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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: INMT (CAeditome ID:11185)

Gene summary for INMT

check button Gene summary
Gene informationGene symbol

INMT

Gene ID

11185

Gene nameindolethylamine N-methyltransferase
SynonymsTEMT
Cytomap

7p14.3

Type of geneprotein-coding
Descriptionindolethylamine N-methyltransferaseamine N-methyltransferasearomatic alkylamine N-methyltransferasearylamine N-methyltransferaseindolamine N-methyltransferasenicotine N-methyltransferasethioether S-methyltransferase
Modification date20210518
UniProtAcc

O95050

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
INMT

GO:0030748

Indolethylamine N-methyltransferase

10552930

INMT

GO:0009308

Indolethylamine N-methyltransferase

10552930

INMT

GO:0032259

Indolethylamine N-methyltransferase

10552930

INMT

GO:0005829

Indolethylamine N-methyltransferase

10552930


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RNA A-to-I events for INMT

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000241644.2

check button RNA A-to-I editing events in Cancer.
CAediting_534728(30719559, +), CAediting_534729(30719560, +), CAediting_534730(30735291, +), CAediting_534731(30735296, +), CAediting_534732(30745873, +), CAediting_534733(30745874, +), CAediting_534734(30745896, +), CAediting_534735(30745958, +), CAediting_534736(30747389, +), CAediting_534737(30747403, +), CAediting_534738(30747419, +), CAediting_534739(30747424, +), CAediting_534740(30747443, +), CAediting_534741(30747449, +), CAediting_534742(30747450, +), CAediting_534743(30747462, +), CAediting_534744(30747476, +), CAediting_534745(30747479, +), CAediting_534746(30747489, +), CAediting_534747(30747492, +), CAediting_534748(30747536, +), CAediting_534749(30747963, +), CAediting_534750(30747987, +), CAediting_534751(30747999, +), CAediting_534752(30748003, +), CAediting_534753(30748016, +), CAediting_534754(30748031, +), CAediting_534755(30748035, +), CAediting_534756(30748043, +), CAediting_534757(30748051, +), CAediting_534758(30748055, +), CAediting_534759(30748059, +), CAediting_534760(30748089, +), CAediting_534761(30748093, +), CAediting_534762(30748097, +), CAediting_534763(30748098, +), CAediting_534764(30756284, +), CAediting_534765(30756353, +), CAediting_534766(30756375, +), CAediting_534767(30756388, +), CAediting_534768(30756574, +), CAediting_534769(30756617, +), CAediting_534770(30756668, +), CAediting_534771(30756680, +), CAediting_534772(30756689, +), CAediting_534773(30757415, +),

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RNA editing positional annotations for INMT using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_534728chr7_30719559_+ncRNA_intronic
CAediting_534729chr7_30719560_+ncRNA_intronic
CAediting_534730chr7_30735291_+ncRNA_intronic
CAediting_534731chr7_30735296_+ncRNA_intronic
CAediting_534732chr7_30745873_+ncRNA_intronic
CAediting_534733chr7_30745874_+ncRNA_intronic
CAediting_534734chr7_30745896_+ncRNA_intronic
CAediting_534735chr7_30745958_+ncRNA_intronic
CAediting_534736chr7_30747389_+ncRNA_intronic
CAediting_534737chr7_30747403_+ncRNA_intronic
CAediting_534738chr7_30747419_+ncRNA_intronic
CAediting_534739chr7_30747424_+ncRNA_intronic
CAediting_534740chr7_30747443_+ncRNA_intronic
CAediting_534741chr7_30747449_+ncRNA_intronic
CAediting_534742chr7_30747450_+ncRNA_intronic
CAediting_534743chr7_30747462_+ncRNA_intronic
CAediting_534744chr7_30747476_+ncRNA_intronic
CAediting_534745chr7_30747479_+ncRNA_intronic
CAediting_534746chr7_30747489_+ncRNA_intronic
CAediting_534747chr7_30747492_+ncRNA_intronic
CAediting_534748chr7_30747536_+ncRNA_intronic
CAediting_534749chr7_30747963_+ncRNA_intronic
CAediting_534750chr7_30747987_+ncRNA_intronic
CAediting_534751chr7_30747999_+ncRNA_intronic
CAediting_534752chr7_30748003_+ncRNA_intronic
CAediting_534753chr7_30748016_+ncRNA_intronic
CAediting_534754chr7_30748031_+ncRNA_intronic
CAediting_534755chr7_30748035_+ncRNA_intronic
CAediting_534756chr7_30748043_+ncRNA_intronic
CAediting_534757chr7_30748051_+ncRNA_intronic
CAediting_534758chr7_30748055_+ncRNA_intronic
CAediting_534759chr7_30748059_+ncRNA_intronic
CAediting_534760chr7_30748089_+ncRNA_intronic
CAediting_534761chr7_30748093_+ncRNA_intronic
CAediting_534762chr7_30748097_+ncRNA_intronic
CAediting_534763chr7_30748098_+ncRNA_intronic
CAediting_534764chr7_30756284_+UTR3
CAediting_534765chr7_30756353_+UTR3
CAediting_534766chr7_30756375_+UTR3
CAediting_534767chr7_30756388_+UTR3
CAediting_534768chr7_30756574_+UTR3
CAediting_534769chr7_30756617_+UTR3
CAediting_534770chr7_30756668_+UTR3
CAediting_534771chr7_30756680_+UTR3
CAediting_534772chr7_30756689_+UTR3
CAediting_534773chr7_30757415_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_534728chr7_30719559_+LTRERVKLTR5B
CAediting_534729chr7_30719560_+LTRERVKLTR5B
CAediting_534730chr7_30735291_+SINEAluAluJr4
CAediting_534731chr7_30735296_+SINEAluAluJr4
CAediting_534732chr7_30745873_+SINEAluFLAM_C
CAediting_534733chr7_30745874_+SINEAluFLAM_C
CAediting_534734chr7_30745896_+SINEAluFLAM_C
CAediting_534735chr7_30745958_+SINEAluFLAM_C
CAediting_534736chr7_30747389_+SINEAluAluJr
CAediting_534737chr7_30747403_+SINEAluAluJr
CAediting_534738chr7_30747419_+SINEAluAluJr
CAediting_534739chr7_30747424_+SINEAluAluJr
CAediting_534740chr7_30747443_+SINEAluAluJr
CAediting_534741chr7_30747449_+SINEAluAluJr
CAediting_534742chr7_30747450_+SINEAluAluJr
CAediting_534743chr7_30747462_+SINEAluAluJr
CAediting_534744chr7_30747476_+SINEAluAluJr
CAediting_534745chr7_30747479_+SINEAluAluJr
CAediting_534746chr7_30747489_+SINEAluAluJr
CAediting_534747chr7_30747492_+SINEAluAluJr
CAediting_534748chr7_30747536_+SINEAluAluJr
CAediting_534749chr7_30747963_+SINEAluAluJo
CAediting_534750chr7_30747987_+SINEAluAluJo
CAediting_534751chr7_30747999_+SINEAluAluJo
CAediting_534752chr7_30748003_+SINEAluAluJo
CAediting_534753chr7_30748016_+SINEAluAluJo
CAediting_534754chr7_30748031_+SINEAluAluJo
CAediting_534755chr7_30748035_+SINEAluAluJo
CAediting_534756chr7_30748043_+SINEAluAluJo
CAediting_534757chr7_30748051_+SINEAluAluJo
CAediting_534758chr7_30748055_+SINEAluAluJo
CAediting_534759chr7_30748059_+SINEAluAluJo
CAediting_534760chr7_30748089_+SINEAluAluJo
CAediting_534761chr7_30748093_+SINEAluAluJo
CAediting_534762chr7_30748097_+SINEAluAluJo
CAediting_534763chr7_30748098_+SINEAluAluJo
CAediting_534764chr7_30756284_+SINEAluAluYh3
CAediting_534765chr7_30756353_+SINEAluAluYh3
CAediting_534766chr7_30756375_+SINEAluAluYh3
CAediting_534767chr7_30756388_+SINEAluAluYh3
CAediting_534768chr7_30756574_+SINEAluAluYg6
CAediting_534769chr7_30756617_+SINEAluAluYg6
CAediting_534770chr7_30756668_+SINEAluAluYg6
CAediting_534771chr7_30756680_+SINEAluAluYg6
CAediting_534772chr7_30756689_+SINEAluAluYg6
CAediting_534773chr7_30757415_+LTRERVLLTR18B

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RNA A-to-I editing events in the alternative splicing sites for INMT

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000241644.2.INMT.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000241644.2.INMT.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for INMT

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for INMT

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for INMT

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_534772chr7_30756689_+ENSG00000241644.2ENST00000013222hsa-miR-66230756684307566896mer3075666830756690153.00-32.51
CAediting_534772chr7_30756689_+ENSG00000241644.2ENST00000013222hsa-miR-663b30756687307566937mer-m83075667130756694149.00-31.22
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-508-5p30756281307562877mer-m83075626630756288150.00-20.08
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-6512-3p30756279307562857mer-m83075626530756286142.00-19.67
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-6720-5p30756279307562857mer-m83075626230756286155.00-27.44
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-6849-3p30756278307562858mer-1a3075626430756285152.00-20.02
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-766-3p30756280307562867mer-m83075626630756287145.00-20.72
CAediting_534766chr7_30756375_+ENSG00000241644.2ENST00000013222hsa-miR-17-3p30756371307563777mer-m83075635630756378154.00-20.36
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-10400-5p30756383307563908mer-1a3075636930756390153.00-25.27
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-428530756381307563877mer-m83075637030756388146.00-23.02
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-446730756383307563908mer-1a3075636830756390147.00-22.67
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-6770-3p30756384307563907mer-m83075637130756391148.00-18.68
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-6770-3p30756384307563907mer-m83075637130756391148.00-18.68
CAediting_534767chr7_30756388_+ENSG00000241644.2ENST00000013222hsa-miR-6770-3p30756384307563907mer-m83075637130756391148.00-18.68
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548ae-3p30756572307565787mer-m83075655930756579141.00-10.65
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548ae-3p30756572307565787mer-m83075655930756579141.00-10.65
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548ah-3p30756572307565787mer-m83075655730756579143.00-11.29
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548aj-3p30756572307565787mer-m83075655930756579141.00-8.54
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548aj-3p30756572307565787mer-m83075655930756579141.00-8.54
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548am-3p30756572307565787mer-m83075655730756579143.00-10.65
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548aq-3p30756572307565787mer-m83075655830756579141.00-10.72
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548j-3p30756572307565787mer-m83075655930756579141.00-10.65
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548x-3p30756572307565787mer-m83075656030756579141.00-8.54
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-548x-3p30756572307565787mer-m83075656030756579141.00-8.54
CAediting_534768chr7_30756574_+ENSG00000241644.2ENST00000013222hsa-miR-7844-5p30756570307565767mer-m83075655630756577160.00-17.71
CAediting_534773chr7_30757415_+ENSG00000241644.2ENST00000013222hsa-miR-187-3p30757409307574146mer3075739530757415142.00-24.82
CAediting_534773chr7_30757415_+ENSG00000241644.2ENST00000013222hsa-miR-6774-3p30757408307574147mer-m83075739330757415150.00-23.35
CAediting_534770chr7_30756668_+ENSG00000241644.2ENST00000013222hsa-miR-3189-3p30756662307566687mer-m83075664630756669149.00-20.43
CAediting_534770chr7_30756668_+ENSG00000241644.2ENST00000013222hsa-miR-6813-3p30756663307566697mer-m83075665030756670140.00-16.10
CAediting_534771chr7_30756680_+ENSG00000241644.2ENST00000013222hsa-miR-106a-3p30756676307566816mer3075666130756682141.00-21.13

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-1251-5p30756280307562867mer-m83075626230756287142-18.7
CAediting_534764chr7_30756284_+ENSG00000241644.2ENST00000013222hsa-miR-1287-3p30756279307562857mer-m83075626530756286148-21.75
CAediting_534766chr7_30756375_+ENSG00000241644.2ENST00000013222hsa-miR-20b-3p30756371307563777mer-m83075635630756378153-18.18
CAediting_534769chr7_30756617_+ENSG00000241644.2ENST00000013222hsa-miR-3064-5p30756612307566176mer3075659830756618144-24.26
CAediting_534772chr7_30756689_+ENSG00000241644.2ENST00000013222hsa-miR-428430756685307566928mer-1a3075667530756692143-15.61
CAediting_534765chr7_30756353_+ENSG00000241644.2ENST00000013222hsa-miR-447830756350307563567mer-m83075634230756357149-25.05
CAediting_534765chr7_30756353_+ENSG00000241644.2ENST00000013222hsa-miR-4649-3p30756347307563537mer-m83075633430756354140-14.11
CAediting_534769chr7_30756617_+ENSG00000241644.2ENST00000013222hsa-miR-4793-5p30756615307566217mer-m83075659930756622154-20.69
CAediting_534769chr7_30756617_+ENSG00000241644.2ENST00000013222hsa-miR-479430756611307566177mer-m83075659630756618151-21.79
CAediting_534769chr7_30756617_+ENSG00000241644.2ENST00000013222hsa-miR-664a-5p30756611307566177mer-m83075659530756618141-15.05
CAediting_534765chr7_30756353_+ENSG00000241644.2ENST00000013222hsa-miR-6765-5p30756347307563526mer3075633230756353151-27.43
CAediting_534765chr7_30756353_+ENSG00000241644.2ENST00000013222hsa-miR-7160-5p30756348307563547mer-m83075633630756355149-18.69

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000241644.2ENST00000013222hsa-miR-320e30757311307573177mer-1a3075730030757317142-20.83
CAediting_1368054chr19_46709310_-ENSG00000241644.2ENST00000013222hsa-miR-320e30756723307567297mer-m83075671330756730156-19.36
CAediting_1368054chr19_46709310_-ENSG00000241644.2ENST00000013222hsa-miR-320e30756824307568318mer-1a3075681330756831146-14.49
CAediting_86358chr1_109598906_+ENSG00000241644.2ENST00000013222hsa-miR-197-5p30756645307566528mer-1a3075662730756652150-26.21
CAediting_580943chr7_100356700_+ENSG00000241644.2ENST00000013222hsa-miR-6840-3p30756496307565027mer-m83075648230756503144-27.77

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_396018chr5_1062918_-ENSG00000241644.2ENST00000013222hsa-miR-463530756800307568056mer3075678830756806141-16.76
CAediting_414656chr5_72878640_+ENSG00000241644.2ENST00000013222hsa-miR-4804-3p30757447307574537mer-m83075743330757454152-11.81
CAediting_1229413chr17_67471544_+ENSG00000241644.2ENST00000013222hsa-miR-548aa30756136307561438mer-1a3075611930756143148-15.47
CAediting_580943chr7_100356700_+ENSG00000241644.2ENST00000013222hsa-miR-6840-3p30756324307563307mer-m83075631030756331152-25.4

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for INMT

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000013222.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_534764ENST00000013222.5chr7_30756284_+-961.20-962.50-966.00
CAediting_534765ENST00000013222.5chr7_30756353_+-962.60-962.50-966.00
CAediting_534766ENST00000013222.5chr7_30756375_+-963.50-962.50-966.00
CAediting_534767ENST00000013222.5chr7_30756388_+-962.80-962.50-966.00
CAediting_534768ENST00000013222.5chr7_30756574_+-962.50-962.50-966.00
CAediting_534769ENST00000013222.5chr7_30756617_+-964.20-962.50-966.00
CAediting_534770ENST00000013222.5chr7_30756668_+-962.50-962.50-966.00
CAediting_534771ENST00000013222.5chr7_30756680_+-961.50-962.50-966.00
CAediting_534772ENST00000013222.5chr7_30756689_+-962.50-962.50-966.00
CAediting_534773ENST00000013222.5chr7_30757415_+-961.80-962.50-966.00

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Relation with ADAR for INMT

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
THCACAediting_534755chr7_30748035_+..0.03205624862274420.222506833039914..

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Relation with cancer stages for INMT

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for INMT

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for INMT

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for INMT

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
INMTC0023893Liver Cirrhosis, Experimental1CTD_human
INMTC2239176Liver carcinoma1CTD_human