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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CHEK1 (CAeditome ID:1111) |
Gene summary for CHEK1 |
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Gene information | Gene symbol | CHEK1 | Gene ID | 1111 |
Gene name | checkpoint kinase 1 | |
Synonyms | CHK1 | |
Cytomap | 11q24.2 | |
Type of gene | protein-coding | |
Description | serine/threonine-protein kinase Chk1CHK1 checkpoint homologCheckpoint, S. pombe, homolog of, 1Chk1-Scell cycle checkpoint kinase | |
Modification date | 20210531 | |
UniProtAcc | O14757 | |
Context | - 34058013(Genetic variants of CHEK1, PRIM2 and CDK6 in the mitotic phase-related pathway are associated with nonsmall cell lung cancer survival) |
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Gene | GO ID | GO term | PubMed ID |
CHEK1 | GO:0000781 | Serine/threonine-protein kinase Chk1 | 15149599 |
CHEK1 | GO:0004674 | Serine/threonine-protein kinase Chk1 | 16963448 |
CHEK1 | GO:0035402 | Serine/threonine-protein kinase Chk1 | 18243098 |
CHEK1 | GO:0000077 | Serine/threonine-protein kinase Chk1 | 16963448 |
CHEK1 | GO:0006468 | Serine/threonine-protein kinase Chk1 | 33108758 |
CHEK1 | GO:0006915 | Serine/threonine-protein kinase Chk1 | 23028632 |
CHEK1 | GO:0006975 | Serine/threonine-protein kinase Chk1 | 16963448 |
CHEK1 | GO:0010569 | Serine/threonine-protein kinase Chk1 | 15665856 |
CHEK1 | GO:0018107 | Serine/threonine-protein kinase Chk1 | 15665856 |
CHEK1 | GO:0045787 | Serine/threonine-protein kinase Chk1 | 26296656 |
CHEK1 | GO:0045839 | Serine/threonine-protein kinase Chk1 | 15311285 |
CHEK1 | GO:0046602 | Serine/threonine-protein kinase Chk1 | 15311285 |
CHEK1 | GO:0000794 | Serine/threonine-protein kinase Chk1 | 9382850 |
CHEK1 | GO:0005634 | Serine/threonine-protein kinase Chk1 | 15311285 |
CHEK1 | GO:0005634 | Serine/threonine-protein kinase Chk1 | 20932473 |
CHEK1 | GO:0005634 | Serine/threonine-protein kinase Chk1 | 26296656 |
CHEK1 | GO:0005654 | Serine/threonine-protein kinase Chk1 | 0000052 |
CHEK1 | GO:0005737 | Serine/threonine-protein kinase Chk1 | 26296656 |
CHEK1 | GO:0005813 | Serine/threonine-protein kinase Chk1 | 15311285 |
CHEK1 | GO:0043231 | Serine/threonine-protein kinase Chk1 | 0000052 |
CHEK1 | GO:0032991 | Serine/threonine-protein kinase Chk1 | 26296656 |
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RNA A-to-I events for CHEK1 |
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CAediting_858829(125631666, +), CAediting_858830(125640709, +), CAediting_858831(125640735, +), CAediting_858832(125640811, +), CAediting_858833(125656230, +), CAediting_858834(125656236, +), CAediting_858835(125656244, +), CAediting_858836(125656247, +), CAediting_858837(125656253, +), CAediting_858838(125656255, +), CAediting_858839(125656257, +), CAediting_858840(125656263, +), CAediting_858841(125656271, +), CAediting_858842(125656278, +), CAediting_858843(125656279, +), CAediting_858844(125656296, +), CAediting_858845(125656300, +), CAediting_858846(125656303, +), CAediting_858847(125656308, +), CAediting_858848(125656335, +), CAediting_858849(125656338, +), CAediting_858850(125656339, +), CAediting_858851(125658119, +), CAediting_858852(125658130, +), CAediting_858853(125658133, +), CAediting_858854(125658134, +), CAediting_858855(125658168, +), CAediting_858856(125658172, +), CAediting_858857(125658194, +), CAediting_858858(125658195, +), CAediting_858859(125658754, +), CAediting_858860(125658759, +), CAediting_858861(125658775, +), CAediting_858862(125658790, +), CAediting_858863(125670981, +), CAediting_858864(125671032, +), CAediting_858865(125671033, +), CAediting_858866(125671090, +), |
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RNA editing positional annotations for CHEK1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_858829 | chr11_125631666_+ | intronic |
CAediting_858830 | chr11_125640709_+ | intronic |
CAediting_858831 | chr11_125640735_+ | intronic |
CAediting_858832 | chr11_125640811_+ | intronic |
CAediting_858833 | chr11_125656230_+ | UTR3 |
CAediting_858834 | chr11_125656236_+ | UTR3 |
CAediting_858835 | chr11_125656244_+ | UTR3 |
CAediting_858836 | chr11_125656247_+ | UTR3 |
CAediting_858837 | chr11_125656253_+ | UTR3 |
CAediting_858838 | chr11_125656255_+ | UTR3 |
CAediting_858839 | chr11_125656257_+ | UTR3 |
CAediting_858840 | chr11_125656263_+ | UTR3 |
CAediting_858841 | chr11_125656271_+ | UTR3 |
CAediting_858842 | chr11_125656278_+ | UTR3 |
CAediting_858843 | chr11_125656279_+ | UTR3 |
CAediting_858844 | chr11_125656296_+ | UTR3 |
CAediting_858845 | chr11_125656300_+ | UTR3 |
CAediting_858846 | chr11_125656303_+ | UTR3 |
CAediting_858847 | chr11_125656308_+ | UTR3 |
CAediting_858848 | chr11_125656335_+ | UTR3 |
CAediting_858849 | chr11_125656338_+ | UTR3 |
CAediting_858850 | chr11_125656339_+ | UTR3 |
CAediting_858851 | chr11_125658119_+ | intronic |
CAediting_858852 | chr11_125658130_+ | intronic |
CAediting_858853 | chr11_125658133_+ | intronic |
CAediting_858854 | chr11_125658134_+ | intronic |
CAediting_858855 | chr11_125658168_+ | intronic |
CAediting_858856 | chr11_125658172_+ | intronic |
CAediting_858857 | chr11_125658194_+ | intronic |
CAediting_858858 | chr11_125658195_+ | intronic |
CAediting_858859 | chr11_125658754_+ | intronic |
CAediting_858860 | chr11_125658759_+ | intronic |
CAediting_858861 | chr11_125658775_+ | intronic |
CAediting_858862 | chr11_125658790_+ | intronic |
CAediting_858863 | chr11_125670981_+ | intronic |
CAediting_858864 | chr11_125671032_+ | intronic |
CAediting_858865 | chr11_125671033_+ | intronic |
CAediting_858866 | chr11_125671090_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_858829 | chr11_125631666_+ | SINE | Alu | AluJo |
CAediting_858830 | chr11_125640709_+ | SINE | Alu | AluJb |
CAediting_858831 | chr11_125640735_+ | SINE | Alu | AluJb |
CAediting_858832 | chr11_125640811_+ | SINE | Alu | AluJb |
CAediting_858833 | chr11_125656230_+ | SINE | Alu | AluJo |
CAediting_858834 | chr11_125656236_+ | SINE | Alu | AluJo |
CAediting_858835 | chr11_125656244_+ | SINE | Alu | AluJo |
CAediting_858836 | chr11_125656247_+ | SINE | Alu | AluJo |
CAediting_858837 | chr11_125656253_+ | SINE | Alu | AluJo |
CAediting_858838 | chr11_125656255_+ | SINE | Alu | AluJo |
CAediting_858839 | chr11_125656257_+ | SINE | Alu | AluJo |
CAediting_858840 | chr11_125656263_+ | SINE | Alu | AluJo |
CAediting_858841 | chr11_125656271_+ | SINE | Alu | AluJo |
CAediting_858842 | chr11_125656278_+ | SINE | Alu | AluJo |
CAediting_858843 | chr11_125656279_+ | SINE | Alu | AluJo |
CAediting_858844 | chr11_125656296_+ | SINE | Alu | AluJo |
CAediting_858845 | chr11_125656300_+ | SINE | Alu | AluJo |
CAediting_858846 | chr11_125656303_+ | SINE | Alu | AluJo |
CAediting_858847 | chr11_125656308_+ | SINE | Alu | AluJo |
CAediting_858848 | chr11_125656335_+ | SINE | Alu | AluJo |
CAediting_858849 | chr11_125656338_+ | SINE | Alu | AluJo |
CAediting_858850 | chr11_125656339_+ | SINE | Alu | AluJo |
CAediting_858851 | chr11_125658119_+ | SINE | Alu | AluJb |
CAediting_858852 | chr11_125658130_+ | SINE | Alu | AluJb |
CAediting_858853 | chr11_125658133_+ | SINE | Alu | AluJb |
CAediting_858854 | chr11_125658134_+ | SINE | Alu | AluJb |
CAediting_858855 | chr11_125658168_+ | SINE | Alu | AluJb |
CAediting_858856 | chr11_125658172_+ | SINE | Alu | AluJb |
CAediting_858857 | chr11_125658194_+ | SINE | Alu | AluJb |
CAediting_858858 | chr11_125658195_+ | SINE | Alu | AluJb |
CAediting_858859 | chr11_125658754_+ | SINE | Alu | AluJb |
CAediting_858860 | chr11_125658759_+ | SINE | Alu | AluJb |
CAediting_858861 | chr11_125658775_+ | SINE | Alu | AluJb |
CAediting_858862 | chr11_125658790_+ | SINE | Alu | AluJb |
CAediting_858863 | chr11_125670981_+ | SINE | Alu | AluJr4 |
CAediting_858864 | chr11_125671032_+ | SINE | Alu | AluJr4 |
CAediting_858865 | chr11_125671033_+ | SINE | Alu | AluJr4 |
CAediting_858866 | chr11_125671090_+ | SINE | Alu | AluJr4 |
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RNA A-to-I editing events in the alternative splicing sites for CHEK1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_858848 | chr11_125656335_+ | 125656333:125656341 | 5SS | 1+0i | AGAGTAAGA | 5.73 | AGGGTAAGA | 9.21 |
ES | CAediting_858849 | chr11_125656338_+ | 125656333:125656341 | 5SS | 0+3i | AGAGTAAGA | 5.73 | AGAGTGAGA | 2.37 |
ES | CAediting_858850 | chr11_125656339_+ | 125656333:125656341 | 5SS | 0+4i | AGAGTAAGA | 5.73 | AGAGTAGGA | 0.81 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHEK1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CHEK1 |
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The effects of the RNA editing to the miRNA binding sites for CHEK1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_858833 | chr11_125656230_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-140-3p | 125656225 | 125656231 | 7mer-m8 | 125656212 | 125656232 | 158.00 | -21.55 |
CAediting_858835 | chr11_125656244_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-150-5p | 125656241 | 125656247 | 7mer-m8 | 125656225 | 125656248 | 142.00 | -15.65 |
CAediting_858835 | chr11_125656244_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-5697 | 125656237 | 125656243 | 7mer-m8 | 125656223 | 125656244 | 146.00 | -18.01 |
CAediting_858837 | chr11_125656253_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4713-5p | 125656250 | 125656256 | 7mer-m8 | 125656234 | 125656257 | 147.00 | -19.90 |
CAediting_858837 | chr11_125656253_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6849-3p | 125656246 | 125656252 | 7mer-m8 | 125656232 | 125656253 | 140.00 | -14.77 |
CAediting_858837 | chr11_125656253_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7977 | 125656248 | 125656254 | 7mer-m8 | 125656238 | 125656255 | 145.00 | -18.51 |
CAediting_858841 | chr11_125656271_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-9900 | 125656269 | 125656275 | 7mer-m8 | 125656257 | 125656276 | 145.00 | -18.19 |
CAediting_858849 | chr11_125656338_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6794-3p | 125656332 | 125656338 | 7mer-m8 | 125656323 | 125656339 | 145.00 | -18.57 |
CAediting_858836 | chr11_125656247_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-3943 | 125656244 | 125656250 | 7mer-m8 | 125656231 | 125656251 | 146.00 | -22.11 |
CAediting_858836 | chr11_125656247_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4313 | 125656243 | 125656249 | 7mer-m8 | 125656231 | 125656250 | 142.00 | -18.73 |
CAediting_858838 | chr11_125656255_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4469 | 125656251 | 125656257 | 7mer-m8 | 125656239 | 125656258 | 146.00 | -19.95 |
CAediting_858839 | chr11_125656257_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6826-3p | 125656253 | 125656259 | 7mer-m8 | 125656237 | 125656260 | 160.00 | -30.91 |
CAediting_858839 | chr11_125656257_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6892-3p | 125656251 | 125656257 | 7mer-m8 | 125656238 | 125656258 | 148.00 | -22.76 |
CAediting_858840 | chr11_125656263_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4667-3p | 125656256 | 125656262 | 7mer-m8 | 125656240 | 125656263 | 151.00 | -22.23 |
CAediting_858842 | chr11_125656278_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4726-3p | 125656271 | 125656278 | 8mer-1a | 125656257 | 125656278 | 159.00 | -22.08 |
CAediting_858844 | chr11_125656296_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-3651 | 125656294 | 125656300 | 7mer-m8 | 125656279 | 125656301 | 147.00 | -20.00 |
CAediting_858844 | chr11_125656296_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4301 | 125656290 | 125656296 | 7mer-m8 | 125656279 | 125656297 | 147.00 | -16.49 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-10a-5p | 125656330 | 125656337 | 8mer-1a | 125656316 | 125656337 | 159.00 | -23.01 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-10b-5p | 125656330 | 125656337 | 8mer-1a | 125656316 | 125656337 | 151.00 | -19.36 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-339-5p | 125656329 | 125656335 | 7mer-m8 | 125656316 | 125656336 | 164.00 | -24.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_858850 | chr11_125656339_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-193a-5p | 125656337 | 125656343 | 7mer-m8 | 125656323 | 125656344 | 140 | -13.58 |
CAediting_858849 | chr11_125656338_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-200c-5p | 125656335 | 125656341 | 7mer-m8 | 125656320 | 125656342 | 145 | -10.87 |
CAediting_858850 | chr11_125656339_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-200c-5p | 125656335 | 125656341 | 7mer-m8 | 125656320 | 125656342 | 145 | -10.87 |
CAediting_858833 | chr11_125656230_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-3199 | 125656229 | 125656235 | 7mer-1a | 125656211 | 125656235 | 143 | -25.81 |
CAediting_858833 | chr11_125656230_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-3199 | 125656229 | 125656235 | 7mer-1a | 125656211 | 125656235 | 143 | -25.81 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-3664-5p | 125656330 | 125656337 | 8mer-1a | 125656315 | 125656337 | 155 | -19.54 |
CAediting_858838 | chr11_125656255_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-4723-3p | 125656252 | 125656259 | 8mer-1a | 125656236 | 125656259 | 154 | -23.23 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858849 | chr11_125656338_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858850 | chr11_125656339_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858848 | chr11_125656335_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858849 | chr11_125656338_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858850 | chr11_125656339_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-550b-3p | 125656333 | 125656340 | 8mer-1a | 125656321 | 125656340 | 153 | -16.01 |
CAediting_858835 | chr11_125656244_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-660-3p | 125656243 | 125656248 | 6mer | 125656228 | 125656249 | 142 | -22.74 |
CAediting_858836 | chr11_125656247_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-660-3p | 125656243 | 125656248 | 6mer | 125656228 | 125656249 | 142 | -22.74 |
CAediting_858838 | chr11_125656255_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6769b-3p | 125656252 | 125656259 | 8mer-1a | 125656239 | 125656259 | 150 | -19.62 |
CAediting_858836 | chr11_125656247_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6791-3p | 125656243 | 125656249 | 7mer-m8 | 125656230 | 125656250 | 154 | -17.66 |
CAediting_858839 | chr11_125656257_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6881-3p | 125656254 | 125656259 | 6mer | 125656239 | 125656260 | 153 | -24.54 |
CAediting_858837 | chr11_125656253_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7110-3p | 125656251 | 125656257 | 7mer-m8 | 125656237 | 125656258 | 147 | -20.74 |
CAediting_858838 | chr11_125656255_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7110-3p | 125656251 | 125656257 | 7mer-m8 | 125656237 | 125656258 | 147 | -20.74 |
CAediting_858839 | chr11_125656257_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7110-3p | 125656251 | 125656257 | 7mer-m8 | 125656237 | 125656258 | 147 | -20.74 |
CAediting_858833 | chr11_125656230_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7151-3p | 125656223 | 125656229 | 7mer-m8 | 125656208 | 125656230 | 154 | -26.75 |
CAediting_858844 | chr11_125656296_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7705 | 125656294 | 125656300 | 7mer-m8 | 125656279 | 125656301 | 148 | -14.56 |
CAediting_858845 | chr11_125656300_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7705 | 125656294 | 125656300 | 7mer-m8 | 125656279 | 125656301 | 148 | -14.56 |
CAediting_858847 | chr11_125656308_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-7978 | 125656306 | 125656311 | 6mer | 125656293 | 125656312 | 145 | -23.5 |
CAediting_858833 | chr11_125656230_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-8052 | 125656229 | 125656235 | 7mer-1a | 125656217 | 125656235 | 140 | -24.15 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_117844 | chr1_162342605_+ | ENSG00000149554.11 | ENST00000525396 | hsa-miR-556-3p | 125627769 | 125627775 | 7mer-m8 | 125627756 | 125627776 | 154 | -15.57 |
CAediting_77128 | chr1_85133844_+ | ENSG00000149554.11 | ENST00000428830 | hsa-miR-4423-3p | 125676050 | 125676056 | 7mer-m8 | 125676037 | 125676057 | 148 | -16.18 |
CAediting_396018 | chr5_1062918_- | ENSG00000149554.11 | ENST00000428830 | hsa-miR-4635 | 125676137 | 125676143 | 7mer-m8 | 125676124 | 125676144 | 162 | -23.09 |
CAediting_228905 | chr2_188297554_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-561-3p | 125655941 | 125655948 | 8mer-1a | 125655926 | 125655948 | 155 | -11.43 |
CAediting_442554 | chr5_154685830_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-1303 | 125656743 | 125656749 | 7mer-m8 | 125656727 | 125656750 | 149 | -19.96 |
CAediting_468389 | chr6_31355314_- | ENSG00000149554.11 | ENST00000534070 | hsa-miR-6891-5p | 125656831 | 125656837 | 7mer-m8 | 125656820 | 125656838 | 140 | -14.14 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_442554 | chr5_154685830_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-1303 | 125656347 | 125656352 | 6mer | 125656332 | 125656353 | 152 | -29.88 |
CAediting_1368054 | chr19_46709310_- | ENSG00000149554.11 | ENST00000534070 | hsa-miR-320e | 125655629 | 125655635 | 7mer-m8 | 125655619 | 125655636 | 141 | -12.68 |
CAediting_1368054 | chr19_46709310_- | ENSG00000149554.11 | ENST00000534070 | hsa-miR-320e | 125655782 | 125655788 | 7mer-m8 | 125655772 | 125655789 | 147 | -13.33 |
CAediting_1368054 | chr19_46709310_- | ENSG00000149554.11 | ENST00000534070 | hsa-miR-320e | 125656318 | 125656324 | 7mer-m8 | 125656308 | 125656325 | 148 | -14.67 |
CAediting_228905 | chr2_188297554_+ | ENSG00000149554.11 | ENST00000534070 | hsa-miR-561-3p | 125655517 | 125655523 | 7mer-m8 | 125655503 | 125655524 | 140 | -9.41 |
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The effects of the RNA editing to the stability of the RNA structures for CHEK1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CHEK1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUSC | CAediting_858833 | chr11_125656230_+ | 0.0407120372495982 | 0.186342422843489 | . | . | . | . |
SKCM | CAediting_858835 | chr11_125656244_+ | 0.00784183894921341 | 0.140906945974931 | . | . | . | . |
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Relation with cancer stages for CHEK1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_858835 | chr11_125656244_+ | 0.0251059596114506 | 0.117717169783635 |
HNSC | clinical_stage | CAediting_858835 | chr11_125656244_+ | 0.026755256863102 | 0.104077842489292 |
KIRP | clinical_stage | CAediting_858835 | chr11_125656244_+ | 0.0170910885046971 | -0.272858304250647 |
LIHC | pathologic_stage | CAediting_858835 | chr11_125656244_+ | 0.0396125426554939 | -0.179356415327289 |
LUSC | pathologic_stage | CAediting_858833 | chr11_125656230_+ | 0.0413879661172942 | -0.186506302794704 |
STAD | pathologic_stage | CAediting_858833 | chr11_125656230_+ | 0.00893138351411983 | -0.250486977514891 |
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Relation with survival for CHEK1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CHEK1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
CHEK1 | O14757 | DB12010 | Fostamatinib | Serine/threonine-protein kinase Chk1 | SmallMoleculeDrug | approved|investigational |
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RelatedDiseases for CHEK1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CHEK1 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
CHEK1 | C0032578 | Polyploidy | 1 | CTD_human |
CHEK1 | C0036341 | Schizophrenia | 1 | PSYGENET |
CHEK1 | C0678222 | Breast Carcinoma | 1 | CTD_human |
CHEK1 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
CHEK1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
CHEK1 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |