ENSG00000139629.14ENST00000543196hsa-miR-6864-3p51352938513529458mer-1a5135293851352958142.00-12.35
CAediting_891412chr12_51352945_-ENSG00000139629.14ENST00000543196hsa-miR-513a-5p51352944513529507mer-m85135294351352960152.00-17.32
CAediting_891412chr12_51352945_-ENSG00000139629.14ENST00000543196hsa-miR-513a-5p51352944513529507mer-m85135294351352960152.00-17.32
CAediting_891416chr12_51353430_-ENSG00000139629.14ENST00000543196hsa-miR-652-3p51353426513534327mer-m85135342551353446146.00-18.26
CAediting_891419chr12_51353455_-ENSG00000139629.14ENST00000543196hsa-miR-128151353455513534617mer-m85135345451353470145.00-17.85
CAediting_891426chr12_51353491_-ENSG00000139629.14ENST00000543196hsa-miR-394351353487513534937mer-m85135348651353506146.00-22.28
CAediting_891427chr12_51353498_-ENSG00000139629.14ENST00000543196hsa-miR-1207-3p51353498513535047mer-m85135349751353515145.00-13.53
CAediting_891427chr12_51353498_-ENSG00000139629.14ENST00000543196hsa-miR-64651353496513535027mer-m85135349551353514152.00-24.32
CAediting_891432chr12_51353549_-ENSG00000139629.14ENST00000543196hsa-miR-222-5p51353547513535548mer-1a5135354751353567149.00-12.08
CAediting_891432chr12_51353549_-ENSG00000139629.14ENST00000543196hsa-miR-30a-3p51353546513535527mer-m85135354551353569154.00-16.53
CAediting_891432chr12_51353549_-ENSG00000139629.14ENST00000543196hsa-miR-30d-3p51353546513535527mer-m85135354551353567153.00-16.69
CAediting_891432chr12_51353549_-ENSG00000139629.14ENST00000543196hsa-miR-30e-3p51353546513535527mer-m85135354551353569154.00-18.59
CAediting_891432chr12_51353549_-ENSG00000139629.14ENST00000543196hsa-miR-93651353548513535558mer-1a5135354851353570155.00-24.15
CAediting_891433chr12_51353552_-ENSG00000139629.14ENST00000543196hsa-miR-374b-3p51353547513535548mer-1a5135354751353569159.00-12.20
CAediting_891433chr12_51353552_-ENSG00000139629.14ENST00000543196hsa-miR-4756-3p51353552513535587mer-m85135355151353572150.00-19.15
CAediting_891436chr12_51353595_-ENSG00000139629.14ENST00000543196hsa-miR-378a-5p51353594513536007mer-m85135359351353614163.00-27.26
CAediting_891439chr12_51353620_-ENSG00000139629.14ENST00000543196hsa-miR-18a-3p51353615513536217mer-m85135361451353634147.00-21.43
CAediting_891439chr12_51353620_-ENSG00000139629.14ENST00000543196hsa-miR-317651353620513536267mer-m85135361951353637140.00-15.24
CAediting_891439chr12_51353620_-ENSG00000139629.14ENST00000543196hsa-miR-3922-3p51353620513536267mer-m85135361951353640141.00-17.02
CAediting_891439chr12_51353620_-ENSG00000139629.14ENST00000543196hsa-miR-874-3p51353616513536227mer-m85135361551353638156.00-31.64
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-1301-3p51353826513538327mer-m85135382551353854150.00-23.95
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-441851353824513538307mer-m85135382351353839146.00-20.38
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-504751353826513538327mer-m85135382551353845146.00-19.70
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-509-3-5p51353824513538307mer-m85135382351353841146.00-18.64
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-509-5p51353824513538307mer-m85135382351353843140.00-18.06
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-509-5p51353824513538307mer-m85135382351353843140.00-18.06
CAediting_891443chr12_51353865_-ENSG00000139629.14ENST00000543196hsa-miR-6849-3p51353865513538717mer-m85135386451353886143.00-16.10
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-2276-5p51353869513538757mer-m85135386851353888142.00-25.58
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-392151353871513538777mer-m85135387051353891158.00-17.68
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-4653-5p51353871513538777mer-m85135387051353889144.00-16.40
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-4687-5p51353867513538737mer-m85135386651353887140.00-17.16
CAediting_891447chr12_51353888_-ENSG00000139629.14ENST00000543196hsa-miR-140-3p51353886513538927mer-m85135388551353905160.00-22.78
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-4716-5p51353961513539677mer-m85135396051353981142.00-12.90
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511a-3p51353957513539637mer-m85135395651353979146.00-23.75
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511a-3p51353957513539637mer-m85135395651353979146.00-23.75
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511a-3p51353957513539637mer-m85135395651353979146.00-23.75
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511a-3p51353957513539637mer-m85135395651353979146.00-23.75
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511b-3p51353957513539637mer-m85135395651353978140.00-21.45
CAediting_891448chr12_51353962_-ENSG00000139629.14ENST00000543196hsa-miR-6511b-3p51353957513539637mer-m85135395651353978140.00-21.45
CAediting_891449chr12_51353970_-ENSG00000139629.14ENST00000543196hsa-miR-6501-5p51353964513539707mer-1a5135396451353985140.00-24.59
CAediting_891450chr12_51353981_-ENSG00000139629.14ENST00000543196hsa-miR-120051353979513539846mer5135397851353997144.00-19.84
CAediting_891450chr12_51353981_-ENSG00000139629.14ENST00000543196hsa-miR-1211351353981513539877mer-m85135398051353998152.00-21.73
CAediting_891450chr12_51353981_-ENSG00000139629.14ENST00000543196hsa-miR-453951353981513539877mer-m85135398051354005157.00-23.24
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-3117-3p51354030513540367mer-m85135402951354051149.00-17.82
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-808351354030513540378mer-1a5135403051354050149.00-16.61
CAediting_891401chr12_51352744_-ENSG00000139629.14ENST00000543196hsa-miR-324-3p51352744513527507mer-m85135274351352765145.00-22.08
CAediting_891404chr12_51352836_-ENSG00000139629.14ENST00000543196hsa-miR-3190-5p51352831513528377mer-m85135283051352849143.00-16.24
CAediting_891404chr12_51352836_-ENSG00000139629.14ENST00000543196hsa-miR-548s51352832513528387mer-m85135283151352853145.00-11.31
CAediting_891407chr12_51352904_-ENSG00000139629.14ENST00000543196hsa-miR-4726-3p51352903513529097mer-m85135290251352926162.00-32.20
CAediting_891409chr12_51352928_-ENSG00000139629.14ENST00000543196hsa-miR-10392-3p51352922513529298mer-1a5135292251352945142.00-21.88
CAediting_891409chr12_51352928_-ENSG00000139629.14ENST00000543196hsa-miR-361-3p51352927513529337mer-m85135292651352946157.00-25.56
CAediting_891413chr12_51352963_-ENSG00000139629.14ENST00000543196hsa-miR-1292-3p51352961513529677mer-m85135296051352978152.00-29.00
CAediting_891414chr12_51353398_-ENSG00000139629.14ENST00000543196hsa-miR-57251353396513534038mer-1a5135339651353415140.00-17.16
CAediting_891417chr12_51353438_-ENSG00000139629.14ENST00000543196hsa-miR-4638-5p51353435513534428mer-1a5135343551353454146.00-20.28
CAediting_891418chr12_51353442_-ENSG00000139629.14ENST00000543196hsa-miR-324-3p51353442513534487mer-m85135344151353463149.00-24.91
CAediting_891424chr12_51353478_-ENSG00000139629.14ENST00000543196hsa-miR-6752-3p51353478513534847mer-m85135347751353496157.00-30.29
CAediting_891424chr12_51353478_-ENSG00000139629.14ENST00000543196hsa-miR-6801-3p51353476513534838mer-1a5135347651353495148.00-22.90
CAediting_891424chr12_51353478_-ENSG00000139629.14ENST00000543196hsa-miR-6810-3p51353476513534838mer-1a5135347651353498151.00-28.60
CAediting_891425chr12_51353485_-ENSG00000139629.14ENST00000543196hsa-miR-191351353480513534867mer-m85135347951353500147.00-22.10
CAediting_891425chr12_51353485_-ENSG00000139629.14ENST00000543196hsa-miR-6849-3p51353485513534917mer-m85135348451353505140.00-18.03
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-6886-5p51353507513535137mer-m85135350651353525153.00-20.79
CAediting_891434chr12_51353563_-ENSG00000139629.14ENST00000543196hsa-miR-412-3p51353563513535697mer-m85135356251353587154.00-20.67
CAediting_891434chr12_51353563_-ENSG00000139629.14ENST00000543196hsa-miR-6754-3p51353563513535697mer-m85135356251353586145.00-16.85
CAediting_891434chr12_51353563_-ENSG00000139629.14ENST00000543196hsa-miR-6837-3p51353563513535686mer5135356251353587146.00-17.48
CAediting_891434chr12_51353563_-ENSG00000139629.14ENST00000543196hsa-miR-6874-5p51353558513535647mer-m85135355751353578145.00-20.98
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-6838-3p51353776513537816mer5135377551353792151.00-23.27
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-120051353871513538777mer-m85135387051353891145.00-18.99
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-660-3p51353869513538757mer-m85135386851353889154.00-23.09
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-6791-3p51353868513538747mer-m85135386751353889158.00-22.44
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-6829-3p51353868513538747mer-m85135386751353886155.00-20.58

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-10394-5p51353507513535137mer-m85135350651353531153-22.62
CAediting_891411chr12_51352944_-ENSG00000139629.14ENST00000543196hsa-miR-10399-5p51352943513529497mer-m85135294251352963144-11.89
CAediting_891412chr12_51352945_-ENSG00000139629.14ENST00000543196hsa-miR-10399-5p51352943513529497mer-m85135294251352963144-11.89
CAediting_891436chr12_51353595_-ENSG00000139629.14ENST00000543196hsa-miR-11181-5p51353594513536018mer-1a5135359451353615141-16.89
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-118351353824513538307mer-m85135382351353849142-19.45
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-120551353507513535137mer-m85135350651353526152-18.6
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-1237-3p51353869513538757mer-m85135386851353888140-12.39
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-1237-3p51353869513538757mer-m85135386851353888140-12.39
CAediting_891437chr12_51353607_-ENSG00000139629.14ENST00000543196hsa-miR-125a-3p51353602513536098mer-1a5135360251353623148-18
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-1288-3p51353504513535107mer-m85135350351353523140-13.08
CAediting_891420chr12_51353462_-ENSG00000139629.14ENST00000543196hsa-miR-1343-3p51353459513534657mer-m85135345851353481143-23.88
CAediting_891426chr12_51353491_-ENSG00000139629.14ENST00000543196hsa-miR-150-5p51353490513534967mer-m85135348951353514142-16.16
CAediting_891424chr12_51353478_-ENSG00000139629.14ENST00000543196hsa-miR-197651353476513534838mer-1a5135347651353496149-21.37
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-200c-5p51353777513537837mer-m85135377651353797145-16.34
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-205-3p51354034513540407mer-m85135403351354051145-14.63
CAediting_891442chr12_51353828_-ENSG00000139629.14ENST00000543196hsa-miR-313751353825513538317mer-m85135382451353846148-23.61
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-315951354030513540367mer-1a5135403051354051140-20.13
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-316751354032513540387mer-m85135403151354052154-15.74
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-319951353502513535098mer-1a5135350251353524145-18.75
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-319951353502513535098mer-1a5135350251353524145-18.75
CAediting_891444chr12_51353871_-ENSG00000139629.14ENST00000543196hsa-miR-3614-3p51353867513538737mer-m85135386651353887150-15.57
CAediting_891445chr12_51353872_-ENSG00000139629.14ENST00000543196hsa-miR-3614-3p51353867513538737mer-m85135386651353887150-15.57
CAediting_891429chr12_51353514_-ENSG00000139629.14ENST00000543196hsa-miR-366551353508513535158mer-1a5135350851353525155-21.81
CAediting_891449chr12_51353970_-ENSG00000139629.14ENST00000543196hsa-miR-3934-3p51353967513539748mer-1a5135396751353988147-21.34
CAediting_891415chr12_51353411_-ENSG00000139629.14ENST00000543196hsa-miR-3934-3p51353408513534158mer-1a5135340851353429151-23.63
CAediting_891436chr12_51353595_-ENSG00000139629.14ENST00000543196hsa-miR-425651353594513536018mer-1a5135359451353611149-16.87
CAediting_891401chr12_51352744_-ENSG00000139629.14ENST00000543196hsa-miR-428451352740513527478mer-1a5135274051352757146-13.71
CAediting_891418chr12_51353442_-ENSG00000139629.14ENST00000543196hsa-miR-428451353438513534458mer-1a5135343851353455151-16.7
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-441851353506513535127mer-m85135350551353522145-14.84
CAediting_891405chr12_51352876_-ENSG00000139629.14ENST00000543196hsa-miR-443551352875513528828mer-1a5135287551352895146-18.86
CAediting_891405chr12_51352876_-ENSG00000139629.14ENST00000543196hsa-miR-443551352875513528828mer-1a5135287551352895146-18.86
CAediting_891404chr12_51352836_-ENSG00000139629.14ENST00000543196hsa-miR-4735-5p51352835513528417mer-m85135283451352855148-5.48
CAediting_891421chr12_51353472_-ENSG00000139629.14ENST00000543196hsa-miR-476551353469513534757mer-m85135346851353489145-13.79
CAediting_891405chr12_51352876_-ENSG00000139629.14ENST00000543196hsa-miR-4781-3p51352872513528787mer-m85135287151352889144-13.86
CAediting_891404chr12_51352836_-ENSG00000139629.14ENST00000543196hsa-miR-479451352831513528377mer-m85135283051352851140-12.23
CAediting_891419chr12_51353455_-ENSG00000139629.14ENST00000543196hsa-miR-5001-3p51353453513534597mer-m85135345251353476149-19.55
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-509-5p51353506513535127mer-m85135350551353526144-18.96
CAediting_891428chr12_51353508_-ENSG00000139629.14ENST00000543196hsa-miR-509-5p51353506513535127mer-m85135350551353526144-18.96
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-550a-3p51353777513537837mer-m85135377651353800153-21.6
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-550a-3p51353777513537837mer-m85135377651353800153-21.6
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-550a-3p51353777513537837mer-m85135377651353800153-21.6
CAediting_891440chr12_51353649_-ENSG00000139629.14ENST00000543196hsa-miR-552-3p51353643513536508mer-1a5135364351353663140-14.1
CAediting_891427chr12_51353498_-ENSG00000139629.14ENST00000543196hsa-miR-56251353495513535017mer-m85135349451353513150-15.24
CAediting_891427chr12_51353498_-ENSG00000139629.14ENST00000543196hsa-miR-569751353494513535007mer-m85135349351353514146-18.1
CAediting_891437chr12_51353607_-ENSG00000139629.14ENST00000543196hsa-miR-64051353607513536137mer-m85135360651353622154-22.14
CAediting_891420chr12_51353462_-ENSG00000139629.14ENST00000543196hsa-miR-660-3p51353457513534637mer-m85135345651353477154-18.54
CAediting_891404chr12_51352836_-ENSG00000139629.14ENST00000543196hsa-miR-664a-5p51352831513528377mer-m85135283051352853144-13.24
CAediting_891420chr12_51353462_-ENSG00000139629.14ENST00000543196hsa-miR-6742-3p51353459513534668mer-1a5135345951353478145-14.99
CAediting_891438chr12_51353616_-ENSG00000139629.14ENST00000543196hsa-miR-6747-3p51353614513536207mer-m85135361351353634154-23.03
CAediting_891409chr12_51352928_-ENSG00000139629.14ENST00000543196hsa-miR-6778-3p51352925513529317mer-m85135292451352944147-15.69
CAediting_891426chr12_51353491_-ENSG00000139629.14ENST00000543196hsa-miR-6778-3p51353488513534947mer-m85135348751353507140-14.56
CAediting_891420chr12_51353462_-ENSG00000139629.14ENST00000543196hsa-miR-6783-3p51353459513534657mer-m85135345851353478146-16.6
CAediting_891433chr12_51353552_-ENSG00000139629.14ENST00000543196hsa-miR-6832-5p51353551513535577mer-m85135355051353572146-16
CAediting_891419chr12_51353455_-ENSG00000139629.14ENST00000543196hsa-miR-6836-3p51353455513534617mer-m85135345451353474140-17.78
CAediting_891412chr12_51352945_-ENSG00000139629.14ENST00000543196hsa-miR-7151-3p51352944513529518mer-1a5135294451352960146-17.62
CAediting_891447chr12_51353888_-ENSG00000139629.14ENST00000543196hsa-miR-7151-3p51353888513538947mer-m85135388751353903142-19.84
CAediting_891402chr12_51352754_-ENSG00000139629.14ENST00000543196hsa-miR-71851352754513527607mer-m85135275351352772150-25.53
CAediting_891403chr12_51352755_-ENSG00000139629.14ENST00000543196hsa-miR-71851352754513527607mer-m85135275351352772150-25.53
CAediting_891429chr12_51353514_-ENSG00000139629.14ENST00000543196hsa-miR-76451353510513535167mer-m85135350951353534148-24.89
CAediting_891421chr12_51353472_-ENSG00000139629.14ENST00000543196hsa-miR-806251353470513534767mer-m85135346951353489141-11.25
CAediting_891422chr12_51353475_-ENSG00000139629.14ENST00000543196hsa-miR-806251353470513534767mer-m85135346951353489141-11.25
CAediting_891452chr12_51354035_-ENSG00000139629.14ENST00000543196hsa-miR-876-5p51354032513540387mer-m85135403151354053155-17.79
CAediting_891402chr12_51352754_-ENSG00000139629.14ENST00000543196hsa-miR-891b51352748513527558mer-1a5135274851352769142-16.47
CAediting_891441chr12_51353780_-ENSG00000139629.14ENST00000543196hsa-miR-92451353775513537817mer-m85135377451353795152-17.64
CAediting_891430chr12_51353526_-ENSG00000139629.14ENST00000543196hsa-miR-96-3p51353522513535276mer5135352151353540140-13.68

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000139629.14ENST00000543196hsa-miR-195-3p51354218513542247mer-m85135421751354237146-16.85
CAediting_1160181chr17_7017644_-ENSG00000139629.14ENST00000543196hsa-miR-195-3p51351405513514106mer5135140451351425144-19.65
CAediting_414656chr5_72878640_+ENSG00000139629.14ENST00000543196hsa-miR-4804-3p51351713513517208mer-1a5135171351351733140-12.65
CAediting_573001chr7_92204086_-ENSG00000139629.14ENST00000543196hsa-miR-1285-5p51351697513517037mer-m85135169651351716148-15.86
CAediting_1399425chr20_1392958_-ENSG00000139629.14ENST00000603641hsa-miR-6869-5p51358172513581787mer-m85135817151358193145-18.09
CAediting_524911chr7_5495852_-ENSG00000139629.14ENST00000603641hsa-miR-589-3p51355878513558847mer-m85135587751355900140-16.49

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_604450chr7_133034877_-ENSG00000139629.14ENST00000543196hsa-miR-365451353685513536917mer-m85135368451353701145-20.07

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GALNT6

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for GALNT6

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_891549chr12_51385188_-0.001072489090767050.307767286921447....

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Relation with cancer stages for GALNT6

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for GALNT6

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for GALNT6

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GALNT6

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource