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Editing gene: BVES (CAeditome ID:11149)

Gene summary for BVES

Gene summary

Gene information	Gene symbol	BVES
	Gene ID	11149
	Gene name	blood vessel epicardial substance
	Synonyms	CARICK\|HBVES\|LGMD2X\|LGMDR25\|POP1\|POPDC1
	Cytomap	6q21
	Type of gene	protein-coding
	Description	blood vessel epicardial substancepopeye domain-containing protein 1
	Modification date	20210518
	UniProtAcc	Q8NE79
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
BVES	GO:0005198	Blood vessel epicardial substance	16188940
BVES	GO:0090136	Blood vessel epicardial substance	16188940
BVES	GO:0005886	Blood vessel epicardial substance	0000052
BVES	GO:0005923	Blood vessel epicardial substance	16188940
BVES	GO:0016021	Blood vessel epicardial substance	16188940
BVES	GO:0016328	Blood vessel epicardial substance	16188940
BVES	GO:0030054	Blood vessel epicardial substance	0000052
BVES	GO:0042383	Blood vessel epicardial substance	26642364

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RNA A-to-I events for BVES

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000112276.12

RNA A-to-I editing events in Cancer.

CAediting_496029(105098898, -), CAediting_496030(105098900, -), CAediting_496031(105098903, -), CAediting_496032(105098925, -), CAediting_496033(105098937, -), CAediting_496034(105098954, -), CAediting_496035(105098961, -), CAediting_496036(105098962, -), CAediting_496037(105098967, -), CAediting_496038(105098980, -), CAediting_496039(105098989, -), CAediting_496040(105098993, -), CAediting_496041(105098997, -), CAediting_496042(105099003, -), CAediting_496043(105099009, -), CAediting_496044(105099032, -), CAediting_496045(105099033, -), CAediting_496046(105099034, -), CAediting_496047(105099035, -), CAediting_496048(105099047, -), CAediting_496049(105099052, -), CAediting_496050(105099054, -), CAediting_496051(105099060, -), CAediting_496052(105099062, -), CAediting_496053(105099063, -), CAediting_496054(105099072, -), CAediting_496055(105099075, -), CAediting_496056(105099077, -), CAediting_496057(105099078, -), CAediting_496058(105099083, -), CAediting_496059(105099086, -), CAediting_496060(105099091, -), CAediting_496061(105099109, -), CAediting_496062(105099123, -), CAediting_496063(105099128, -), CAediting_496064(105099131, -), CAediting_496065(105099132, -), CAediting_496066(105099136, -), CAediting_496067(105099138, -), CAediting_496068(105099140, -), CAediting_496069(105099148, -), CAediting_496070(105099150, -), CAediting_496071(105100253, -), CAediting_496072(105100267, -), CAediting_496073(105100328, -), CAediting_496074(105100342, -), CAediting_496075(105100345, -), CAediting_496076(105100361, -), CAediting_496077(105100362, -), CAediting_496078(105100386, -), CAediting_496079(105100388, -), CAediting_496080(105100391, -), CAediting_496081(105100398, -), CAediting_496082(105100401, -), CAediting_496083(105100410, -), CAediting_496084(105100428, -), CAediting_496085(105100447, -), CAediting_496086(105100508, -),

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RNA editing positional annotations for BVES using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_496029	chr6_105098898_-	UTR3
CAediting_496030	chr6_105098900_-	UTR3
CAediting_496031	chr6_105098903_-	UTR3
CAediting_496032	chr6_105098925_-	UTR3
CAediting_496033	chr6_105098937_-	UTR3
CAediting_496034	chr6_105098954_-	UTR3
CAediting_496035	chr6_105098961_-	UTR3
CAediting_496036	chr6_105098962_-	UTR3
CAediting_496037	chr6_105098967_-	UTR3
CAediting_496038	chr6_105098980_-	UTR3
CAediting_496039	chr6_105098989_-	UTR3
CAediting_496040	chr6_105098993_-	UTR3
CAediting_496041	chr6_105098997_-	UTR3
CAediting_496042	chr6_105099003_-	UTR3
CAediting_496043	chr6_105099009_-	UTR3
CAediting_496044	chr6_105099032_-	UTR3
CAediting_496045	chr6_105099033_-	UTR3
CAediting_496046	chr6_105099034_-	UTR3
CAediting_496047	chr6_105099035_-	UTR3
CAediting_496048	chr6_105099047_-	UTR3
CAediting_496049	chr6_105099052_-	UTR3
CAediting_496050	chr6_105099054_-	UTR3
CAediting_496051	chr6_105099060_-	UTR3
CAediting_496052	chr6_105099062_-	UTR3
CAediting_496053	chr6_105099063_-	UTR3
CAediting_496054	chr6_105099072_-	UTR3
CAediting_496055	chr6_105099075_-	UTR3
CAediting_496056	chr6_105099077_-	UTR3
CAediting_496057	chr6_105099078_-	UTR3
CAediting_496058	chr6_105099083_-	UTR3
CAediting_496059	chr6_105099086_-	UTR3
CAediting_496060	chr6_105099091_-	UTR3
CAediting_496061	chr6_105099109_-	UTR3
CAediting_496062	chr6_105099123_-	UTR3
CAediting_496063	chr6_105099128_-	UTR3
CAediting_496064	chr6_105099131_-	UTR3
CAediting_496065	chr6_105099132_-	UTR3
CAediting_496066	chr6_105099136_-	UTR3
CAediting_496067	chr6_105099138_-	UTR3
CAediting_496068	chr6_105099140_-	UTR3
CAediting_496069	chr6_105099148_-	UTR3
CAediting_496070	chr6_105099150_-	UTR3
CAediting_496071	chr6_105100253_-	UTR3
CAediting_496072	chr6_105100267_-	UTR3
CAediting_496073	chr6_105100328_-	UTR3
CAediting_496074	chr6_105100342_-	UTR3
CAediting_496075	chr6_105100345_-	UTR3
CAediting_496076	chr6_105100361_-	UTR3
CAediting_496077	chr6_105100362_-	UTR3
CAediting_496078	chr6_105100386_-	UTR3
CAediting_496079	chr6_105100388_-	UTR3
CAediting_496080	chr6_105100391_-	UTR3
CAediting_496081	chr6_105100398_-	UTR3
CAediting_496082	chr6_105100401_-	UTR3
CAediting_496083	chr6_105100410_-	UTR3
CAediting_496084	chr6_105100428_-	UTR3
CAediting_496085	chr6_105100447_-	UTR3
CAediting_496086	chr6_105100508_-	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_496029	chr6_105098898_-	SINE	Alu	AluJb
CAediting_496030	chr6_105098900_-	SINE	Alu	AluJb
CAediting_496031	chr6_105098903_-	SINE	Alu	AluJb
CAediting_496032	chr6_105098925_-	SINE	Alu	AluJb
CAediting_496033	chr6_105098937_-	SINE	Alu	AluJb
CAediting_496034	chr6_105098954_-	SINE	Alu	AluJb
CAediting_496035	chr6_105098961_-	SINE	Alu	AluJb
CAediting_496036	chr6_105098962_-	SINE	Alu	AluJb
CAediting_496037	chr6_105098967_-	SINE	Alu	AluJb
CAediting_496038	chr6_105098980_-	SINE	Alu	AluJb
CAediting_496039	chr6_105098989_-	SINE	Alu	AluJb
CAediting_496040	chr6_105098993_-	SINE	Alu	AluJb
CAediting_496041	chr6_105098997_-	SINE	Alu	AluJb
CAediting_496042	chr6_105099003_-	SINE	Alu	AluJb
CAediting_496043	chr6_105099009_-	SINE	Alu	AluJb
CAediting_496044	chr6_105099032_-	SINE	Alu	AluJb
CAediting_496045	chr6_105099033_-	SINE	Alu	AluJb
CAediting_496046	chr6_105099034_-	SINE	Alu	AluJb
CAediting_496047	chr6_105099035_-	SINE	Alu	AluJb
CAediting_496048	chr6_105099047_-	SINE	Alu	AluJb
CAediting_496049	chr6_105099052_-	SINE	Alu	AluJb
CAediting_496050	chr6_105099054_-	SINE	Alu	AluJb
CAediting_496051	chr6_105099060_-	SINE	Alu	AluJb
CAediting_496052	chr6_105099062_-	SINE	Alu	AluJb
CAediting_496053	chr6_105099063_-	SINE	Alu	AluJb
CAediting_496054	chr6_105099072_-	SINE	Alu	AluJb
CAediting_496055	chr6_105099075_-	SINE	Alu	AluJb
CAediting_496056	chr6_105099077_-	SINE	Alu	AluJb
CAediting_496057	chr6_105099078_-	SINE	Alu	AluJb
CAediting_496058	chr6_105099083_-	SINE	Alu	AluJb
CAediting_496059	chr6_105099086_-	SINE	Alu	AluJb
CAediting_496060	chr6_105099091_-	SINE	Alu	AluJb
CAediting_496061	chr6_105099109_-	SINE	Alu	AluJb
CAediting_496062	chr6_105099123_-	SINE	Alu	AluJb
CAediting_496063	chr6_105099128_-	SINE	Alu	AluJb
CAediting_496064	chr6_105099131_-	SINE	Alu	AluJb
CAediting_496065	chr6_105099132_-	SINE	Alu	AluJb
CAediting_496066	chr6_105099136_-	SINE	Alu	AluJb
CAediting_496067	chr6_105099138_-	SINE	Alu	AluJb
CAediting_496068	chr6_105099140_-	SINE	Alu	AluJb
CAediting_496069	chr6_105099148_-	SINE	Alu	AluJb
CAediting_496070	chr6_105099150_-	SINE	Alu	AluJb
CAediting_496071	chr6_105100253_-	SINE	Alu	AluY
CAediting_496072	chr6_105100267_-	SINE	Alu	AluY
CAediting_496073	chr6_105100328_-	SINE	Alu	AluY
CAediting_496074	chr6_105100342_-	SINE	Alu	AluY
CAediting_496075	chr6_105100345_-	SINE	Alu	AluY
CAediting_496076	chr6_105100361_-	SINE	Alu	AluY
CAediting_496077	chr6_105100362_-	SINE	Alu	AluY
CAediting_496078	chr6_105100386_-	SINE	Alu	AluY
CAediting_496079	chr6_105100388_-	SINE	Alu	AluY
CAediting_496080	chr6_105100391_-	SINE	Alu	AluY
CAediting_496081	chr6_105100398_-	SINE	Alu	AluY
CAediting_496082	chr6_105100401_-	SINE	Alu	AluY
CAediting_496083	chr6_105100410_-	SINE	Alu	AluY
CAediting_496084	chr6_105100428_-	SINE	Alu	AluY
CAediting_496085	chr6_105100447_-	SINE	Alu	AluY
CAediting_496086	chr6_105100508_-	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for BVES

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000112276.12.BVES.

Correlation between RNA A-to-I editing and PSI for ENSG00000112276.12.BVES.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BVES

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BVES

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for BVES

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-10a-5p	105098896	105098902	7mer-m8	105098895	105098917	147.00	-19.91
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-10b-5p	105098896	105098902	7mer-m8	105098895	105098915	146.00	-18.97
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3620-3p	105098894	105098901	8mer-1a	105098894	105098915	147.00	-22.60
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6784-3p	105098892	105098899	8mer-1a	105098892	105098910	142.00	-24.05
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6862-3p	105098892	105098899	8mer-1a	105098892	105098916	158.00	-23.54
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6862-3p	105098892	105098899	8mer-1a	105098892	105098916	158.00	-23.54
CAediting_496035	chr6_105098961_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3155a	105098957	105098963	7mer-m8	105098956	105098974	146.00	-24.48
CAediting_496035	chr6_105098961_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3155b	105098957	105098963	7mer-m8	105098956	105098971	145.00	-24.11
CAediting_496035	chr6_105098961_-	ENSG00000112276.12	ENST00000314641	hsa-miR-484	105098957	105098963	7mer-m8	105098956	105098979	162.00	-32.73
CAediting_496036	chr6_105098962_-	ENSG00000112276.12	ENST00000314641	hsa-miR-9900	105098957	105098963	7mer-m8	105098956	105098975	153.00	-18.36
CAediting_496040	chr6_105098993_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1207-3p	105098993	105098999	7mer-m8	105098992	105099010	145.00	-13.53
CAediting_496040	chr6_105098993_-	ENSG00000112276.12	ENST00000314641	hsa-miR-646	105098991	105098997	7mer-m8	105098990	105099009	148.00	-20.60
CAediting_496048	chr6_105099047_-	ENSG00000112276.12	ENST00000314641	hsa-miR-483-5p	105099044	105099050	7mer-m8	105099043	105099064	140.00	-15.80
CAediting_496055	chr6_105099075_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3176	105099071	105099077	7mer-m8	105099070	105099088	160.00	-25.04
CAediting_496055	chr6_105099075_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3922-3p	105099071	105099077	7mer-m8	105099070	105099091	158.00	-24.32
CAediting_496056	chr6_105099077_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1200	105099075	105099080	6mer	105099074	105099093	144.00	-18.60
CAediting_496056	chr6_105099077_-	ENSG00000112276.12	ENST00000314641	hsa-miR-12113	105099077	105099083	7mer-m8	105099076	105099094	156.00	-21.83
CAediting_496056	chr6_105099077_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4539	105099077	105099083	7mer-m8	105099076	105099101	155.00	-22.14
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518a-3p	105099119	105099125	7mer-m8	105099118	105099139	145.00	-14.14
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518a-3p	105099119	105099125	7mer-m8	105099118	105099139	145.00	-14.14
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518b	105099119	105099125	7mer-m8	105099118	105099139	145.00	-16.03
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518c-3p	105099119	105099125	7mer-m8	105099118	105099140	150.00	-19.25
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518d-3p	105099119	105099125	7mer-m8	105099118	105099138	145.00	-15.85
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518e-3p	105099120	105099126	7mer-m8	105099119	105099139	140.00	-12.81
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-518f-3p	105099119	105099125	7mer-m8	105099118	105099137	149.00	-13.71
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-526a-3p	105099119	105099125	7mer-m8	105099118	105099140	148.00	-12.71
CAediting_496064	chr6_105099131_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3118	105099126	105099132	7mer-1a	105099126	105099149	147.00	-18.02
CAediting_496064	chr6_105099131_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3118	105099126	105099132	7mer-1a	105099126	105099149	147.00	-18.02
CAediting_496064	chr6_105099131_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3118	105099126	105099132	7mer-1a	105099126	105099149	147.00	-18.02
CAediting_496064	chr6_105099131_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3118	105099126	105099132	7mer-1a	105099126	105099149	147.00	-18.02
CAediting_496069	chr6_105099148_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6774-3p	105099148	105099154	7mer-m8	105099147	105099167	140.00	-23.17
CAediting_496079	chr6_105100388_-	ENSG00000112276.12	ENST00000314641	hsa-miR-17-3p	105100385	105100391	7mer-m8	105100384	105100406	154.00	-20.36
CAediting_496081	chr6_105100398_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4691-3p	105100394	105100400	7mer-m8	105100393	105100420	150.00	-26.36
CAediting_496033	chr6_105098937_-	ENSG00000112276.12	ENST00000314641	hsa-miR-324-3p	105098937	105098943	7mer-m8	105098936	105098958	140.00	-22.56
CAediting_496034	chr6_105098954_-	ENSG00000112276.12	ENST00000314641	hsa-miR-361-3p	105098953	105098959	7mer-m8	105098952	105098978	157.00	-28.79
CAediting_496038	chr6_105098980_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6849-3p	105098980	105098986	7mer-m8	105098979	105099001	141.00	-14.44
CAediting_496049	chr6_105099052_-	ENSG00000112276.12	ENST00000314641	hsa-miR-27a-5p	105099049	105099055	7mer-m8	105099048	105099070	156.00	-20.74
CAediting_496050	chr6_105099054_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3157-5p	105099052	105099059	8mer-1a	105099052	105099072	153.00	-19.45
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-331-3p	105099082	105099088	7mer-m8	105099081	105099101	158.00	-24.25
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4292	105099083	105099089	7mer-m8	105099082	105099099	145.00	-23.25
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6791-5p	105099083	105099089	7mer-m8	105099082	105099103	159.00	-30.50
CAediting_496061	chr6_105099109_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3620-3p	105099105	105099111	7mer-m8	105099104	105099126	152.00	-26.05
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4497	105100265	105100271	7mer-m8	105100264	105100279	149.00	-28.47
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4661-5p	105100360	105100366	7mer-m8	105100359	105100380	145.00	-18.34
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548ae-3p	105100356	105100362	7mer-m8	105100355	105100375	141.00	-6.06
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548ae-3p	105100356	105100362	7mer-m8	105100355	105100375	141.00	-6.06
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548ah-3p	105100356	105100362	7mer-m8	105100355	105100377	143.00	-6.29
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548aj-3p	105100356	105100362	7mer-m8	105100355	105100375	141.00	-6.96
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548aj-3p	105100356	105100362	7mer-m8	105100355	105100375	141.00	-6.96
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548am-3p	105100356	105100362	7mer-m8	105100355	105100377	143.00	-6.06
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548aq-3p	105100356	105100362	7mer-m8	105100355	105100376	141.00	-6.06
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548j-3p	105100356	105100362	7mer-m8	105100355	105100375	141.00	-6.06
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548x-3p	105100356	105100362	7mer-m8	105100355	105100374	141.00	-6.96
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-548x-3p	105100356	105100362	7mer-m8	105100355	105100374	141.00	-6.96
CAediting_496076	chr6_105100361_-	ENSG00000112276.12	ENST00000314641	hsa-miR-7844-5p	105100358	105100364	7mer-m8	105100357	105100378	160.00	-22.05
CAediting_496077	chr6_105100362_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1207-3p	105100361	105100368	8mer-1a	105100361	105100378	142.00	-14.68
CAediting_496077	chr6_105100362_-	ENSG00000112276.12	ENST00000314641	hsa-miR-34a-3p	105100359	105100365	7mer-m8	105100358	105100379	140.00	-8.44
CAediting_496080	chr6_105100391_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4323	105100388	105100395	8mer-1a	105100388	105100405	143.00	-15.35
CAediting_496082	chr6_105100401_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1247-3p	105100400	105100406	7mer-m8	105100399	105100421	160.00	-27.57
CAediting_496084	chr6_105100428_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4634	105100423	105100430	8mer-1a	105100423	105100443	143.00	-24.13
CAediting_496085	chr6_105100447_-	ENSG00000112276.12	ENST00000314641	hsa-miR-17-3p	105100446	105100453	8mer-1a	105100446	105100467	150.00	-16.69
CAediting_496085	chr6_105100447_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4294	105100441	105100448	8mer-1a	105100441	105100457	152.00	-19.81
CAediting_496086	chr6_105100508_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4733-5p	105100505	105100511	7mer-m8	105100504	105100525	143.00	-8.30

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_496066	chr6_105099136_-	ENSG00000112276.12	ENST00000314641	hsa-miR-10226	105099134	105099140	7mer-m8	105099133	105099155	145	-13.46
CAediting_496067	chr6_105099138_-	ENSG00000112276.12	ENST00000314641	hsa-miR-10226	105099134	105099140	7mer-m8	105099133	105099155	145	-13.46
CAediting_496039	chr6_105098989_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1237-3p	105098984	105098990	7mer-m8	105098983	105099003	140	-11.36
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1343-3p	105099083	105099089	7mer-m8	105099082	105099104	142	-24.99
CAediting_496059	chr6_105099086_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1343-3p	105099083	105099089	7mer-m8	105099082	105099104	142	-24.99
CAediting_496049	chr6_105099052_-	ENSG00000112276.12	ENST00000314641	hsa-miR-193b-5p	105099047	105099054	8mer-1a	105099047	105099068	142	-13.83
CAediting_496078	chr6_105100386_-	ENSG00000112276.12	ENST00000314641	hsa-miR-20b-3p	105100385	105100391	7mer-m8	105100384	105100406	153	-18.18
CAediting_496079	chr6_105100388_-	ENSG00000112276.12	ENST00000314641	hsa-miR-20b-3p	105100385	105100391	7mer-m8	105100384	105100406	153	-18.18
CAediting_496073	chr6_105100328_-	ENSG00000112276.12	ENST00000314641	hsa-miR-216a-3p	105100323	105100329	7mer-m8	105100322	105100343	142	-18.34
CAediting_496033	chr6_105098937_-	ENSG00000112276.12	ENST00000314641	hsa-miR-218-5p	105098932	105098937	6mer	105098931	105098951	145	-16.93
CAediting_496033	chr6_105098937_-	ENSG00000112276.12	ENST00000314641	hsa-miR-218-5p	105098932	105098937	6mer	105098931	105098951	145	-16.93
CAediting_496060	chr6_105099091_-	ENSG00000112276.12	ENST00000314641	hsa-miR-27a-5p	105099086	105099093	8mer-1a	105099086	105099107	143	-13.41
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-302a-3p	105099120	105099126	7mer-m8	105099119	105099146	148	-14.28
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-302b-3p	105099120	105099126	7mer-m8	105099119	105099146	152	-13.37
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-302c-3p	105099120	105099126	7mer-m8	105099119	105099146	152	-14.36
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-302e	105099120	105099126	7mer-m8	105099119	105099135	141	-8.62
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-30b-3p	105100267	105100273	7mer-m8	105100266	105100287	151	-20.56
CAediting_496048	chr6_105099047_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3170	105099047	105099053	7mer-m8	105099046	105099065	144	-12.99
CAediting_496049	chr6_105099052_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3170	105099047	105099053	7mer-m8	105099046	105099065	144	-12.99
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-326	105100264	105100270	7mer-m8	105100263	105100282	140	-14.14
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-330-5p	105100264	105100270	7mer-m8	105100263	105100284	140	-21.34
CAediting_496054	chr6_105099072_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3663-5p	105099071	105099077	7mer-m8	105099070	105099086	141	-19.69
CAediting_496055	chr6_105099075_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3663-5p	105099071	105099077	7mer-m8	105099070	105099086	141	-19.69
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3664-5p	105098896	105098902	7mer-m8	105098895	105098917	143	-15.23
CAediting_496030	chr6_105098900_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3664-5p	105098896	105098902	7mer-m8	105098895	105098917	143	-15.23
CAediting_496030	chr6_105098900_-	ENSG00000112276.12	ENST00000314641	hsa-miR-367-5p	105098898	105098905	8mer-1a	105098898	105098919	143	-12.17
CAediting_496031	chr6_105098903_-	ENSG00000112276.12	ENST00000314641	hsa-miR-367-5p	105098898	105098905	8mer-1a	105098898	105098919	143	-12.17
CAediting_496074	chr6_105100342_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3675-3p	105100337	105100343	7mer-m8	105100336	105100357	145	-12.58
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3689a-3p	105100267	105100273	7mer-m8	105100266	105100287	141	-24.02
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3689b-3p	105100267	105100273	7mer-m8	105100266	105100287	141	-24.24
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-3689c	105100267	105100273	7mer-m8	105100266	105100287	141	-24.24
CAediting_496086	chr6_105100508_-	ENSG00000112276.12	ENST00000314641	hsa-miR-371b-5p	105100506	105100513	8mer-1a	105100506	105100527	148	-7.79
CAediting_496086	chr6_105100508_-	ENSG00000112276.12	ENST00000314641	hsa-miR-373-5p	105100506	105100513	8mer-1a	105100506	105100527	144	-8.35
CAediting_496069	chr6_105099148_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4252	105099143	105099149	7mer-m8	105099142	105099161	153	-20.13
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4314	105100265	105100271	7mer-m8	105100264	105100281	140	-18.8
CAediting_496083	chr6_105100410_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4478	105100406	105100412	7mer-m8	105100405	105100420	149	-25.05
CAediting_496060	chr6_105099091_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4503	105099091	105099097	7mer-m8	105099090	105099111	141	-11.99
CAediting_496083	chr6_105100410_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4649-3p	105100409	105100415	7mer-m8	105100408	105100428	140	-14.11
CAediting_496065	chr6_105099132_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4666a-5p	105099131	105099138	8mer-1a	105099131	105099151	144	-10.07
CAediting_496066	chr6_105099136_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4666a-5p	105099131	105099138	8mer-1a	105099131	105099151	144	-10.07
CAediting_496063	chr6_105099128_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4679	105099125	105099131	7mer-m8	105099124	105099145	140	-11.17
CAediting_496063	chr6_105099128_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4679	105099125	105099131	7mer-m8	105099124	105099145	140	-11.17
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4680-5p	105099078	105099084	7mer-1a	105099078	105099098	144	-14.96
CAediting_496051	chr6_105099060_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4716-5p	105099057	105099063	7mer-m8	105099056	105099077	148	-13.48
CAediting_496052	chr6_105099062_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4716-5p	105099057	105099063	7mer-m8	105099056	105099077	148	-13.48
CAediting_496060	chr6_105099091_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4720-3p	105099089	105099095	7mer-m8	105099088	105099107	150	-13.49
CAediting_496041	chr6_105098997_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4731-5p	105098995	105099000	6mer	105098994	105099014	142	-21.64
CAediting_496044	chr6_105099032_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4735-5p	105099028	105099034	7mer-m8	105099027	105099048	140	-4.34
CAediting_496045	chr6_105099033_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4735-5p	105099028	105099034	7mer-m8	105099027	105099048	140	-4.34
CAediting_496083	chr6_105100410_-	ENSG00000112276.12	ENST00000314641	hsa-miR-485-5p	105100405	105100411	7mer-m8	105100404	105100425	149	-16.26
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-514a-5p	105100263	105100269	7mer-m8	105100262	105100282	154	-19.44
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-514a-5p	105100263	105100269	7mer-m8	105100262	105100282	154	-19.44
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-514a-5p	105100263	105100269	7mer-m8	105100262	105100282	154	-19.44
CAediting_496086	chr6_105100508_-	ENSG00000112276.12	ENST00000314641	hsa-miR-514b-5p	105100506	105100511	6mer	105100505	105100526	146	-13.43
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-519d-3p	105099119	105099125	7mer-m8	105099118	105099138	141	-13.34
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520a-3p	105099120	105099126	7mer-m8	105099119	105099140	140	-11.12
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520b-3p	105099120	105099126	7mer-m8	105099119	105099140	143	-11.71
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520c-3p	105099120	105099126	7mer-m8	105099119	105099141	143	-11.81
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520d-3p	105099120	105099126	7mer-m8	105099119	105099140	143	-12.38
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520e-3p	105099120	105099126	7mer-m8	105099119	105099141	141	-11.71
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520g-3p	105099118	105099124	7mer-m8	105099117	105099140	150	-17.04
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-520h	105099118	105099124	7mer-m8	105099117	105099138	150	-12.51
CAediting_496062	chr6_105099123_-	ENSG00000112276.12	ENST00000314641	hsa-miR-526b-3p	105099119	105099125	7mer-m8	105099118	105099140	148	-10.99
CAediting_496078	chr6_105100386_-	ENSG00000112276.12	ENST00000314641	hsa-miR-550a-3-5p	105100381	105100387	7mer-m8	105100380	105100399	143	-16.67
CAediting_496078	chr6_105100386_-	ENSG00000112276.12	ENST00000314641	hsa-miR-550a-5p	105100381	105100387	7mer-m8	105100380	105100402	143	-18.93
CAediting_496078	chr6_105100386_-	ENSG00000112276.12	ENST00000314641	hsa-miR-550a-5p	105100381	105100387	7mer-m8	105100380	105100402	143	-18.93
CAediting_496080	chr6_105100391_-	ENSG00000112276.12	ENST00000314641	hsa-miR-5588-3p	105100388	105100395	8mer-1a	105100388	105100407	148	-14.95
CAediting_496081	chr6_105100398_-	ENSG00000112276.12	ENST00000314641	hsa-miR-5690	105100394	105100400	7mer-m8	105100393	105100413	145	-16.75
CAediting_496054	chr6_105099072_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6131	105099070	105099076	7mer-m8	105099069	105099087	140	-17.94
CAediting_496055	chr6_105099075_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6131	105099070	105099076	7mer-m8	105099069	105099087	140	-17.94
CAediting_496086	chr6_105100508_-	ENSG00000112276.12	ENST00000314641	hsa-miR-616-5p	105100506	105100513	8mer-1a	105100506	105100527	140	-5.71
CAediting_496049	chr6_105099052_-	ENSG00000112276.12	ENST00000314641	hsa-miR-629-5p	105099049	105099055	7mer-m8	105099048	105099067	141	-11.5
CAediting_496050	chr6_105099054_-	ENSG00000112276.12	ENST00000314641	hsa-miR-629-5p	105099049	105099055	7mer-m8	105099048	105099067	141	-11.5
CAediting_496052	chr6_105099062_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6501-5p	105099060	105099066	7mer-1a	105099060	105099081	144	-25.24
CAediting_496053	chr6_105099063_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6501-5p	105099060	105099066	7mer-1a	105099060	105099081	144	-25.24
CAediting_496085	chr6_105100447_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6516-5p	105100446	105100453	8mer-1a	105100446	105100465	149	-16.29
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6779-5p	105100267	105100273	7mer-m8	105100266	105100289	147	-29.13
CAediting_496072	chr6_105100267_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6780a-5p	105100267	105100273	7mer-m8	105100266	105100289	152	-21.91
CAediting_496058	chr6_105099083_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6783-3p	105099083	105099089	7mer-m8	105099082	105099103	155	-21.17
CAediting_496059	chr6_105099086_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6783-3p	105099083	105099089	7mer-m8	105099082	105099103	155	-21.17
CAediting_496029	chr6_105098898_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6794-3p	105098894	105098900	7mer-m8	105098893	105098912	143	-18.56
CAediting_496068	chr6_105099140_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6807-5p	105099140	105099146	7mer-m8	105099139	105099160	147	-19.08
CAediting_496066	chr6_105099136_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6818-5p	105099136	105099142	7mer-m8	105099135	105099157	155	-17.71
CAediting_496067	chr6_105099138_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6818-5p	105099136	105099142	7mer-m8	105099135	105099157	155	-17.71
CAediting_496068	chr6_105099140_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6818-5p	105099136	105099142	7mer-m8	105099135	105099157	155	-17.71
CAediting_496048	chr6_105099047_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6855-5p	105099047	105099053	7mer-m8	105099046	105099070	151	-19.97
CAediting_496049	chr6_105099052_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6855-5p	105099047	105099053	7mer-m8	105099046	105099070	151	-19.97
CAediting_496039	chr6_105098989_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6869-5p	105098989	105098995	7mer-m8	105098988	105099011	152	-19.66
CAediting_496040	chr6_105098993_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6869-5p	105098989	105098995	7mer-m8	105098988	105099011	152	-19.66
CAediting_496048	chr6_105099047_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6890-5p	105099046	105099052	7mer-m8	105099045	105099065	150	-16.16
CAediting_496083	chr6_105100410_-	ENSG00000112276.12	ENST00000314641	hsa-miR-7160-5p	105100408	105100414	7mer-m8	105100407	105100426	153	-20.58
CAediting_496051	chr6_105099060_-	ENSG00000112276.12	ENST00000314641	hsa-miR-744-3p	105099060	105099066	7mer-m8	105099059	105099080	140	-9.95
CAediting_496052	chr6_105099062_-	ENSG00000112276.12	ENST00000314641	hsa-miR-744-3p	105099060	105099066	7mer-m8	105099059	105099080	140	-9.95
CAediting_496053	chr6_105099063_-	ENSG00000112276.12	ENST00000314641	hsa-miR-744-3p	105099060	105099066	7mer-m8	105099059	105099080	140	-9.95
CAediting_496030	chr6_105098900_-	ENSG00000112276.12	ENST00000314641	hsa-miR-744-3p	105098900	105098906	7mer-m8	105098899	105098920	140	-14.79
CAediting_496031	chr6_105098903_-	ENSG00000112276.12	ENST00000314641	hsa-miR-744-3p	105098900	105098906	7mer-m8	105098899	105098920	140	-14.79
CAediting_496080	chr6_105100391_-	ENSG00000112276.12	ENST00000314641	hsa-miR-7977	105100391	105100397	7mer-m8	105100390	105100407	142	-13.37
CAediting_496063	chr6_105099128_-	ENSG00000112276.12	ENST00000314641	hsa-miR-8070	105099126	105099132	7mer-m8	105099125	105099147	151	-14.62
CAediting_496064	chr6_105099131_-	ENSG00000112276.12	ENST00000314641	hsa-miR-8070	105099126	105099132	7mer-m8	105099125	105099147	151	-14.62
CAediting_496059	chr6_105099086_-	ENSG00000112276.12	ENST00000314641	hsa-miR-939-3p	105099083	105099090	8mer-1a	105099083	105099105	150	-22.19

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105097318	105097324	7mer-m8	105097317	105097341	140	-10.48
CAediting_1229413	chr17_67471544_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105097287	105097293	7mer-m8	105097286	105097310	149	-8.43
CAediting_1229415	chr17_67471547_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105101009	105101015	7mer-m8	105101008	105101033	147	-10.36
CAediting_1351755	chr19_40282625_-	ENSG00000112276.12	ENST00000314641	hsa-miR-641	105098420	105098426	7mer-1a	105098420	105098442	143	-16.3
CAediting_228905	chr2_188297554_+	ENSG00000112276.12	ENST00000314641	hsa-miR-561-3p	105100083	105100089	7mer-m8	105100082	105100102	148	-6.54
CAediting_396018	chr5_1062918_-	ENSG00000112276.12	ENST00000314641	hsa-miR-4635	105098397	105098404	8mer-1a	105098397	105098417	156	-16.97
CAediting_524911	chr7_5495852_-	ENSG00000112276.12	ENST00000314641	hsa-miR-589-3p	105100032	105100039	8mer-1a	105100032	105100055	140	-14.74
CAediting_573001	chr7_92204086_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1285-5p	105098350	105098356	7mer-m8	105098349	105098366	155	-19.71
CAediting_1229415	chr17_67471547_+	ENSG00000112276.12	ENST00000336775	hsa-miR-548aa	105101009	105101015	7mer-m8	105101008	105101033	147	-10.36
CAediting_1229415	chr17_67471547_+	ENSG00000112276.12	ENST00000446408	hsa-miR-548aa	105101009	105101015	7mer-m8	105101008	105101033	147	-10.36
CAediting_468389	chr6_31355314_-	ENSG00000112276.12	ENST00000314641	hsa-miR-6891-5p	105097276	105097282	7mer-m8	105097275	105097297	144	-23.13

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000112276.12	ENST00000314641	hsa-miR-1304-3p	105099665	105099671	7mer-m8	105099664	105099687	155	-20.77
CAediting_1306324	chr19_13836464_-	ENSG00000112276.12	ENST00000314641	hsa-miR-27a-3p	105098689	105098695	7mer-m8	105098688	105098708	143	-12.85
CAediting_1229413	chr17_67471544_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105097724	105097730	7mer-m8	105097723	105097747	146	-5.51
CAediting_1229415	chr17_67471547_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105097724	105097730	7mer-m8	105097723	105097747	146	-5.51
CAediting_1229414	chr17_67471546_+	ENSG00000112276.12	ENST00000314641	hsa-miR-548aa	105097724	105097730	7mer-m8	105097723	105097747	146	-5.51

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BVES

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000314641.8	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_496029	ENST00000314641.8	chr6_105098898_-	-1744.30	-1745.20	-1774.30
CAediting_496030	ENST00000314641.8	chr6_105098900_-	-1744.50	-1745.20	-1774.30
CAediting_496031	ENST00000314641.8	chr6_105098903_-	-1751.20	-1745.20	-1774.30
CAediting_496032	ENST00000314641.8	chr6_105098925_-	-1748.80	-1745.20	-1774.30
CAediting_496033	ENST00000314641.8	chr6_105098937_-	-1744.30	-1745.20	-1774.30
CAediting_496034	ENST00000314641.8	chr6_105098954_-	-1744.30	-1745.20	-1774.30
CAediting_496035	ENST00000314641.8	chr6_105098961_-	-1744.90	-1745.20	-1774.30
CAediting_496036	ENST00000314641.8	chr6_105098962_-	-1744.70	-1745.20	-1774.30
CAediting_496037	ENST00000314641.8	chr6_105098967_-	-1748.80	-1745.20	-1774.30
CAediting_496038	ENST00000314641.8	chr6_105098980_-	-1744.30	-1745.20	-1774.30
CAediting_496039	ENST00000314641.8	chr6_105098989_-	-1751.40	-1745.20	-1774.30
CAediting_496040	ENST00000314641.8	chr6_105098993_-	-1745.20	-1745.20	-1774.30
CAediting_496041	ENST00000314641.8	chr6_105098997_-	-1744.50	-1745.20	-1774.30
CAediting_496042	ENST00000314641.8	chr6_105099003_-	-1744.90	-1745.20	-1774.30
CAediting_496043	ENST00000314641.8	chr6_105099009_-	-1751.40	-1745.20	-1774.30
CAediting_496044	ENST00000314641.8	chr6_105099032_-	-1745.20	-1745.20	-1774.30
CAediting_496045	ENST00000314641.8	chr6_105099033_-	-1745.30	-1745.20	-1774.30
CAediting_496046	ENST00000314641.8	chr6_105099034_-	-1745.30	-1745.20	-1774.30
CAediting_496047	ENST00000314641.8	chr6_105099035_-	-1745.30	-1745.20	-1774.30
CAediting_496048	ENST00000314641.8	chr6_105099047_-	-1744.80	-1745.20	-1774.30
CAediting_496049	ENST00000314641.8	chr6_105099052_-	-1745.20	-1745.20	-1774.30
CAediting_496050	ENST00000314641.8	chr6_105099054_-	-1745.30	-1745.20	-1774.30
CAediting_496051	ENST00000314641.8	chr6_105099060_-	-1741.80	-1745.20	-1774.30
CAediting_496052	ENST00000314641.8	chr6_105099062_-	-1745.20	-1745.20	-1774.30
CAediting_496053	ENST00000314641.8	chr6_105099063_-	-1745.60	-1745.20	-1774.30
CAediting_496054	ENST00000314641.8	chr6_105099072_-	-1744.20	-1745.20	-1774.30
CAediting_496055	ENST00000314641.8	chr6_105099075_-	-1744.60	-1745.20	-1774.30
CAediting_496056	ENST00000314641.8	chr6_105099077_-	-1745.10	-1745.20	-1774.30
CAediting_496057	ENST00000314641.8	chr6_105099078_-	-1751.20	-1745.20	-1774.30
CAediting_496058	ENST00000314641.8	chr6_105099083_-	-1744.30	-1745.20	-1774.30
CAediting_496059	ENST00000314641.8	chr6_105099086_-	-1744.50	-1745.20	-1774.30
CAediting_496060	ENST00000314641.8	chr6_105099091_-	-1747.10	-1745.20	-1774.30
CAediting_496061	ENST00000314641.8	chr6_105099109_-	-1744.90	-1745.20	-1774.30
CAediting_496062	ENST00000314641.8	chr6_105099123_-	-1744.80	-1745.20	-1774.30
CAediting_496063	ENST00000314641.8	chr6_105099128_-	-1747.90	-1745.20	-1774.30
CAediting_496064	ENST00000314641.8	chr6_105099131_-	-1745.20	-1745.20	-1774.30
CAediting_496065	ENST00000314641.8	chr6_105099132_-	-1745.30	-1745.20	-1774.30
CAediting_496066	ENST00000314641.8	chr6_105099136_-	-1747.80	-1745.20	-1774.30
CAediting_496067	ENST00000314641.8	chr6_105099138_-	-1750.60	-1745.20	-1774.30
CAediting_496068	ENST00000314641.8	chr6_105099140_-	-1744.80	-1745.20	-1774.30
CAediting_496069	ENST00000314641.8	chr6_105099148_-	-1750.40	-1745.20	-1774.30
CAediting_496070	ENST00000314641.8	chr6_105099150_-	-1749.10	-1745.20	-1774.30
CAediting_496071	ENST00000314641.8	chr6_105100253_-	-1745.20	-1745.20	-1774.30
CAediting_496072	ENST00000314641.8	chr6_105100267_-	-1744.40	-1745.20	-1774.30
CAediting_496073	ENST00000314641.8	chr6_105100328_-	-1749.00	-1745.20	-1774.30
CAediting_496074	ENST00000314641.8	chr6_105100342_-	-1744.90	-1745.20	-1774.30
CAediting_496075	ENST00000314641.8	chr6_105100345_-	-1745.20	-1745.20	-1774.30
CAediting_496076	ENST00000314641.8	chr6_105100361_-	-1745.20	-1745.20	-1774.30
CAediting_496077	ENST00000314641.8	chr6_105100362_-	-1745.30	-1745.20	-1774.30
CAediting_496078	ENST00000314641.8	chr6_105100386_-	-1744.50	-1745.20	-1774.30
CAediting_496079	ENST00000314641.8	chr6_105100388_-	-1745.20	-1745.20	-1774.30
CAediting_496080	ENST00000314641.8	chr6_105100391_-	-1744.60	-1745.20	-1774.30
CAediting_496081	ENST00000314641.8	chr6_105100398_-	-1744.90	-1745.20	-1774.30
CAediting_496082	ENST00000314641.8	chr6_105100401_-	-1744.30	-1745.20	-1774.30
CAediting_496083	ENST00000314641.8	chr6_105100410_-	-1744.50	-1745.20	-1774.30
CAediting_496084	ENST00000314641.8	chr6_105100428_-	-1744.60	-1745.20	-1774.30
CAediting_496085	ENST00000314641.8	chr6_105100447_-	-1745.20	-1745.20	-1774.30
CAediting_496086	ENST00000314641.8	chr6_105100508_-	-1744.20	-1745.20	-1774.30

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Relation with ADAR for BVES

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_496039	chr6_105098989_-	0.0340440359449303	0.255578570932467	.	.	.	.
GBM	CAediting_496039	chr6_105098989_-	0.0434069410717792	0.219644204732211	.	.	.	.
SKCM	CAediting_496039	chr6_105098989_-	.	.	0.0413346213053672	0.155745669754321	.	.
LGG	CAediting_496042	chr6_105099003_-	.	.	.	.	0.0124840037603678	0.278145188870597
GBM	CAediting_496043	chr6_105099009_-	0.0217086909934424	0.275988209667748	.	.	.	.
LGG	CAediting_496062	chr6_105099123_-	0.00509002969856544	0.366169524820162	.	.	.	.
LGG	CAediting_496064	chr6_105099131_-	0.018370769721657	0.241535544378466	.	.	.	.
BRCA	CAediting_496064	chr6_105099131_-	0.000405026194812503	0.388369055282684	.	.	.	.
HNSC	CAediting_496064	chr6_105099131_-	0.000389687731846886	0.409589679272731	.	.	.	.
SKCM	CAediting_496064	chr6_105099131_-	0.0186174032264115	0.210222404693858	.	.	.	.
LGG	CAediting_496065	chr6_105099132_-	0.0202132213789428	0.301718564897759	.	.	.	.
SKCM	CAediting_496065	chr6_105099132_-	0.0341792072697194	0.261148924019259	.	.	.	.
SARC	CAediting_496065	chr6_105099132_-	0.01628266791864	0.282295229824401	.	.	0.00361384176747098	0.338681251578906
LGG	CAediting_496067	chr6_105099138_-	1.15332480298467e-05	0.289683122993725	.	.	.	.
BRCA	CAediting_496067	chr6_105099138_-	0.00424878862590891	0.2385625649898	.	.	.	.
LUSC	CAediting_496067	chr6_105099138_-	3.06937268231846e-05	0.405898886296272	.	.	0.0143652118554703	0.24537567000546
GBM	CAediting_496067	chr6_105099138_-	0.0406100962565589	0.225260055519492	.	.	.	.
HNSC	CAediting_496067	chr6_105099138_-	0.000639494893906427	0.263887486403673	.	.	.	.
SKCM	CAediting_496067	chr6_105099138_-	2.99120460675589e-10	0.399260365800602	.	.	.	.
SARC	CAediting_496067	chr6_105099138_-	0.00246073241911647	0.232843127702359	.	.	.	.
TGCT	CAediting_496067	chr6_105099138_-	0.0346427613724133	0.290806205794312	.	.	.	.
SARC	CAediting_496069	chr6_105099148_-	0.0071840975601281	0.349382857478625	.	.	.	.

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Relation with cancer stages for BVES

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_496039	chr6_105098989_-	0.00994901065307897	0.310566682217629
HNSC	clinical_stage	CAediting_496039	chr6_105098989_-	0.0344916807163231	0.2171987611955
SKCM	pathologic_stage	CAediting_496062	chr6_105099123_-	0.0365568517992604	-0.225827138640933
STAD	pathologic_stage	CAediting_496064	chr6_105099131_-	0.0279166575832647	0.311019183078797

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Relation with survival for BVES

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for BVES

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for BVES

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
BVES	C0003811	Cardiac Arrhythmia	1	GENOMICS_ENGLAND
BVES	C0686353	Muscular Dystrophies, Limb-Girdle	1	GENOMICS_ENGLAND
BVES	C4225199	CARDIAC ARRHYTHMIA WITH INCREASED SERUM CREATINE KINASE	1	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene