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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: KATNA1 (CAeditome ID:11104) |
Gene summary for KATNA1 |
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Gene information | Gene symbol | KATNA1 | Gene ID | 11104 |
Gene name | katanin catalytic subunit A1 | |
Synonyms | - | |
Cytomap | 6q25.1 | |
Type of gene | protein-coding | |
Description | katanin p60 ATPase-containing subunit A1katanin p60 (ATPase containing) subunit A 1katanin p60 subunit A1p60 katanin | |
Modification date | 20210518 | |
UniProtAcc | O75449 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
KATNA1 | GO:0008017 | Katanin p60 ATPase-containing subunit A1 | 10751153 |
KATNA1 | GO:0008568 | Katanin p60 ATPase-containing subunit A1 | 10751153 |
KATNA1 | GO:0000922 | Katanin p60 ATPase-containing subunit A1 | 10751153 |
KATNA1 | GO:0000922 | Katanin p60 ATPase-containing subunit A1 | 19261606 |
KATNA1 | GO:0005737 | Katanin p60 ATPase-containing subunit A1 | 19261606 |
KATNA1 | GO:0005737 | Katanin p60 ATPase-containing subunit A1 | 26929214 |
KATNA1 | GO:0005819 | Katanin p60 ATPase-containing subunit A1 | 19261606 |
KATNA1 | GO:0030496 | Katanin p60 ATPase-containing subunit A1 | 19261606 |
KATNA1 | GO:0097431 | Katanin p60 ATPase-containing subunit A1 | 26929214 |
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RNA A-to-I events for KATNA1 |
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CAediting_509252(149594987, -), CAediting_509253(149595096, -), CAediting_509254(149595328, -), CAediting_509255(149595346, -), CAediting_509256(149596284, -), CAediting_509257(149596291, -), CAediting_509258(149596452, -), CAediting_509259(149596502, -), CAediting_509260(149596503, -), CAediting_509261(149596513, -), CAediting_509262(149596671, -), CAediting_509263(149596685, -), CAediting_509264(149596689, -), CAediting_509265(149596694, -), CAediting_509266(149596698, -), CAediting_509267(149596761, -), CAediting_509268(149596842, -), CAediting_509269(149596906, -), CAediting_509270(149596932, -), CAediting_509271(149596937, -), CAediting_509272(149596956, -), CAediting_509273(149598531, -), CAediting_509274(149598549, -), CAediting_509275(149598557, -), CAediting_509276(149598622, -), CAediting_509277(149598651, -), CAediting_509278(149598669, -), CAediting_509279(149598692, -), CAediting_509280(149598700, -), CAediting_509281(149598712, -), CAediting_509282(149598895, -), CAediting_509283(149598948, -), CAediting_509284(149598957, -), CAediting_509285(149598973, -), CAediting_509286(149598975, -), CAediting_509287(149599003, -), CAediting_509288(149599073, -), CAediting_509289(149599107, -), CAediting_509290(149600485, -), CAediting_509291(149600557, -), CAediting_509292(149600571, -), CAediting_509293(149600619, -), CAediting_509294(149600718, -), CAediting_509295(149600866, -), CAediting_509296(149602196, -), CAediting_509297(149602859, -), CAediting_509298(149604237, -), CAediting_509299(149604254, -), CAediting_509300(149604390, -), CAediting_509301(149604414, -), CAediting_509302(149606687, -), CAediting_509303(149607874, -), CAediting_509304(149611318, -), CAediting_509305(149614606, -), CAediting_509306(149615081, -), CAediting_509307(149615382, -), CAediting_509308(149615387, -), CAediting_509309(149615486, -), CAediting_509310(149620567, -), CAediting_509311(149621262, -), CAediting_509312(149621686, -), CAediting_509313(149621687, -), CAediting_509314(149622257, -), CAediting_509315(149622271, -), CAediting_509316(149622884, -), CAediting_509317(149622887, -), CAediting_509318(149623654, -), CAediting_509319(149626827, -), CAediting_509320(149626836, -), CAediting_509321(149626872, -), CAediting_509322(149626876, -), CAediting_509323(149626901, -), CAediting_509324(149626902, -), CAediting_509325(149626932, -), CAediting_509326(149626940, -), CAediting_509327(149626983, -), CAediting_509328(149628195, -), CAediting_509329(149628310, -), CAediting_509330(149628314, -), CAediting_509331(149628382, -), CAediting_509332(149628404, -), |
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RNA editing positional annotations for KATNA1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_509252 | chr6_149594987_- | UTR3 |
CAediting_509253 | chr6_149595096_- | exonic |
CAediting_509254 | chr6_149595328_- | intronic |
CAediting_509255 | chr6_149595346_- | intronic |
CAediting_509256 | chr6_149596284_- | intronic |
CAediting_509257 | chr6_149596291_- | intronic |
CAediting_509258 | chr6_149596452_- | intronic |
CAediting_509259 | chr6_149596502_- | intronic |
CAediting_509260 | chr6_149596503_- | intronic |
CAediting_509261 | chr6_149596513_- | intronic |
CAediting_509262 | chr6_149596671_- | intronic |
CAediting_509263 | chr6_149596685_- | intronic |
CAediting_509264 | chr6_149596689_- | intronic |
CAediting_509265 | chr6_149596694_- | intronic |
CAediting_509266 | chr6_149596698_- | intronic |
CAediting_509267 | chr6_149596761_- | intronic |
CAediting_509268 | chr6_149596842_- | intronic |
CAediting_509269 | chr6_149596906_- | intronic |
CAediting_509270 | chr6_149596932_- | intronic |
CAediting_509271 | chr6_149596937_- | intronic |
CAediting_509272 | chr6_149596956_- | intronic |
CAediting_509273 | chr6_149598531_- | ncRNA_intronic |
CAediting_509274 | chr6_149598549_- | ncRNA_intronic |
CAediting_509275 | chr6_149598557_- | ncRNA_intronic |
CAediting_509276 | chr6_149598622_- | ncRNA_intronic |
CAediting_509277 | chr6_149598651_- | ncRNA_intronic |
CAediting_509278 | chr6_149598669_- | ncRNA_intronic |
CAediting_509279 | chr6_149598692_- | ncRNA_intronic |
CAediting_509280 | chr6_149598700_- | ncRNA_intronic |
CAediting_509281 | chr6_149598712_- | ncRNA_intronic |
CAediting_509282 | chr6_149598895_- | ncRNA_intronic |
CAediting_509283 | chr6_149598948_- | ncRNA_intronic |
CAediting_509284 | chr6_149598957_- | ncRNA_intronic |
CAediting_509285 | chr6_149598973_- | ncRNA_intronic |
CAediting_509286 | chr6_149598975_- | ncRNA_intronic |
CAediting_509287 | chr6_149599003_- | ncRNA_intronic |
CAediting_509288 | chr6_149599073_- | ncRNA_intronic |
CAediting_509289 | chr6_149599107_- | ncRNA_intronic |
CAediting_509290 | chr6_149600485_- | ncRNA_intronic |
CAediting_509291 | chr6_149600557_- | ncRNA_intronic |
CAediting_509292 | chr6_149600571_- | ncRNA_intronic |
CAediting_509293 | chr6_149600619_- | ncRNA_intronic |
CAediting_509294 | chr6_149600718_- | ncRNA_intronic |
CAediting_509295 | chr6_149600866_- | ncRNA_intronic |
CAediting_509296 | chr6_149602196_- | ncRNA_intronic |
CAediting_509297 | chr6_149602859_- | ncRNA_intronic |
CAediting_509298 | chr6_149604237_- | ncRNA_intronic |
CAediting_509299 | chr6_149604254_- | ncRNA_intronic |
CAediting_509300 | chr6_149604390_- | ncRNA_intronic |
CAediting_509301 | chr6_149604414_- | ncRNA_intronic |
CAediting_509302 | chr6_149606687_- | ncRNA_intronic |
CAediting_509303 | chr6_149607874_- | ncRNA_intronic |
CAediting_509304 | chr6_149611318_- | ncRNA_intronic |
CAediting_509305 | chr6_149614606_- | ncRNA_intronic |
CAediting_509306 | chr6_149615081_- | ncRNA_intronic |
CAediting_509307 | chr6_149615382_- | ncRNA_intronic |
CAediting_509308 | chr6_149615387_- | ncRNA_intronic |
CAediting_509309 | chr6_149615486_- | ncRNA_intronic |
CAediting_509310 | chr6_149620567_- | ncRNA_intronic |
CAediting_509311 | chr6_149621262_- | ncRNA_intronic |
CAediting_509312 | chr6_149621686_- | ncRNA_intronic |
CAediting_509313 | chr6_149621687_- | ncRNA_intronic |
CAediting_509314 | chr6_149622257_- | ncRNA_intronic |
CAediting_509315 | chr6_149622271_- | ncRNA_intronic |
CAediting_509316 | chr6_149622884_- | ncRNA_intronic |
CAediting_509317 | chr6_149622887_- | ncRNA_intronic |
CAediting_509318 | chr6_149623654_- | ncRNA_intronic |
CAediting_509319 | chr6_149626827_- | ncRNA_intronic |
CAediting_509320 | chr6_149626836_- | ncRNA_intronic |
CAediting_509321 | chr6_149626872_- | ncRNA_intronic |
CAediting_509322 | chr6_149626876_- | ncRNA_intronic |
CAediting_509323 | chr6_149626901_- | ncRNA_intronic |
CAediting_509324 | chr6_149626902_- | ncRNA_intronic |
CAediting_509325 | chr6_149626932_- | ncRNA_intronic |
CAediting_509326 | chr6_149626940_- | ncRNA_intronic |
CAediting_509327 | chr6_149626983_- | ncRNA_intronic |
CAediting_509328 | chr6_149628195_- | ncRNA_intronic |
CAediting_509329 | chr6_149628310_- | ncRNA_intronic |
CAediting_509330 | chr6_149628314_- | ncRNA_intronic |
CAediting_509331 | chr6_149628382_- | ncRNA_intronic |
CAediting_509332 | chr6_149628404_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_509256 | chr6_149596284_- | SINE | Alu | AluSz |
CAediting_509257 | chr6_149596291_- | SINE | Alu | AluSz |
CAediting_509258 | chr6_149596452_- | SINE | Alu | AluSz |
CAediting_509259 | chr6_149596502_- | SINE | Alu | AluSz |
CAediting_509260 | chr6_149596503_- | SINE | Alu | AluSz |
CAediting_509261 | chr6_149596513_- | SINE | Alu | AluSz |
CAediting_509262 | chr6_149596671_- | SINE | Alu | AluJo |
CAediting_509263 | chr6_149596685_- | SINE | Alu | AluJo |
CAediting_509264 | chr6_149596689_- | SINE | Alu | AluJo |
CAediting_509265 | chr6_149596694_- | SINE | Alu | AluJo |
CAediting_509266 | chr6_149596698_- | SINE | Alu | AluJo |
CAediting_509267 | chr6_149596761_- | SINE | Alu | AluJo |
CAediting_509268 | chr6_149596842_- | SINE | Alu | AluJo |
CAediting_509269 | chr6_149596906_- | SINE | Alu | AluJo |
CAediting_509270 | chr6_149596932_- | SINE | Alu | AluJo |
CAediting_509271 | chr6_149596937_- | SINE | Alu | AluJo |
CAediting_509272 | chr6_149596956_- | SINE | Alu | AluJo |
CAediting_509273 | chr6_149598531_- | SINE | Alu | AluJo |
CAediting_509274 | chr6_149598549_- | SINE | Alu | AluJo |
CAediting_509275 | chr6_149598557_- | SINE | Alu | AluJo |
CAediting_509276 | chr6_149598622_- | SINE | Alu | AluJo |
CAediting_509277 | chr6_149598651_- | SINE | Alu | AluJo |
CAediting_509278 | chr6_149598669_- | SINE | Alu | AluJo |
CAediting_509279 | chr6_149598692_- | SINE | Alu | AluJo |
CAediting_509280 | chr6_149598700_- | SINE | Alu | AluJo |
CAediting_509281 | chr6_149598712_- | SINE | Alu | AluJo |
CAediting_509282 | chr6_149598895_- | SINE | Alu | AluJr |
CAediting_509283 | chr6_149598948_- | SINE | Alu | AluJr |
CAediting_509284 | chr6_149598957_- | SINE | Alu | AluJr |
CAediting_509285 | chr6_149598973_- | SINE | Alu | AluJr |
CAediting_509286 | chr6_149598975_- | SINE | Alu | AluJr |
CAediting_509287 | chr6_149599003_- | SINE | Alu | AluJr |
CAediting_509288 | chr6_149599073_- | SINE | Alu | AluJr |
CAediting_509289 | chr6_149599107_- | SINE | Alu | AluJr |
CAediting_509290 | chr6_149600485_- | SINE | Alu | AluSx |
CAediting_509291 | chr6_149600557_- | SINE | Alu | AluSx |
CAediting_509292 | chr6_149600571_- | SINE | Alu | AluSx |
CAediting_509293 | chr6_149600619_- | SINE | Alu | AluSx |
CAediting_509294 | chr6_149600718_- | SINE | Alu | AluJb |
CAediting_509295 | chr6_149600866_- | SINE | Alu | AluJb |
CAediting_509296 | chr6_149602196_- | SINE | Alu | AluSc5 |
CAediting_509297 | chr6_149602859_- | SINE | Alu | AluSp |
CAediting_509298 | chr6_149604237_- | SINE | Alu | AluJo |
CAediting_509299 | chr6_149604254_- | SINE | Alu | AluJo |
CAediting_509300 | chr6_149604390_- | SINE | Alu | AluJo |
CAediting_509301 | chr6_149604414_- | SINE | Alu | AluJo |
CAediting_509302 | chr6_149606687_- | SINE | Alu | AluSq |
CAediting_509303 | chr6_149607874_- | SINE | Alu | AluSx |
CAediting_509304 | chr6_149611318_- | SINE | Alu | AluSq2 |
CAediting_509305 | chr6_149614606_- | SINE | Alu | AluJr |
CAediting_509306 | chr6_149615081_- | SINE | Alu | AluSz |
CAediting_509307 | chr6_149615382_- | SINE | Alu | AluSx1 |
CAediting_509308 | chr6_149615387_- | SINE | Alu | AluSx1 |
CAediting_509309 | chr6_149615486_- | SINE | Alu | AluSx1 |
CAediting_509310 | chr6_149620567_- | SINE | Alu | AluSz |
CAediting_509311 | chr6_149621262_- | SINE | Alu | AluYf1 |
CAediting_509312 | chr6_149621686_- | SINE | Alu | AluSx1 |
CAediting_509313 | chr6_149621687_- | SINE | Alu | AluSx1 |
CAediting_509314 | chr6_149622257_- | SINE | Alu | AluY |
CAediting_509315 | chr6_149622271_- | SINE | Alu | AluY |
CAediting_509316 | chr6_149622884_- | SINE | Alu | AluSx |
CAediting_509317 | chr6_149622887_- | SINE | Alu | AluSx |
CAediting_509318 | chr6_149623654_- | SINE | Alu | AluSz |
CAediting_509319 | chr6_149626827_- | SINE | Alu | AluSx1 |
CAediting_509320 | chr6_149626836_- | SINE | Alu | AluSx1 |
CAediting_509321 | chr6_149626872_- | SINE | Alu | AluSx1 |
CAediting_509322 | chr6_149626876_- | SINE | Alu | AluSx1 |
CAediting_509323 | chr6_149626901_- | SINE | Alu | AluSx1 |
CAediting_509324 | chr6_149626902_- | SINE | Alu | AluSx1 |
CAediting_509325 | chr6_149626932_- | SINE | Alu | AluSx1 |
CAediting_509326 | chr6_149626940_- | SINE | Alu | AluSx1 |
CAediting_509327 | chr6_149626983_- | SINE | Alu | AluSx1 |
CAediting_509328 | chr6_149628195_- | SINE | Alu | AluY |
CAediting_509329 | chr6_149628310_- | SINE | Alu | AluY |
CAediting_509330 | chr6_149628314_- | SINE | Alu | AluY |
CAediting_509331 | chr6_149628382_- | SINE | Alu | AluY |
CAediting_509332 | chr6_149628404_- | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for KATNA1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KATNA1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for KATNA1 |
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The effects of the RNA editing to the miRNA binding sites for KATNA1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_509252 | chr6_149594987_- | ENSG00000186625.12 | ENST00000335647 | hsa-miR-16-2-3p | 149594986 | 149594993 | 8mer-1a | 149594986 | 149595007 | 144.00 | -6.76 |
CAediting_509252 | chr6_149594987_- | ENSG00000186625.12 | ENST00000335647 | hsa-miR-195-3p | 149594986 | 149594993 | 8mer-1a | 149594986 | 149595007 | 140.00 | -5.18 |
CAediting_509252 | chr6_149594987_- | ENSG00000186625.12 | ENST00000335643 | hsa-miR-16-2-3p | 149594986 | 149594993 | 8mer-1a | 149594986 | 149595007 | 144.00 | -6.76 |
CAediting_509252 | chr6_149594987_- | ENSG00000186625.12 | ENST00000335643 | hsa-miR-195-3p | 149594986 | 149594993 | 8mer-1a | 149594986 | 149595007 | 140.00 | -5.18 |
CAediting_509253 | chr6_149595096_- | ENSG00000186625.12 | ENST00000335643 | hsa-miR-6510-3p | 149595094 | 149595100 | 7mer-m8 | 149595093 | 149595113 | 145.00 | -20.85 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_117844 | chr1_162342605_+ | ENSG00000186625.12 | ENST00000335647 | hsa-miR-556-3p | 149594888 | 149594894 | 7mer-m8 | 149594887 | 149594907 | 155 | -11.2 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000186625.12 | ENST00000335643 | hsa-miR-548aa | 149595114 | 149595121 | 8mer-1a | 149595114 | 149595139 | 145 | -10.7 |
CAediting_117844 | chr1_162342605_+ | ENSG00000186625.12 | ENST00000335643 | hsa-miR-556-3p | 149594888 | 149594894 | 7mer-m8 | 149594887 | 149594907 | 155 | -11.2 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for KATNA1 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000335643.11 | protein_coding | ![]() | ![]() |
ENST00000335647.8 | protein_coding | ![]() | ![]() |
ENST00000367411.5 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_509252 | ENST00000335643.11 | chr6_149594987_- | -487.20 | -486.20 | -486.40 |
CAediting_509253 | ENST00000335643.11 | chr6_149595096_- | -485.40 | -486.20 | -486.40 |
CAediting_509252 | ENST00000335647.8 | chr6_149594987_- | -444.00 | -444.90 | -443.20 |
CAediting_509253 | ENST00000335647.8 | chr6_149595096_- | -444.10 | -444.90 | -443.20 |
CAediting_509252 | ENST00000367411.5 | chr6_149594987_- | -598.70 | -599.60 | -597.90 |
CAediting_509253 | ENST00000367411.5 | chr6_149595096_- | -598.80 | -599.60 | -597.90 |
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Relation with ADAR for KATNA1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for KATNA1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for KATNA1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for KATNA1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KATNA1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |