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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SLC27A5 (CAeditome ID:10998)

Gene summary for SLC27A5

check button Gene summary
Gene informationGene symbol

SLC27A5

Gene ID

10998

Gene namesolute carrier family 27 member 5
SynonymsACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2
Cytomap

19q13.43

Type of geneprotein-coding
Descriptionbile acyl-CoA synthetaseBA-CoA ligaseVLACS-relatedbile acid-CoA ligasecholate--CoA ligasefatty acid transport protein 5fatty-acid-Coenzyme A ligase, very long-chain 3solute carrier family 27 (fatty acid transporter), member 5very long-chain acyl-C
Modification date20210518
UniProtAcc

Q9Y2P5

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SLC27A5

GO:0005324

Bile acyl-CoA synthetase

20530735

SLC27A5

GO:0031957

Bile acyl-CoA synthetase

10479480

SLC27A5

GO:0031957

Bile acyl-CoA synthetase

11980911

SLC27A5

GO:0047747

Bile acyl-CoA synthetase

10749848

SLC27A5

GO:0000038

Bile acyl-CoA synthetase

10479480

SLC27A5

GO:0006699

Bile acyl-CoA synthetase

11980911

SLC27A5

GO:0005783

Bile acyl-CoA synthetase

10479480

SLC27A5

GO:0030176

Bile acyl-CoA synthetase

11980911


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RNA A-to-I events for SLC27A5

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000083807.8
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1397784(58481890, -), CAediting_1397785(58481891, -), CAediting_1397786(58481905, -), CAediting_1397787(58481932, -), CAediting_1397788(58481958, -), CAediting_1397789(58482066, -), CAediting_1397790(58483303, -), CAediting_1397791(58483365, -), CAediting_1397792(58483367, -), CAediting_1397793(58483381, -), CAediting_1397794(58483426, -), CAediting_1397795(58483431, -), CAediting_1397796(58483462, -), CAediting_1397797(58483466, -), CAediting_1397798(58483482, -), CAediting_1397799(58483535, -), CAediting_1397800(58483555, -), CAediting_1397801(58483567, -), CAediting_1397802(58483588, -), CAediting_1397803(58483593, -), CAediting_1397804(58483636, -), CAediting_1397805(58483644, -), CAediting_1397806(58484219, -), CAediting_1397807(58484865, -), CAediting_1397808(58485043, -), CAediting_1397809(58485496, -), CAediting_1397810(58485974, -), CAediting_1397811(58486001, -), CAediting_1397812(58486009, -), CAediting_1397813(58486041, -), CAediting_1397814(58486123, -), CAediting_1397815(58486190, -), CAediting_1397816(58486221, -), CAediting_1397817(58489778, -), CAediting_1397818(58489848, -), CAediting_1397819(58489888, -), CAediting_1397820(58490048, -), CAediting_1397821(58490060, -), CAediting_1397822(58490074, -), CAediting_1397823(58490221, -), CAediting_1397824(58490222, -), CAediting_1397825(58490377, -), CAediting_1397826(58490378, -), CAediting_1397827(58490467, -), CAediting_1397828(58490471, -), CAediting_1397829(58491224, -), CAediting_1397830(58492546, -), CAediting_1397831(58492548, -), CAediting_1397832(58492562, -), CAediting_1397833(58492570, -), CAediting_1397834(58492613, -), CAediting_1397835(58492617, -), CAediting_1397836(58492625, -), CAediting_1397837(58492632, -), CAediting_1397838(58492692, -), CAediting_1397839(58493504, -), CAediting_1397840(58494249, -), CAediting_1397841(58494265, -), CAediting_1397842(58495015, -), CAediting_1397843(58495016, -), CAediting_1397844(58495029, -), CAediting_1397845(58495046, -), CAediting_1397846(58495056, -), CAediting_1397847(58495062, -), CAediting_1397848(58495126, -), CAediting_1397849(58495146, -), CAediting_1397850(58495200, -), CAediting_1397851(58495323, -), CAediting_1397852(58495348, -), CAediting_1397853(58495391, -), CAediting_1397854(58495999, -), CAediting_1397855(58496000, -), CAediting_1397856(58496415, -), CAediting_1397857(58496437, -), CAediting_1397858(58496552, -), CAediting_1397859(58501750, -), CAediting_1397860(58501794, -), CAediting_1397861(58501798, -), CAediting_1397862(58501811, -), CAediting_1397863(58501812, -), CAediting_1397864(58501834, -), CAediting_1397865(58501838, -), CAediting_1397866(58501841, -), CAediting_1397867(58501844, -), CAediting_1397868(58501847, -), CAediting_1397869(58501850, -), CAediting_1397870(58501851, -), CAediting_1397871(58501895, -), CAediting_1397872(58501896, -), CAediting_1397873(58501904, -), CAediting_1397874(58501950, -), CAediting_1397875(58501951, -), CAediting_1397876(58501967, -), CAediting_1397877(58501969, -), CAediting_1397878(58503415, -), CAediting_1397879(58503425, -), CAediting_1397880(58503434, -), CAediting_1397881(58503459, -), CAediting_1397882(58503601, -), CAediting_1397883(58503603, -), CAediting_1397884(58503868, -), CAediting_1397885(58503895, -), CAediting_1397886(58504015, -), CAediting_1397887(58504032, -), CAediting_1397888(58504881, -), CAediting_1397889(58504894, -), CAediting_1397890(58505172, -), CAediting_1397891(58505176, -), CAediting_1397892(58505185, -), CAediting_1397893(58506487, -),

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RNA editing positional annotations for SLC27A5 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1397784chr19_58481890_-intronic
CAediting_1397785chr19_58481891_-intronic
CAediting_1397786chr19_58481905_-intronic
CAediting_1397787chr19_58481932_-intronic
CAediting_1397788chr19_58481958_-intronic
CAediting_1397789chr19_58482066_-intronic
CAediting_1397790chr19_58483303_-intronic
CAediting_1397791chr19_58483365_-intronic
CAediting_1397792chr19_58483367_-intronic
CAediting_1397793chr19_58483381_-intronic
CAediting_1397794chr19_58483426_-intronic
CAediting_1397795chr19_58483431_-intronic
CAediting_1397796chr19_58483462_-intronic
CAediting_1397797chr19_58483466_-intronic
CAediting_1397798chr19_58483482_-intronic
CAediting_1397799chr19_58483535_-UTR3
CAediting_1397800chr19_58483555_-UTR3
CAediting_1397801chr19_58483567_-UTR3
CAediting_1397802chr19_58483588_-UTR3
CAediting_1397803chr19_58483593_-UTR3
CAediting_1397804chr19_58483636_-UTR3
CAediting_1397805chr19_58483644_-UTR3
CAediting_1397806chr19_58484219_-intronic
CAediting_1397807chr19_58484865_-intronic
CAediting_1397808chr19_58485043_-intronic
CAediting_1397809chr19_58485496_-intronic
CAediting_1397810chr19_58485974_-intronic
CAediting_1397811chr19_58486001_-intronic
CAediting_1397812chr19_58486009_-intronic
CAediting_1397813chr19_58486041_-intronic
CAediting_1397814chr19_58486123_-intronic
CAediting_1397815chr19_58486190_-intronic
CAediting_1397816chr19_58486221_-intronic
CAediting_1397817chr19_58489778_-intronic
CAediting_1397818chr19_58489848_-intronic
CAediting_1397819chr19_58489888_-intronic
CAediting_1397820chr19_58490048_-intronic
CAediting_1397821chr19_58490060_-intronic
CAediting_1397822chr19_58490074_-intronic
CAediting_1397823chr19_58490221_-intronic
CAediting_1397824chr19_58490222_-intronic
CAediting_1397825chr19_58490377_-intronic
CAediting_1397826chr19_58490378_-intronic
CAediting_1397827chr19_58490467_-intronic
CAediting_1397828chr19_58490471_-intronic
CAediting_1397829chr19_58491224_-intronic
CAediting_1397830chr19_58492546_-intronic
CAediting_1397831chr19_58492548_-intronic
CAediting_1397832chr19_58492562_-intronic
CAediting_1397833chr19_58492570_-intronic
CAediting_1397834chr19_58492613_-intronic
CAediting_1397835chr19_58492617_-intronic
CAediting_1397836chr19_58492625_-intronic
CAediting_1397837chr19_58492632_-intronic
CAediting_1397838chr19_58492692_-intronic
CAediting_1397839chr19_58493504_-intronic
CAediting_1397840chr19_58494249_-intronic
CAediting_1397841chr19_58494265_-intronic
CAediting_1397842chr19_58495015_-intronic
CAediting_1397843chr19_58495016_-intronic
CAediting_1397844chr19_58495029_-intronic
CAediting_1397845chr19_58495046_-intronic
CAediting_1397846chr19_58495056_-intronic
CAediting_1397847chr19_58495062_-intronic
CAediting_1397848chr19_58495126_-intronic
CAediting_1397849chr19_58495146_-intronic
CAediting_1397850chr19_58495200_-intronic
CAediting_1397851chr19_58495323_-intronic
CAediting_1397852chr19_58495348_-intronic
CAediting_1397853chr19_58495391_-intronic
CAediting_1397854chr19_58495999_-intronic
CAediting_1397855chr19_58496000_-intronic
CAediting_1397856chr19_58496415_-intronic
CAediting_1397857chr19_58496437_-intronic
CAediting_1397858chr19_58496552_-intronic
CAediting_1397859chr19_58501750_-ncRNA_intronic
CAediting_1397860chr19_58501794_-ncRNA_intronic
CAediting_1397861chr19_58501798_-ncRNA_intronic
CAediting_1397862chr19_58501811_-ncRNA_intronic
CAediting_1397863chr19_58501812_-ncRNA_intronic
CAediting_1397864chr19_58501834_-ncRNA_intronic
CAediting_1397865chr19_58501838_-ncRNA_intronic
CAediting_1397866chr19_58501841_-ncRNA_intronic
CAediting_1397867chr19_58501844_-ncRNA_intronic
CAediting_1397868chr19_58501847_-ncRNA_intronic
CAediting_1397869chr19_58501850_-ncRNA_intronic
CAediting_1397870chr19_58501851_-ncRNA_intronic
CAediting_1397871chr19_58501895_-ncRNA_intronic
CAediting_1397872chr19_58501896_-ncRNA_intronic
CAediting_1397873chr19_58501904_-ncRNA_intronic
CAediting_1397874chr19_58501950_-ncRNA_intronic
CAediting_1397875chr19_58501951_-ncRNA_intronic
CAediting_1397876chr19_58501967_-ncRNA_intronic
CAediting_1397877chr19_58501969_-ncRNA_intronic
CAediting_1397878chr19_58503415_-ncRNA_intronic
CAediting_1397879chr19_58503425_-ncRNA_intronic
CAediting_1397880chr19_58503434_-ncRNA_intronic
CAediting_1397881chr19_58503459_-ncRNA_intronic
CAediting_1397882chr19_58503601_-ncRNA_intronic
CAediting_1397883chr19_58503603_-ncRNA_intronic
CAediting_1397884chr19_58503868_-ncRNA_intronic
CAediting_1397885chr19_58503895_-ncRNA_intronic
CAediting_1397886chr19_58504015_-ncRNA_intronic
CAediting_1397887chr19_58504032_-ncRNA_intronic
CAediting_1397888chr19_58504881_-ncRNA_intronic
CAediting_1397889chr19_58504894_-ncRNA_intronic
CAediting_1397890chr19_58505172_-ncRNA_intronic
CAediting_1397891chr19_58505176_-ncRNA_intronic
CAediting_1397892chr19_58505185_-ncRNA_intronic
CAediting_1397893chr19_58506487_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1397784chr19_58481890_-SINEAluAluYj4
CAediting_1397785chr19_58481891_-SINEAluAluYj4
CAediting_1397786chr19_58481905_-SINEAluAluYj4
CAediting_1397787chr19_58481932_-SINEAluAluYj4
CAediting_1397788chr19_58481958_-SINEAluAluYj4
CAediting_1397789chr19_58482066_-SINEAluAluYj4
CAediting_1397790chr19_58483303_-SINEAluAluSz
CAediting_1397791chr19_58483365_-SINEAluAluSz
CAediting_1397792chr19_58483367_-SINEAluAluSz
CAediting_1397793chr19_58483381_-SINEAluAluSz
CAediting_1397794chr19_58483426_-SINEAluAluSz
CAediting_1397795chr19_58483431_-SINEAluAluSz
CAediting_1397796chr19_58483462_-SINEAluAluSz
CAediting_1397797chr19_58483466_-SINEAluAluSz
CAediting_1397798chr19_58483482_-SINEAluAluSz
CAediting_1397799chr19_58483535_-SINEAluAluJr
CAediting_1397800chr19_58483555_-SINEAluAluJr
CAediting_1397801chr19_58483567_-SINEAluAluJr
CAediting_1397802chr19_58483588_-SINEAluAluJr
CAediting_1397803chr19_58483593_-SINEAluAluJr
CAediting_1397804chr19_58483636_-SINEAluAluJr
CAediting_1397805chr19_58483644_-SINEAluAluJr
CAediting_1397806chr19_58484219_-SINEAluAluJb
CAediting_1397807chr19_58484865_-SINEAluAluJb
CAediting_1397808chr19_58485043_-SINEAluAluJb
CAediting_1397809chr19_58485496_-SINEAluAluSx
CAediting_1397810chr19_58485974_-SINEAluAluJb
CAediting_1397811chr19_58486001_-SINEAluAluJb
CAediting_1397812chr19_58486009_-SINEAluAluJb
CAediting_1397813chr19_58486041_-SINEAluAluJb
CAediting_1397814chr19_58486123_-SINEAluAluSc8
CAediting_1397815chr19_58486190_-SINEAluAluSc8
CAediting_1397816chr19_58486221_-SINEAluAluSc8
CAediting_1397817chr19_58489778_-SINEAluAluSg
CAediting_1397818chr19_58489848_-SINEAluAluSg
CAediting_1397819chr19_58489888_-SINEAluAluSg
CAediting_1397820chr19_58490048_-SINEAluAluJr
CAediting_1397821chr19_58490060_-SINEAluAluJr
CAediting_1397822chr19_58490074_-SINEAluAluJr
CAediting_1397823chr19_58490221_-SINEAluAluJr
CAediting_1397824chr19_58490222_-SINEAluAluJr
CAediting_1397825chr19_58490377_-SINEAluAluSx
CAediting_1397826chr19_58490378_-SINEAluAluSx
CAediting_1397827chr19_58490467_-SINEAluAluSx
CAediting_1397828chr19_58490471_-SINEAluAluSx
CAediting_1397829chr19_58491224_-SINEAluAluSz6
CAediting_1397830chr19_58492546_-SINEAluAluY
CAediting_1397831chr19_58492548_-SINEAluAluY
CAediting_1397832chr19_58492562_-SINEAluAluY
CAediting_1397833chr19_58492570_-SINEAluAluY
CAediting_1397834chr19_58492613_-SINEAluAluY
CAediting_1397835chr19_58492617_-SINEAluAluY
CAediting_1397836chr19_58492625_-SINEAluAluY
CAediting_1397837chr19_58492632_-SINEAluAluY
CAediting_1397838chr19_58492692_-SINEAluAluY
CAediting_1397839chr19_58493504_-SINEAluAluSx
CAediting_1397840chr19_58494249_-SINEAluAluSg4
CAediting_1397841chr19_58494265_-SINEAluAluSg4
CAediting_1397842chr19_58495015_-SINEAluAluJr4
CAediting_1397843chr19_58495016_-SINEAluAluJr4
CAediting_1397844chr19_58495029_-SINEAluAluJr4
CAediting_1397845chr19_58495046_-SINEAluAluJr4
CAediting_1397846chr19_58495056_-SINEAluAluJr4
CAediting_1397847chr19_58495062_-SINEAluAluJr4
CAediting_1397848chr19_58495126_-SINEAluAluJr4
CAediting_1397849chr19_58495146_-SINEAluAluJr4
CAediting_1397850chr19_58495200_-SINEAluAluJr4
CAediting_1397851chr19_58495323_-SINEAluAluSc
CAediting_1397852chr19_58495348_-SINEAluAluSc
CAediting_1397853chr19_58495391_-SINEAluAluSc
CAediting_1397854chr19_58495999_-SINEAluAluSx
CAediting_1397855chr19_58496000_-SINEAluAluSx
CAediting_1397856chr19_58496415_-SINEAluAluY
CAediting_1397857chr19_58496437_-SINEAluAluY
CAediting_1397858chr19_58496552_-SINEAluAluY
CAediting_1397859chr19_58501750_-SINEAluAluSx1
CAediting_1397860chr19_58501794_-SINEAluAluSx1
CAediting_1397861chr19_58501798_-SINEAluAluSx1
CAediting_1397862chr19_58501811_-SINEAluAluSx1
CAediting_1397863chr19_58501812_-SINEAluAluSx1
CAediting_1397864chr19_58501834_-SINEAluAluSx1
CAediting_1397865chr19_58501838_-SINEAluAluSx1
CAediting_1397866chr19_58501841_-SINEAluAluSx1
CAediting_1397867chr19_58501844_-SINEAluAluSx1
CAediting_1397868chr19_58501847_-SINEAluAluSx1
CAediting_1397869chr19_58501850_-SINEAluAluSx1
CAediting_1397870chr19_58501851_-SINEAluAluSx1
CAediting_1397871chr19_58501895_-SINEAluAluSx1
CAediting_1397872chr19_58501896_-SINEAluAluSx1
CAediting_1397873chr19_58501904_-SINEAluAluSx1
CAediting_1397874chr19_58501950_-SINEAluAluSx1
CAediting_1397875chr19_58501951_-SINEAluAluSx1
CAediting_1397876chr19_58501967_-SINEAluAluSx1
CAediting_1397877chr19_58501969_-SINEAluAluSx1
CAediting_1397878chr19_58503415_-SINEAluAluSx
CAediting_1397879chr19_58503425_-SINEAluAluSx
CAediting_1397880chr19_58503434_-SINEAluAluSx
CAediting_1397881chr19_58503459_-SINEAluAluSx
CAediting_1397882chr19_58503601_-SINEAluAluSx
CAediting_1397883chr19_58503603_-SINEAluAluSx
CAediting_1397884chr19_58503868_-SINEAluAluSz6
CAediting_1397885chr19_58503895_-SINEAluAluSz6
CAediting_1397886chr19_58504015_-SINEAluAluSz6
CAediting_1397887chr19_58504032_-SINEAluAluSz6
CAediting_1397888chr19_58504881_-SINEAluAluY
CAediting_1397889chr19_58504894_-SINEAluAluY
CAediting_1397890chr19_58505172_-SINEAluAluSx1
CAediting_1397891chr19_58505176_-SINEAluAluSx1
CAediting_1397892chr19_58505185_-SINEAluAluSx1
CAediting_1397893chr19_58506487_-SINEAluAluSz6

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RNA A-to-I editing events in the alternative splicing sites for SLC27A5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1397805chr19_58483644_-58483644:584836663SS3+0iTCCGTATTTTTTTTTTCCAGACA9.26TCCGTATTTTTTTTTTCCAGACG9.43

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000083807.8.SLC27A5.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000083807.8.SLC27A5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC27A5

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SLC27A5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SLC27A5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1397799chr19_58483535_-ENSG00000083807.8ENST00000595851hsa-miR-17-3p58483532584835387mer-m85848353258483553142.00-23.02
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-6765-5p58483550584835567mer-m85848354958483573151.00-24.77
CAediting_1397801chr19_58483567_-ENSG00000083807.8ENST00000595851hsa-miR-1199-5p58483567584835737mer-m85848356658483585156.00-28.57
CAediting_1397801chr19_58483567_-ENSG00000083807.8ENST00000595851hsa-miR-3622a-3p58483563584835708mer-1a5848356358483584148.00-19.86
CAediting_1397801chr19_58483567_-ENSG00000083807.8ENST00000595851hsa-miR-3622b-3p58483563584835708mer-1a5848356358483583157.00-23.68
CAediting_1397801chr19_58483567_-ENSG00000083807.8ENST00000595851hsa-miR-6751-3p58483567584835737mer-m85848356658483586141.00-13.15

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-1233-5p58483554584835607mer-m85848355358483578146-25
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-1233-5p58483554584835607mer-m85848355358483578146-25
CAediting_1397799chr19_58483535_-ENSG00000083807.8ENST00000595851hsa-miR-20b-3p58483532584835387mer-m85848353258483555148-17.01
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-30c-1-3p58483555584835617mer-m85848355458483573146-14.33
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-30c-2-3p58483555584835617mer-m85848355458483575145-16.49
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-6778-5p58483554584835607mer-m85848355358483578149-27.16
CAediting_1397800chr19_58483555_-ENSG00000083807.8ENST00000595851hsa-miR-6788-5p58483555584835617mer-m85848355458483574145-15.42

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000083807.8ENST00000594786hsa-miR-624-3p58498368584983747mer-1a5849836858498390142-17.84
CAediting_1054808chr15_66496985_-ENSG00000083807.8ENST00000595851hsa-miR-451258479763584797708mer-1a5847976358479784150-28.85
CAediting_1054808chr15_66496985_-ENSG00000083807.8ENST00000595851hsa-miR-451258480767584807737mer-m85848076658480787145-24.96
CAediting_1054808chr15_66496985_-ENSG00000083807.8ENST00000595851hsa-miR-451258480750584807567mer-m85848074958480771157-28.67
CAediting_1368054chr19_46709310_-ENSG00000083807.8ENST00000595851hsa-miR-320e58479968584799747mer-m85847996758479984145-19.36
CAediting_86358chr1_109598906_+ENSG00000083807.8ENST00000595851hsa-miR-197-5p58479604584796107mer-m85847960358479630154-30.93
CAediting_604450chr7_133034877_-ENSG00000083807.8ENST00000595851hsa-miR-365458479656584796638mer-1a5847965658479674141-16.37

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_580943chr7_100356700_+ENSG00000083807.8ENST00000595851hsa-miR-6840-3p58480355584803617mer-m85848035458480377154-27.03
CAediting_580943chr7_100356700_+ENSG00000083807.8ENST00000595851hsa-miR-6840-3p58480171584801777mer-m85848017058480192147-23.52

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SLC27A5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for SLC27A5

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LIHCCAediting_1397833chr19_58492570_-0.009324398285342870.262733506548598....
LIHCCAediting_1397835chr19_58492617_-1.87096169294798e-080.456222737428283....
GBMCAediting_1397835chr19_58492617_-....0.02851474984898130.292824838306891

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Relation with cancer stages for SLC27A5

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for SLC27A5

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
GBMCAediting_1397835chr19_58492617_-0.02598643725262960.023238371.0054

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RelatedDrugs for SLC27A5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SLC27A5

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SLC27A5C4274079Bile acid CoA ligase deficiency and defective amidation1ORPHANET