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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CHD1 (CAeditome ID:1105)

Gene summary for CHD1

check button Gene summary
Gene informationGene symbol

CHD1

Gene ID

1105

Gene namechromodomain helicase DNA binding protein 1
SynonymsCHD-1|PILBOS
Cytomap

5q15-q21.1

Type of geneprotein-coding
Descriptionchromodomain-helicase-DNA-binding protein 1ATP-dependent helicase CHD1
Modification date20210518
UniProtAcc

O14646

Context- 33414516(CHD1 loss negatively influences metastasis-free survival in R0-resected prostate cancer patients and promotes spontaneous metastasis in vivo)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CHD1

GO:0035064

Chromodomain-helicase-DNA-binding protein 1

21029866

CHD1

GO:0005634

Chromodomain-helicase-DNA-binding protein 1

22046413

CHD1

GO:0005737

Chromodomain-helicase-DNA-binding protein 1

22046413


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RNA A-to-I events for CHD1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000153922.9
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_421295(98861598, -), CAediting_421296(98861607, -), CAediting_421297(98861610, -), CAediting_421298(98861613, -), CAediting_421299(98861617, -), CAediting_421300(98861626, -), CAediting_421301(98861630, -), CAediting_421302(98861638, -), CAediting_421303(98861640, -), CAediting_421304(98861650, -), CAediting_421305(98861695, -), CAediting_421306(98861708, -), CAediting_421307(98861728, -), CAediting_421308(98861736, -), CAediting_421309(98861766, -), CAediting_421310(98861871, -), CAediting_421311(98861888, -), CAediting_421312(98861913, -), CAediting_421313(98861965, -), CAediting_421314(98861969, -), CAediting_421315(98861974, -), CAediting_421316(98861991, -), CAediting_421317(98862033, -), CAediting_421318(98862045, -), CAediting_421319(98862057, -), CAediting_421320(98862230, -), CAediting_421321(98862231, -), CAediting_421322(98864573, -), CAediting_421323(98864600, -), CAediting_421324(98864609, -), CAediting_421325(98864611, -), CAediting_421326(98864612, -), CAediting_421327(98867863, -), CAediting_421328(98867868, -), CAediting_421329(98867870, -), CAediting_421330(98867875, -), CAediting_421331(98867886, -), CAediting_421332(98867899, -), CAediting_421333(98867914, -), CAediting_421334(98867931, -), CAediting_421335(98867935, -), CAediting_421336(98867940, -), CAediting_421337(98867941, -), CAediting_421338(98867950, -), CAediting_421339(98867966, -), CAediting_421340(98867967, -), CAediting_421341(98867976, -), CAediting_421342(98867985, -), CAediting_421343(98868072, -), CAediting_421344(98868277, -), CAediting_421345(98868281, -), CAediting_421346(98868301, -), CAediting_421347(98872998, -), CAediting_421348(98873046, -), CAediting_421349(98883938, -), CAediting_421350(98883993, -), CAediting_421351(98884279, -), CAediting_421352(98884341, -), CAediting_421353(98884346, -), CAediting_421354(98884347, -), CAediting_421355(98884771, -), CAediting_421356(98884779, -), CAediting_421357(98884809, -), CAediting_421358(98884854, -), CAediting_421359(98884978, -), CAediting_421360(98884983, -), CAediting_421361(98884999, -), CAediting_421362(98885018, -), CAediting_421363(98885021, -), CAediting_421364(98885023, -), CAediting_421365(98885141, -), CAediting_421366(98885157, -), CAediting_421367(98885226, -), CAediting_421368(98885244, -), CAediting_421369(98885284, -), CAediting_421370(98891171, -), CAediting_421371(98891269, -), CAediting_421372(98891271, -), CAediting_421373(98891284, -), CAediting_421374(98891309, -), CAediting_421375(98891314, -), CAediting_421376(98891350, -), CAediting_421377(98891554, -), CAediting_421378(98891566, -), CAediting_421379(98891619, -), CAediting_421380(98891711, -), CAediting_421381(98891749, -), CAediting_421382(98891754, -), CAediting_421383(98891765, -), CAediting_421384(98891775, -), CAediting_421385(98894960, -), CAediting_421386(98894986, -), CAediting_421387(98894989, -), CAediting_421388(98895000, -), CAediting_421389(98895003, -), CAediting_421390(98895587, -), CAediting_421391(98895641, -), CAediting_421392(98895645, -), CAediting_421393(98895671, -), CAediting_421394(98895677, -), CAediting_421395(98900273, -), CAediting_421396(98916192, -), CAediting_421397(98918186, -), CAediting_421398(98918190, -), CAediting_421399(98918202, -), CAediting_421400(98918222, -), CAediting_421401(98918233, -), CAediting_421402(98918274, -), CAediting_421403(98918288, -), CAediting_421404(98918293, -), CAediting_421405(98918294, -), CAediting_421406(98918296, -), CAediting_421407(98918355, -), CAediting_421408(98918611, -), CAediting_421409(98918640, -), CAediting_421410(98918644, -), CAediting_421411(98918656, -), CAediting_421412(98918660, -), CAediting_421413(98918685, -), CAediting_421414(98921895, -), CAediting_421415(98921990, -), CAediting_421416(98923450, -), CAediting_421417(98923518, -), CAediting_421418(98923532, -), CAediting_421419(98923583, -), CAediting_421420(98923584, -), CAediting_421421(98923590, -), CAediting_421422(98923591, -), CAediting_421423(98923592, -), CAediting_421424(98923593, -), CAediting_421425(98923596, -), CAediting_421426(98923608, -), CAediting_421427(98923615, -), CAediting_421428(98923694, -), CAediting_421429(98923997, -), CAediting_421430(98923999, -), CAediting_421431(98924063, -), CAediting_421432(98924150, -), CAediting_421433(98924161, -), CAediting_421434(98924162, -), CAediting_421435(98924163, -), CAediting_421436(98924189, -), CAediting_421437(98924199, -), CAediting_421438(98924215, -), CAediting_421439(98925296, -), CAediting_421440(98925305, -), CAediting_421441(98925322, -), CAediting_421442(98925323, -), CAediting_421443(98925343, -), CAediting_421444(98925937, -),

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RNA editing positional annotations for CHD1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_421295chr5_98861598_-ncRNA_intronic
CAediting_421296chr5_98861607_-ncRNA_intronic
CAediting_421297chr5_98861610_-ncRNA_intronic
CAediting_421298chr5_98861613_-ncRNA_intronic
CAediting_421299chr5_98861617_-ncRNA_intronic
CAediting_421300chr5_98861626_-ncRNA_intronic
CAediting_421301chr5_98861630_-ncRNA_intronic
CAediting_421302chr5_98861638_-ncRNA_intronic
CAediting_421303chr5_98861640_-ncRNA_intronic
CAediting_421304chr5_98861650_-ncRNA_intronic
CAediting_421305chr5_98861695_-ncRNA_intronic
CAediting_421306chr5_98861708_-ncRNA_intronic
CAediting_421307chr5_98861728_-ncRNA_intronic
CAediting_421308chr5_98861736_-ncRNA_intronic
CAediting_421309chr5_98861766_-ncRNA_intronic
CAediting_421310chr5_98861871_-ncRNA_intronic
CAediting_421311chr5_98861888_-ncRNA_intronic
CAediting_421312chr5_98861913_-ncRNA_intronic
CAediting_421313chr5_98861965_-ncRNA_intronic
CAediting_421314chr5_98861969_-ncRNA_intronic
CAediting_421315chr5_98861974_-ncRNA_intronic
CAediting_421316chr5_98861991_-ncRNA_intronic
CAediting_421317chr5_98862033_-ncRNA_intronic
CAediting_421318chr5_98862045_-ncRNA_intronic
CAediting_421319chr5_98862057_-ncRNA_intronic
CAediting_421320chr5_98862230_-ncRNA_intronic
CAediting_421321chr5_98862231_-ncRNA_intronic
CAediting_421322chr5_98864573_-ncRNA_intronic
CAediting_421323chr5_98864600_-ncRNA_intronic
CAediting_421324chr5_98864609_-ncRNA_intronic
CAediting_421325chr5_98864611_-ncRNA_intronic
CAediting_421326chr5_98864612_-ncRNA_intronic
CAediting_421327chr5_98867863_-ncRNA_intronic
CAediting_421328chr5_98867868_-ncRNA_intronic
CAediting_421329chr5_98867870_-ncRNA_intronic
CAediting_421330chr5_98867875_-ncRNA_intronic
CAediting_421331chr5_98867886_-ncRNA_intronic
CAediting_421332chr5_98867899_-ncRNA_intronic
CAediting_421333chr5_98867914_-ncRNA_intronic
CAediting_421334chr5_98867931_-ncRNA_intronic
CAediting_421335chr5_98867935_-ncRNA_intronic
CAediting_421336chr5_98867940_-ncRNA_intronic
CAediting_421337chr5_98867941_-ncRNA_intronic
CAediting_421338chr5_98867950_-ncRNA_intronic
CAediting_421339chr5_98867966_-ncRNA_intronic
CAediting_421340chr5_98867967_-ncRNA_intronic
CAediting_421341chr5_98867976_-ncRNA_intronic
CAediting_421342chr5_98867985_-ncRNA_intronic
CAediting_421343chr5_98868072_-ncRNA_intronic
CAediting_421344chr5_98868277_-ncRNA_intronic
CAediting_421345chr5_98868281_-ncRNA_intronic
CAediting_421346chr5_98868301_-ncRNA_intronic
CAediting_421347chr5_98872998_-intronic
CAediting_421348chr5_98873046_-intronic
CAediting_421349chr5_98883938_-ncRNA_intronic
CAediting_421350chr5_98883993_-ncRNA_intronic
CAediting_421351chr5_98884279_-ncRNA_intronic
CAediting_421352chr5_98884341_-ncRNA_intronic
CAediting_421353chr5_98884346_-ncRNA_intronic
CAediting_421354chr5_98884347_-ncRNA_intronic
CAediting_421355chr5_98884771_-ncRNA_intronic
CAediting_421356chr5_98884779_-ncRNA_intronic
CAediting_421357chr5_98884809_-ncRNA_intronic
CAediting_421358chr5_98884854_-ncRNA_intronic
CAediting_421359chr5_98884978_-ncRNA_intronic
CAediting_421360chr5_98884983_-ncRNA_intronic
CAediting_421361chr5_98884999_-ncRNA_intronic
CAediting_421362chr5_98885018_-ncRNA_intronic
CAediting_421363chr5_98885021_-ncRNA_intronic
CAediting_421364chr5_98885023_-ncRNA_intronic
CAediting_421365chr5_98885141_-ncRNA_intronic
CAediting_421366chr5_98885157_-ncRNA_intronic
CAediting_421367chr5_98885226_-ncRNA_intronic
CAediting_421368chr5_98885244_-ncRNA_intronic
CAediting_421369chr5_98885284_-ncRNA_intronic
CAediting_421370chr5_98891171_-intronic
CAediting_421371chr5_98891269_-intronic
CAediting_421372chr5_98891271_-intronic
CAediting_421373chr5_98891284_-intronic
CAediting_421374chr5_98891309_-intronic
CAediting_421375chr5_98891314_-intronic
CAediting_421376chr5_98891350_-intronic
CAediting_421377chr5_98891554_-intronic
CAediting_421378chr5_98891566_-intronic
CAediting_421379chr5_98891619_-intronic
CAediting_421380chr5_98891711_-intronic
CAediting_421381chr5_98891749_-intronic
CAediting_421382chr5_98891754_-intronic
CAediting_421383chr5_98891765_-intronic
CAediting_421384chr5_98891775_-intronic
CAediting_421385chr5_98894960_-intronic
CAediting_421386chr5_98894986_-intronic
CAediting_421387chr5_98894989_-intronic
CAediting_421388chr5_98895000_-intronic
CAediting_421389chr5_98895003_-intronic
CAediting_421390chr5_98895587_-intronic
CAediting_421391chr5_98895641_-intronic
CAediting_421392chr5_98895645_-intronic
CAediting_421393chr5_98895671_-intronic
CAediting_421394chr5_98895677_-intronic
CAediting_421395chr5_98900273_-intronic
CAediting_421396chr5_98916192_-intronic
CAediting_421397chr5_98918186_-intronic
CAediting_421398chr5_98918190_-intronic
CAediting_421399chr5_98918202_-intronic
CAediting_421400chr5_98918222_-intronic
CAediting_421401chr5_98918233_-intronic
CAediting_421402chr5_98918274_-intronic
CAediting_421403chr5_98918288_-intronic
CAediting_421404chr5_98918293_-intronic
CAediting_421405chr5_98918294_-intronic
CAediting_421406chr5_98918296_-intronic
CAediting_421407chr5_98918355_-intronic
CAediting_421408chr5_98918611_-intronic
CAediting_421409chr5_98918640_-intronic
CAediting_421410chr5_98918644_-intronic
CAediting_421411chr5_98918656_-intronic
CAediting_421412chr5_98918660_-intronic
CAediting_421413chr5_98918685_-intronic
CAediting_421414chr5_98921895_-intronic
CAediting_421415chr5_98921990_-intronic
CAediting_421416chr5_98923450_-intronic
CAediting_421417chr5_98923518_-intronic
CAediting_421418chr5_98923532_-intronic
CAediting_421419chr5_98923583_-intronic
CAediting_421420chr5_98923584_-intronic
CAediting_421421chr5_98923590_-intronic
CAediting_421422chr5_98923591_-intronic
CAediting_421423chr5_98923592_-intronic
CAediting_421424chr5_98923593_-intronic
CAediting_421425chr5_98923596_-intronic
CAediting_421426chr5_98923608_-intronic
CAediting_421427chr5_98923615_-intronic
CAediting_421428chr5_98923694_-intronic
CAediting_421429chr5_98923997_-intronic
CAediting_421430chr5_98923999_-intronic
CAediting_421431chr5_98924063_-intronic
CAediting_421432chr5_98924150_-intronic
CAediting_421433chr5_98924161_-intronic
CAediting_421434chr5_98924162_-intronic
CAediting_421435chr5_98924163_-intronic
CAediting_421436chr5_98924189_-intronic
CAediting_421437chr5_98924199_-intronic
CAediting_421438chr5_98924215_-intronic
CAediting_421439chr5_98925296_-intronic
CAediting_421440chr5_98925305_-intronic
CAediting_421441chr5_98925322_-intronic
CAediting_421442chr5_98925323_-intronic
CAediting_421443chr5_98925343_-intronic
CAediting_421444chr5_98925937_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_421295chr5_98861598_-SINEAluAluSc8
CAediting_421296chr5_98861607_-SINEAluAluSc8
CAediting_421297chr5_98861610_-SINEAluAluSc8
CAediting_421298chr5_98861613_-SINEAluAluSc8
CAediting_421299chr5_98861617_-SINEAluAluSc8
CAediting_421300chr5_98861626_-SINEAluAluSc8
CAediting_421301chr5_98861630_-SINEAluAluSc8
CAediting_421302chr5_98861638_-SINEAluAluSc8
CAediting_421303chr5_98861640_-SINEAluAluSc8
CAediting_421304chr5_98861650_-SINEAluAluSc8
CAediting_421305chr5_98861695_-SINEAluAluSc8
CAediting_421306chr5_98861708_-SINEAluAluSc8
CAediting_421307chr5_98861728_-SINEAluAluSc8
CAediting_421308chr5_98861736_-SINEAluAluSc8
CAediting_421309chr5_98861766_-SINEAluAluSc8
CAediting_421312chr5_98861913_-SINEAluAluSz
CAediting_421313chr5_98861965_-SINEAluAluSz
CAediting_421314chr5_98861969_-SINEAluAluSz
CAediting_421315chr5_98861974_-SINEAluAluSz
CAediting_421316chr5_98861991_-SINEAluAluSz
CAediting_421317chr5_98862033_-SINEAluAluSz
CAediting_421318chr5_98862045_-SINEAluAluSz
CAediting_421319chr5_98862057_-SINEAluAluSz
CAediting_421322chr5_98864573_-SINEAluAluJr
CAediting_421323chr5_98864600_-SINEAluAluJr
CAediting_421324chr5_98864609_-SINEAluAluJr
CAediting_421325chr5_98864611_-SINEAluAluJr
CAediting_421326chr5_98864612_-SINEAluAluJr
CAediting_421327chr5_98867863_-SINEAluAluSq2
CAediting_421328chr5_98867868_-SINEAluAluSq2
CAediting_421329chr5_98867870_-SINEAluAluSq2
CAediting_421330chr5_98867875_-SINEAluAluSq2
CAediting_421331chr5_98867886_-SINEAluAluSq2
CAediting_421332chr5_98867899_-SINEAluAluSq2
CAediting_421333chr5_98867914_-SINEAluAluSq2
CAediting_421334chr5_98867931_-SINEAluAluSq2
CAediting_421335chr5_98867935_-SINEAluAluSq2
CAediting_421336chr5_98867940_-SINEAluAluSq2
CAediting_421337chr5_98867941_-SINEAluAluSq2
CAediting_421338chr5_98867950_-SINEAluAluSq2
CAediting_421339chr5_98867966_-SINEAluAluSq2
CAediting_421340chr5_98867967_-SINEAluAluSq2
CAediting_421341chr5_98867976_-SINEAluAluSq2
CAediting_421342chr5_98867985_-SINEAluAluSq2
CAediting_421343chr5_98868072_-SINEAluAluSq2
CAediting_421344chr5_98868277_-SINEAluAluJb
CAediting_421345chr5_98868281_-SINEAluAluJb
CAediting_421346chr5_98868301_-SINEAluAluJb
CAediting_421347chr5_98872998_-SINEAluAluJr
CAediting_421348chr5_98873046_-SINEAluAluJr
CAediting_421349chr5_98883938_-SINEAluAluSx
CAediting_421350chr5_98883993_-SINEAluAluSx
CAediting_421351chr5_98884279_-SINEAluAluY
CAediting_421352chr5_98884341_-SINEAluAluY
CAediting_421353chr5_98884346_-SINEAluAluY
CAediting_421354chr5_98884347_-SINEAluAluY
CAediting_421355chr5_98884771_-SINEAluAluJr
CAediting_421356chr5_98884779_-SINEAluAluJr
CAediting_421357chr5_98884809_-SINEAluAluJr
CAediting_421358chr5_98884854_-SINEAluAluJr
CAediting_421359chr5_98884978_-SINEAluAluJr
CAediting_421360chr5_98884983_-SINEAluAluJr
CAediting_421361chr5_98884999_-SINEAluAluJr
CAediting_421362chr5_98885018_-SINEAluAluJr
CAediting_421363chr5_98885021_-SINEAluAluJr
CAediting_421364chr5_98885023_-SINEAluAluJr
CAediting_421365chr5_98885141_-SINEAluAluSx
CAediting_421366chr5_98885157_-SINEAluAluSx
CAediting_421367chr5_98885226_-SINEAluAluSx
CAediting_421368chr5_98885244_-SINEAluAluSx
CAediting_421369chr5_98885284_-SINEAluAluSx
CAediting_421370chr5_98891171_-SINEAluAluSx1
CAediting_421371chr5_98891269_-SINEAluAluSx1
CAediting_421372chr5_98891271_-SINEAluAluSx1
CAediting_421373chr5_98891284_-SINEAluAluSx1
CAediting_421374chr5_98891309_-SINEAluAluSx1
CAediting_421375chr5_98891314_-SINEAluAluSx1
CAediting_421376chr5_98891350_-SINEAluAluSx1
CAediting_421377chr5_98891554_-SINEAluAluSz6
CAediting_421378chr5_98891566_-SINEAluAluSz6
CAediting_421379chr5_98891619_-SINEAluAluSz6
CAediting_421380chr5_98891711_-SINEAluAluSz6
CAediting_421381chr5_98891749_-SINEAluAluSz6
CAediting_421382chr5_98891754_-SINEAluAluSz6
CAediting_421383chr5_98891765_-SINEAluAluSz6
CAediting_421384chr5_98891775_-SINEAluAluSz6
CAediting_421385chr5_98894960_-SINEAluAluSp
CAediting_421386chr5_98894986_-SINEAluAluSp
CAediting_421387chr5_98894989_-SINEAluAluSp
CAediting_421388chr5_98895000_-SINEAluAluSp
CAediting_421389chr5_98895003_-SINEAluAluSp
CAediting_421390chr5_98895587_-SINEAluAluSx1
CAediting_421391chr5_98895641_-SINEAluAluSx1
CAediting_421392chr5_98895645_-SINEAluAluSx1
CAediting_421393chr5_98895671_-SINEAluAluSx1
CAediting_421394chr5_98895677_-SINEAluAluSx1
CAediting_421395chr5_98900273_-SINEAluAluY
CAediting_421396chr5_98916192_-SINEAluAluSq
CAediting_421397chr5_98918186_-SINEAluAluY
CAediting_421398chr5_98918190_-SINEAluAluY
CAediting_421399chr5_98918202_-SINEAluAluY
CAediting_421400chr5_98918222_-SINEAluAluY
CAediting_421401chr5_98918233_-SINEAluAluY
CAediting_421402chr5_98918274_-SINEAluAluY
CAediting_421403chr5_98918288_-SINEAluAluY
CAediting_421404chr5_98918293_-SINEAluAluY
CAediting_421405chr5_98918294_-SINEAluAluY
CAediting_421406chr5_98918296_-SINEAluAluY
CAediting_421407chr5_98918355_-SINEAluAluY
CAediting_421408chr5_98918611_-SINEAluAluSc5
CAediting_421409chr5_98918640_-SINEAluAluSc5
CAediting_421410chr5_98918644_-SINEAluAluSc5
CAediting_421411chr5_98918656_-SINEAluAluSc5
CAediting_421412chr5_98918660_-SINEAluAluSc5
CAediting_421413chr5_98918685_-SINEAluAluSc5
CAediting_421414chr5_98921895_-SINEAluAluSg7
CAediting_421415chr5_98921990_-SINEAluAluSg7
CAediting_421416chr5_98923450_-SINEAluAluSp
CAediting_421417chr5_98923518_-SINEAluAluSp
CAediting_421418chr5_98923532_-SINEAluAluSp
CAediting_421419chr5_98923583_-SINEAluAluSp
CAediting_421420chr5_98923584_-SINEAluAluSp
CAediting_421421chr5_98923590_-SINEAluAluSp
CAediting_421422chr5_98923591_-SINEAluAluSp
CAediting_421423chr5_98923592_-SINEAluAluSp
CAediting_421424chr5_98923593_-SINEAluAluSp
CAediting_421425chr5_98923596_-SINEAluAluSp
CAediting_421426chr5_98923608_-SINEAluAluSp
CAediting_421427chr5_98923615_-SINEAluAluSp
CAediting_421428chr5_98923694_-SINEAluAluSp
CAediting_421429chr5_98923997_-SINEAluAluJb
CAediting_421430chr5_98923999_-SINEAluAluJb
CAediting_421431chr5_98924063_-SINEAluAluJb
CAediting_421432chr5_98924150_-SINEAluAluJb
CAediting_421433chr5_98924161_-SINEAluAluJb
CAediting_421434chr5_98924162_-SINEAluAluJb
CAediting_421435chr5_98924163_-SINEAluAluJb
CAediting_421436chr5_98924189_-SINEAluAluJb
CAediting_421437chr5_98924199_-SINEAluAluJb
CAediting_421438chr5_98924215_-SINEAluAluJb
CAediting_421439chr5_98925296_-SINEAluAluJo
CAediting_421440chr5_98925305_-SINEAluAluJo
CAediting_421441chr5_98925322_-SINEAluAluJo
CAediting_421442chr5_98925323_-SINEAluAluJo
CAediting_421443chr5_98925343_-SINEAluAluJo
CAediting_421444chr5_98925937_-DNAhAT-CharlieMER3

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RNA A-to-I editing events in the alternative splicing sites for CHD1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000153922.9.CHD1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000153922.9.CHD1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHD1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CHD1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CHD1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000153922.9ENST00000614616hsa-miR-605-3p98856095988561017mer-m89885609498856116154-16.95
CAediting_1306324chr19_13836464_-ENSG00000153922.9ENST00000614616hsa-miR-27a-3p98855897988559037mer-m89885589698855917151-14.99
CAediting_393chr1_1167164_+ENSG00000153922.9ENST00000614616hsa-miR-200b-3p98855053988550597mer-1a9885505398855074140-12.67
CAediting_393chr1_1167164_+ENSG00000153922.9ENST00000614616hsa-miR-200b-3p98854435988544406mer9885443498854457146-11.17
CAediting_748296chr10_51299626_+ENSG00000153922.9ENST00000284049hsa-miR-605-3p98856095988561017mer-m89885609498856116154-16.95
CAediting_1306324chr19_13836464_-ENSG00000153922.9ENST00000284049hsa-miR-27a-3p98855897988559037mer-m89885589698855917151-14.99
CAediting_117844chr1_162342605_+ENSG00000153922.9ENST00000614616hsa-miR-556-3p98855334988553418mer-1a9885533498855355140-8.52
CAediting_396018chr5_1062918_-ENSG00000153922.9ENST00000614616hsa-miR-463598855159988551657mer-m89885515898855181145-14.38
CAediting_524911chr7_5495852_-ENSG00000153922.9ENST00000614616hsa-miR-589-3p98855454988554607mer-m89885545398855474151-18.61
CAediting_573000chr7_92204081_-ENSG00000153922.9ENST00000614616hsa-miR-1285-5p98855479988554868mer-1a9885547998855499150-11.7
CAediting_117844chr1_162342605_+ENSG00000153922.9ENST00000284049hsa-miR-556-3p98855334988553418mer-1a9885533498855355140-8.52
CAediting_524911chr7_5495852_-ENSG00000153922.9ENST00000284049hsa-miR-589-3p98855454988554607mer-m89885545398855474151-18.61
CAediting_573000chr7_92204081_-ENSG00000153922.9ENST00000284049hsa-miR-1285-5p98855479988554868mer-1a9885547998855499150-11.7

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000153922.9ENST00000614616hsa-miR-200b-3p98854797988548026mer9885479698854815141-11.66
CAediting_228905chr2_188297554_+ENSG00000153922.9ENST00000614616hsa-miR-561-3p98854487988544937mer-m89885448698854509149-5.2

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CHD1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CHD1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_421320chr5_98862230_-0.03468759046076250.260439089017841....
STADCAediting_421337chr5_98867941_-....0.003356275218360320.330224750873501

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Relation with cancer stages for CHD1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_421330chr5_98867875_-0.005977455157935930.391152111719044
ESCApathologic_stageCAediting_421336chr5_98867940_-0.03506217586534730.257968251115294
STADpathologic_stageCAediting_421336chr5_98867940_-0.02161341323698030.206987033906616

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Relation with survival for CHD1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CHD1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CHD1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CHD1C0009402Colorectal Carcinoma1CTD_human
CHD1C0009404Colorectal Neoplasms1CTD_human
CHD1C0025261Memory Disorders1CTD_human
CHD1C0033578Prostatic Neoplasms1CTD_human
CHD1C0233794Memory impairment1CTD_human
CHD1C0376358Malignant neoplasm of prostate1CTD_human
CHD1C0751292Age-Related Memory Disorders1CTD_human
CHD1C0751293Memory Disorder, Semantic1CTD_human
CHD1C0751294Memory Disorder, Spatial1CTD_human
CHD1C0751295Memory Loss1CTD_human
CHD1C4540131PILAROWSKI-BJORNSSON SYNDROME1GENOMICS_ENGLAND;ORPHANET;UNIPROT