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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: KATNA1 (CAeditome ID:11104)

Gene summary for KATNA1

check button Gene summary
Gene informationGene symbol

KATNA1

Gene ID

11104

Gene namekatanin catalytic subunit A1
Synonyms-
Cytomap

6q25.1

Type of geneprotein-coding
Descriptionkatanin p60 ATPase-containing subunit A1katanin p60 (ATPase containing) subunit A 1katanin p60 subunit A1p60 katanin
Modification date20210518
UniProtAcc

O75449

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
KATNA1

GO:0008017

Katanin p60 ATPase-containing subunit A1

10751153

KATNA1

GO:0008568

Katanin p60 ATPase-containing subunit A1

10751153

KATNA1

GO:0000922

Katanin p60 ATPase-containing subunit A1

10751153

KATNA1

GO:0000922

Katanin p60 ATPase-containing subunit A1

19261606

KATNA1

GO:0005737

Katanin p60 ATPase-containing subunit A1

19261606

KATNA1

GO:0005737

Katanin p60 ATPase-containing subunit A1

26929214

KATNA1

GO:0005819

Katanin p60 ATPase-containing subunit A1

19261606

KATNA1

GO:0030496

Katanin p60 ATPase-containing subunit A1

19261606

KATNA1

GO:0097431

Katanin p60 ATPase-containing subunit A1

26929214


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RNA A-to-I events for KATNA1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000186625.12

check button RNA A-to-I editing events in Cancer.
CAediting_509252(149594987, -), CAediting_509253(149595096, -), CAediting_509254(149595328, -), CAediting_509255(149595346, -), CAediting_509256(149596284, -), CAediting_509257(149596291, -), CAediting_509258(149596452, -), CAediting_509259(149596502, -), CAediting_509260(149596503, -), CAediting_509261(149596513, -), CAediting_509262(149596671, -), CAediting_509263(149596685, -), CAediting_509264(149596689, -), CAediting_509265(149596694, -), CAediting_509266(149596698, -), CAediting_509267(149596761, -), CAediting_509268(149596842, -), CAediting_509269(149596906, -), CAediting_509270(149596932, -), CAediting_509271(149596937, -), CAediting_509272(149596956, -), CAediting_509273(149598531, -), CAediting_509274(149598549, -), CAediting_509275(149598557, -), CAediting_509276(149598622, -), CAediting_509277(149598651, -), CAediting_509278(149598669, -), CAediting_509279(149598692, -), CAediting_509280(149598700, -), CAediting_509281(149598712, -), CAediting_509282(149598895, -), CAediting_509283(149598948, -), CAediting_509284(149598957, -), CAediting_509285(149598973, -), CAediting_509286(149598975, -), CAediting_509287(149599003, -), CAediting_509288(149599073, -), CAediting_509289(149599107, -), CAediting_509290(149600485, -), CAediting_509291(149600557, -), CAediting_509292(149600571, -), CAediting_509293(149600619, -), CAediting_509294(149600718, -), CAediting_509295(149600866, -), CAediting_509296(149602196, -), CAediting_509297(149602859, -), CAediting_509298(149604237, -), CAediting_509299(149604254, -), CAediting_509300(149604390, -), CAediting_509301(149604414, -), CAediting_509302(149606687, -), CAediting_509303(149607874, -), CAediting_509304(149611318, -), CAediting_509305(149614606, -), CAediting_509306(149615081, -), CAediting_509307(149615382, -), CAediting_509308(149615387, -), CAediting_509309(149615486, -), CAediting_509310(149620567, -), CAediting_509311(149621262, -), CAediting_509312(149621686, -), CAediting_509313(149621687, -), CAediting_509314(149622257, -), CAediting_509315(149622271, -), CAediting_509316(149622884, -), CAediting_509317(149622887, -), CAediting_509318(149623654, -), CAediting_509319(149626827, -), CAediting_509320(149626836, -), CAediting_509321(149626872, -), CAediting_509322(149626876, -), CAediting_509323(149626901, -), CAediting_509324(149626902, -), CAediting_509325(149626932, -), CAediting_509326(149626940, -), CAediting_509327(149626983, -), CAediting_509328(149628195, -), CAediting_509329(149628310, -), CAediting_509330(149628314, -), CAediting_509331(149628382, -), CAediting_509332(149628404, -),

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RNA editing positional annotations for KATNA1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_509252chr6_149594987_-UTR3
CAediting_509253chr6_149595096_-exonic
CAediting_509254chr6_149595328_-intronic
CAediting_509255chr6_149595346_-intronic
CAediting_509256chr6_149596284_-intronic
CAediting_509257chr6_149596291_-intronic
CAediting_509258chr6_149596452_-intronic
CAediting_509259chr6_149596502_-intronic
CAediting_509260chr6_149596503_-intronic
CAediting_509261chr6_149596513_-intronic
CAediting_509262chr6_149596671_-intronic
CAediting_509263chr6_149596685_-intronic
CAediting_509264chr6_149596689_-intronic
CAediting_509265chr6_149596694_-intronic
CAediting_509266chr6_149596698_-intronic
CAediting_509267chr6_149596761_-intronic
CAediting_509268chr6_149596842_-intronic
CAediting_509269chr6_149596906_-intronic
CAediting_509270chr6_149596932_-intronic
CAediting_509271chr6_149596937_-intronic
CAediting_509272chr6_149596956_-intronic
CAediting_509273chr6_149598531_-ncRNA_intronic
CAediting_509274chr6_149598549_-ncRNA_intronic
CAediting_509275chr6_149598557_-ncRNA_intronic
CAediting_509276chr6_149598622_-ncRNA_intronic
CAediting_509277chr6_149598651_-ncRNA_intronic
CAediting_509278chr6_149598669_-ncRNA_intronic
CAediting_509279chr6_149598692_-ncRNA_intronic
CAediting_509280chr6_149598700_-ncRNA_intronic
CAediting_509281chr6_149598712_-ncRNA_intronic
CAediting_509282chr6_149598895_-ncRNA_intronic
CAediting_509283chr6_149598948_-ncRNA_intronic
CAediting_509284chr6_149598957_-ncRNA_intronic
CAediting_509285chr6_149598973_-ncRNA_intronic
CAediting_509286chr6_149598975_-ncRNA_intronic
CAediting_509287chr6_149599003_-ncRNA_intronic
CAediting_509288chr6_149599073_-ncRNA_intronic
CAediting_509289chr6_149599107_-ncRNA_intronic
CAediting_509290chr6_149600485_-ncRNA_intronic
CAediting_509291chr6_149600557_-ncRNA_intronic
CAediting_509292chr6_149600571_-ncRNA_intronic
CAediting_509293chr6_149600619_-ncRNA_intronic
CAediting_509294chr6_149600718_-ncRNA_intronic
CAediting_509295chr6_149600866_-ncRNA_intronic
CAediting_509296chr6_149602196_-ncRNA_intronic
CAediting_509297chr6_149602859_-ncRNA_intronic
CAediting_509298chr6_149604237_-ncRNA_intronic
CAediting_509299chr6_149604254_-ncRNA_intronic
CAediting_509300chr6_149604390_-ncRNA_intronic
CAediting_509301chr6_149604414_-ncRNA_intronic
CAediting_509302chr6_149606687_-ncRNA_intronic
CAediting_509303chr6_149607874_-ncRNA_intronic
CAediting_509304chr6_149611318_-ncRNA_intronic
CAediting_509305chr6_149614606_-ncRNA_intronic
CAediting_509306chr6_149615081_-ncRNA_intronic
CAediting_509307chr6_149615382_-ncRNA_intronic
CAediting_509308chr6_149615387_-ncRNA_intronic
CAediting_509309chr6_149615486_-ncRNA_intronic
CAediting_509310chr6_149620567_-ncRNA_intronic
CAediting_509311chr6_149621262_-ncRNA_intronic
CAediting_509312chr6_149621686_-ncRNA_intronic
CAediting_509313chr6_149621687_-ncRNA_intronic
CAediting_509314chr6_149622257_-ncRNA_intronic
CAediting_509315chr6_149622271_-ncRNA_intronic
CAediting_509316chr6_149622884_-ncRNA_intronic
CAediting_509317chr6_149622887_-ncRNA_intronic
CAediting_509318chr6_149623654_-ncRNA_intronic
CAediting_509319chr6_149626827_-ncRNA_intronic
CAediting_509320chr6_149626836_-ncRNA_intronic
CAediting_509321chr6_149626872_-ncRNA_intronic
CAediting_509322chr6_149626876_-ncRNA_intronic
CAediting_509323chr6_149626901_-ncRNA_intronic
CAediting_509324chr6_149626902_-ncRNA_intronic
CAediting_509325chr6_149626932_-ncRNA_intronic
CAediting_509326chr6_149626940_-ncRNA_intronic
CAediting_509327chr6_149626983_-ncRNA_intronic
CAediting_509328chr6_149628195_-ncRNA_intronic
CAediting_509329chr6_149628310_-ncRNA_intronic
CAediting_509330chr6_149628314_-ncRNA_intronic
CAediting_509331chr6_149628382_-ncRNA_intronic
CAediting_509332chr6_149628404_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_509256chr6_149596284_-SINEAluAluSz
CAediting_509257chr6_149596291_-SINEAluAluSz
CAediting_509258chr6_149596452_-SINEAluAluSz
CAediting_509259chr6_149596502_-SINEAluAluSz
CAediting_509260chr6_149596503_-SINEAluAluSz
CAediting_509261chr6_149596513_-SINEAluAluSz
CAediting_509262chr6_149596671_-SINEAluAluJo
CAediting_509263chr6_149596685_-SINEAluAluJo
CAediting_509264chr6_149596689_-SINEAluAluJo
CAediting_509265chr6_149596694_-SINEAluAluJo
CAediting_509266chr6_149596698_-SINEAluAluJo
CAediting_509267chr6_149596761_-SINEAluAluJo
CAediting_509268chr6_149596842_-SINEAluAluJo
CAediting_509269chr6_149596906_-SINEAluAluJo
CAediting_509270chr6_149596932_-SINEAluAluJo
CAediting_509271chr6_149596937_-SINEAluAluJo
CAediting_509272chr6_149596956_-SINEAluAluJo
CAediting_509273chr6_149598531_-SINEAluAluJo
CAediting_509274chr6_149598549_-SINEAluAluJo
CAediting_509275chr6_149598557_-SINEAluAluJo
CAediting_509276chr6_149598622_-SINEAluAluJo
CAediting_509277chr6_149598651_-SINEAluAluJo
CAediting_509278chr6_149598669_-SINEAluAluJo
CAediting_509279chr6_149598692_-SINEAluAluJo
CAediting_509280chr6_149598700_-SINEAluAluJo
CAediting_509281chr6_149598712_-SINEAluAluJo
CAediting_509282chr6_149598895_-SINEAluAluJr
CAediting_509283chr6_149598948_-SINEAluAluJr
CAediting_509284chr6_149598957_-SINEAluAluJr
CAediting_509285chr6_149598973_-SINEAluAluJr
CAediting_509286chr6_149598975_-SINEAluAluJr
CAediting_509287chr6_149599003_-SINEAluAluJr
CAediting_509288chr6_149599073_-SINEAluAluJr
CAediting_509289chr6_149599107_-SINEAluAluJr
CAediting_509290chr6_149600485_-SINEAluAluSx
CAediting_509291chr6_149600557_-SINEAluAluSx
CAediting_509292chr6_149600571_-SINEAluAluSx
CAediting_509293chr6_149600619_-SINEAluAluSx
CAediting_509294chr6_149600718_-SINEAluAluJb
CAediting_509295chr6_149600866_-SINEAluAluJb
CAediting_509296chr6_149602196_-SINEAluAluSc5
CAediting_509297chr6_149602859_-SINEAluAluSp
CAediting_509298chr6_149604237_-SINEAluAluJo
CAediting_509299chr6_149604254_-SINEAluAluJo
CAediting_509300chr6_149604390_-SINEAluAluJo
CAediting_509301chr6_149604414_-SINEAluAluJo
CAediting_509302chr6_149606687_-SINEAluAluSq
CAediting_509303chr6_149607874_-SINEAluAluSx
CAediting_509304chr6_149611318_-SINEAluAluSq2
CAediting_509305chr6_149614606_-SINEAluAluJr
CAediting_509306chr6_149615081_-SINEAluAluSz
CAediting_509307chr6_149615382_-SINEAluAluSx1
CAediting_509308chr6_149615387_-SINEAluAluSx1
CAediting_509309chr6_149615486_-SINEAluAluSx1
CAediting_509310chr6_149620567_-SINEAluAluSz
CAediting_509311chr6_149621262_-SINEAluAluYf1
CAediting_509312chr6_149621686_-SINEAluAluSx1
CAediting_509313chr6_149621687_-SINEAluAluSx1
CAediting_509314chr6_149622257_-SINEAluAluY
CAediting_509315chr6_149622271_-SINEAluAluY
CAediting_509316chr6_149622884_-SINEAluAluSx
CAediting_509317chr6_149622887_-SINEAluAluSx
CAediting_509318chr6_149623654_-SINEAluAluSz
CAediting_509319chr6_149626827_-SINEAluAluSx1
CAediting_509320chr6_149626836_-SINEAluAluSx1
CAediting_509321chr6_149626872_-SINEAluAluSx1
CAediting_509322chr6_149626876_-SINEAluAluSx1
CAediting_509323chr6_149626901_-SINEAluAluSx1
CAediting_509324chr6_149626902_-SINEAluAluSx1
CAediting_509325chr6_149626932_-SINEAluAluSx1
CAediting_509326chr6_149626940_-SINEAluAluSx1
CAediting_509327chr6_149626983_-SINEAluAluSx1
CAediting_509328chr6_149628195_-SINEAluAluY
CAediting_509329chr6_149628310_-SINEAluAluY
CAediting_509330chr6_149628314_-SINEAluAluY
CAediting_509331chr6_149628382_-SINEAluAluY
CAediting_509332chr6_149628404_-SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for KATNA1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000186625.12.KATNA1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000186625.12.KATNA1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KATNA1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for KATNA1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for KATNA1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_509252chr6_149594987_-ENSG00000186625.12ENST00000335647hsa-miR-16-2-3p1495949861495949938mer-1a149594986149595007144.00-6.76
CAediting_509252chr6_149594987_-ENSG00000186625.12ENST00000335647hsa-miR-195-3p1495949861495949938mer-1a149594986149595007140.00-5.18
CAediting_509252chr6_149594987_-ENSG00000186625.12ENST00000335643hsa-miR-16-2-3p1495949861495949938mer-1a149594986149595007144.00-6.76
CAediting_509252chr6_149594987_-ENSG00000186625.12ENST00000335643hsa-miR-195-3p1495949861495949938mer-1a149594986149595007140.00-5.18
CAediting_509253chr6_149595096_-ENSG00000186625.12ENST00000335643hsa-miR-6510-3p1495950941495951007mer-m8149595093149595113145.00-20.85

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_117844chr1_162342605_+ENSG00000186625.12ENST00000335647hsa-miR-556-3p1495948881495948947mer-m8149594887149594907155-11.2
CAediting_1229415chr17_67471547_+ENSG00000186625.12ENST00000335643hsa-miR-548aa1495951141495951218mer-1a149595114149595139145-10.7
CAediting_117844chr1_162342605_+ENSG00000186625.12ENST00000335643hsa-miR-556-3p1495948881495948947mer-m8149594887149594907155-11.2

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for KATNA1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000335643.11protein_codingSoverviewSoverview
ENST00000335647.8protein_codingSoverviewSoverview
ENST00000367411.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_509252ENST00000335643.11chr6_149594987_--487.20-486.20-486.40
CAediting_509253ENST00000335643.11chr6_149595096_--485.40-486.20-486.40
CAediting_509252ENST00000335647.8chr6_149594987_--444.00-444.90-443.20
CAediting_509253ENST00000335647.8chr6_149595096_--444.10-444.90-443.20
CAediting_509252ENST00000367411.5chr6_149594987_--598.70-599.60-597.90
CAediting_509253ENST00000367411.5chr6_149595096_--598.80-599.60-597.90

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Relation with ADAR for KATNA1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for KATNA1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for KATNA1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for KATNA1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for KATNA1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource