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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PAPOLA (CAeditome ID:10914)

Gene summary for PAPOLA

check button Gene summary
Gene informationGene symbol

PAPOLA

Gene ID

10914

Gene namepoly(A) polymerase alpha
SynonymsPAP|PAP-alpha
Cytomap

14q32.2

Type of geneprotein-coding
Descriptionpoly(A) polymerase alphapolynucleotide adenylyltransferase alpha
Modification date20210518
UniProtAcc

P51003

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PAPOLA

GO:0004652

Poly(A) polymerase alpha

7590244

PAPOLA

GO:0006378

Poly(A) polymerase alpha

19224921

PAPOLA

GO:0006378

Poly(A) polymerase alpha

7590244

PAPOLA

GO:0031440

Poly(A) polymerase alpha

19224921

PAPOLA

GO:0005654

Poly(A) polymerase alpha

0000052


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RNA A-to-I events for PAPOLA

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000090060.16
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1015268(96505930, +), CAediting_1015269(96505983, +), CAediting_1015270(96506084, +), CAediting_1015271(96506101, +), CAediting_1015272(96518671, +), CAediting_1015273(96518801, +), CAediting_1015274(96518825, +), CAediting_1015275(96518910, +), CAediting_1015276(96518946, +), CAediting_1015277(96519134, +), CAediting_1015278(96519180, +), CAediting_1015279(96521584, +), CAediting_1015280(96521624, +), CAediting_1015281(96521707, +), CAediting_1015282(96521747, +), CAediting_1015283(96522679, +), CAediting_1015284(96523690, +), CAediting_1015285(96523696, +), CAediting_1015286(96523734, +), CAediting_1015287(96523778, +), CAediting_1015288(96523796, +), CAediting_1015289(96523809, +), CAediting_1015290(96523823, +), CAediting_1015291(96523836, +), CAediting_1015292(96523849, +), CAediting_1015293(96523864, +), CAediting_1015294(96524543, +), CAediting_1015295(96525604, +), CAediting_1015296(96525609, +), CAediting_1015297(96525624, +), CAediting_1015298(96525630, +), CAediting_1015299(96525631, +), CAediting_1015300(96525647, +), CAediting_1015301(96526450, +), CAediting_1015302(96528650, +), CAediting_1015303(96529651, +), CAediting_1015304(96529663, +), CAediting_1015305(96529671, +), CAediting_1015306(96529672, +), CAediting_1015307(96529710, +), CAediting_1015308(96530255, +), CAediting_1015309(96530422, +), CAediting_1015310(96530436, +), CAediting_1015311(96530504, +), CAediting_1015312(96530529, +), CAediting_1015313(96530854, +), CAediting_1015314(96530908, +), CAediting_1015315(96530914, +), CAediting_1015316(96530971, +), CAediting_1015317(96531082, +), CAediting_1015318(96531119, +), CAediting_1015319(96531131, +), CAediting_1015320(96531143, +), CAediting_1015321(96531208, +), CAediting_1015322(96531263, +), CAediting_1015323(96531313, +), CAediting_1015324(96533586, +), CAediting_1015325(96533594, +), CAediting_1015326(96533598, +), CAediting_1015327(96533654, +), CAediting_1015328(96533684, +), CAediting_1015329(96533696, +), CAediting_1015330(96533697, +), CAediting_1015331(96533760, +), CAediting_1015332(96533764, +), CAediting_1015333(96533791, +), CAediting_1015334(96533815, +), CAediting_1015335(96549897, +), CAediting_1015336(96549898, +), CAediting_1015337(96549951, +), CAediting_1015338(96549971, +), CAediting_1015339(96550094, +), CAediting_1015340(96550104, +), CAediting_1015341(96553097, +), CAediting_1015342(96553120, +), CAediting_1015343(96553145, +), CAediting_1015344(96553146, +), CAediting_1015345(96553172, +), CAediting_1015346(96553175, +), CAediting_1015347(96553180, +), CAediting_1015348(96553241, +), CAediting_1015349(96553251, +), CAediting_1015350(96553257, +), CAediting_1015351(96553258, +), CAediting_1015352(96553263, +), CAediting_1015353(96553274, +), CAediting_1015354(96553280, +), CAediting_1015355(96553293, +), CAediting_1015356(96553303, +), CAediting_1015357(96553312, +), CAediting_1015358(96553314, +), CAediting_1015359(96553327, +), CAediting_1015360(96553335, +), CAediting_1015361(96553360, +), CAediting_1015362(96553390, +), CAediting_1015363(96553400, +), CAediting_1015364(96553404, +), CAediting_1015365(96553413, +), CAediting_1015366(96553420, +), CAediting_1015367(96553439, +), CAediting_1015368(96553456, +), CAediting_1015369(96553468, +), CAediting_1015370(96553476, +), CAediting_1015371(96553556, +), CAediting_1015372(96553563, +), CAediting_1015373(96553566, +), CAediting_1015374(96553606, +), CAediting_1015375(96553613, +), CAediting_1015376(96553630, +), CAediting_1015377(96553642, +), CAediting_1015378(96553712, +), CAediting_1015379(96553746, +), CAediting_1015380(96557011, +), CAediting_1015381(96559714, +), CAediting_1015382(96559718, +), CAediting_1015383(96559731, +), CAediting_1015384(96561914, +), CAediting_1015385(96564218, +), CAediting_1015386(96564226, +), CAediting_1015387(96564287, +), CAediting_1015388(96564289, +), CAediting_1015389(96564298, +), CAediting_1015390(96564306, +), CAediting_1015391(96564307, +), CAediting_1015392(96564310, +), CAediting_1015393(96564313, +), CAediting_1015394(96564328, +), CAediting_1015395(96567072, +),

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RNA editing positional annotations for PAPOLA using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1015268chr14_96505930_+ncRNA_intronic
CAediting_1015269chr14_96505983_+ncRNA_intronic
CAediting_1015270chr14_96506084_+ncRNA_intronic
CAediting_1015271chr14_96506101_+ncRNA_intronic
CAediting_1015272chr14_96518671_+ncRNA_intronic
CAediting_1015273chr14_96518801_+ncRNA_intronic
CAediting_1015274chr14_96518825_+ncRNA_intronic
CAediting_1015275chr14_96518910_+ncRNA_intronic
CAediting_1015276chr14_96518946_+ncRNA_intronic
CAediting_1015277chr14_96519134_+ncRNA_intronic
CAediting_1015278chr14_96519180_+ncRNA_intronic
CAediting_1015279chr14_96521584_+ncRNA_intronic
CAediting_1015280chr14_96521624_+ncRNA_intronic
CAediting_1015281chr14_96521707_+ncRNA_intronic
CAediting_1015282chr14_96521747_+ncRNA_intronic
CAediting_1015283chr14_96522679_+ncRNA_intronic
CAediting_1015284chr14_96523690_+ncRNA_intronic
CAediting_1015285chr14_96523696_+ncRNA_intronic
CAediting_1015286chr14_96523734_+ncRNA_intronic
CAediting_1015287chr14_96523778_+ncRNA_intronic
CAediting_1015288chr14_96523796_+ncRNA_intronic
CAediting_1015289chr14_96523809_+ncRNA_intronic
CAediting_1015290chr14_96523823_+ncRNA_intronic
CAediting_1015291chr14_96523836_+ncRNA_intronic
CAediting_1015292chr14_96523849_+ncRNA_intronic
CAediting_1015293chr14_96523864_+ncRNA_intronic
CAediting_1015294chr14_96524543_+ncRNA_intronic
CAediting_1015295chr14_96525604_+ncRNA_intronic
CAediting_1015296chr14_96525609_+ncRNA_intronic
CAediting_1015297chr14_96525624_+ncRNA_intronic
CAediting_1015298chr14_96525630_+ncRNA_intronic
CAediting_1015299chr14_96525631_+ncRNA_intronic
CAediting_1015300chr14_96525647_+ncRNA_intronic
CAediting_1015301chr14_96526450_+ncRNA_exonic
CAediting_1015302chr14_96528650_+ncRNA_intronic
CAediting_1015303chr14_96529651_+ncRNA_intronic
CAediting_1015304chr14_96529663_+ncRNA_intronic
CAediting_1015305chr14_96529671_+ncRNA_intronic
CAediting_1015306chr14_96529672_+ncRNA_intronic
CAediting_1015307chr14_96529710_+ncRNA_intronic
CAediting_1015308chr14_96530255_+ncRNA_intronic
CAediting_1015309chr14_96530422_+ncRNA_intronic
CAediting_1015310chr14_96530436_+ncRNA_intronic
CAediting_1015311chr14_96530504_+ncRNA_intronic
CAediting_1015312chr14_96530529_+ncRNA_intronic
CAediting_1015313chr14_96530854_+ncRNA_intronic
CAediting_1015314chr14_96530908_+ncRNA_intronic
CAediting_1015315chr14_96530914_+ncRNA_intronic
CAediting_1015316chr14_96530971_+ncRNA_intronic
CAediting_1015317chr14_96531082_+ncRNA_intronic
CAediting_1015318chr14_96531119_+ncRNA_intronic
CAediting_1015319chr14_96531131_+ncRNA_intronic
CAediting_1015320chr14_96531143_+ncRNA_intronic
CAediting_1015321chr14_96531208_+ncRNA_intronic
CAediting_1015322chr14_96531263_+ncRNA_intronic
CAediting_1015323chr14_96531313_+ncRNA_intronic
CAediting_1015324chr14_96533586_+UTR3
CAediting_1015325chr14_96533594_+UTR3
CAediting_1015326chr14_96533598_+UTR3
CAediting_1015327chr14_96533654_+UTR3
CAediting_1015328chr14_96533684_+UTR3
CAediting_1015329chr14_96533696_+UTR3
CAediting_1015330chr14_96533697_+UTR3
CAediting_1015331chr14_96533760_+UTR3
CAediting_1015332chr14_96533764_+UTR3
CAediting_1015333chr14_96533791_+UTR3
CAediting_1015334chr14_96533815_+UTR3
CAediting_1015335chr14_96549897_+ncRNA_intronic
CAediting_1015336chr14_96549898_+ncRNA_intronic
CAediting_1015337chr14_96549951_+ncRNA_intronic
CAediting_1015338chr14_96549971_+ncRNA_intronic
CAediting_1015339chr14_96550094_+ncRNA_intronic
CAediting_1015340chr14_96550104_+ncRNA_intronic
CAediting_1015341chr14_96553097_+ncRNA_exonic
CAediting_1015342chr14_96553120_+ncRNA_exonic
CAediting_1015343chr14_96553145_+ncRNA_exonic
CAediting_1015344chr14_96553146_+ncRNA_exonic
CAediting_1015345chr14_96553172_+ncRNA_exonic
CAediting_1015346chr14_96553175_+ncRNA_exonic
CAediting_1015347chr14_96553180_+ncRNA_exonic
CAediting_1015348chr14_96553241_+ncRNA_exonic
CAediting_1015349chr14_96553251_+ncRNA_exonic
CAediting_1015350chr14_96553257_+ncRNA_exonic
CAediting_1015351chr14_96553258_+ncRNA_exonic
CAediting_1015352chr14_96553263_+ncRNA_exonic
CAediting_1015353chr14_96553274_+ncRNA_exonic
CAediting_1015354chr14_96553280_+ncRNA_exonic
CAediting_1015355chr14_96553293_+ncRNA_exonic
CAediting_1015356chr14_96553303_+ncRNA_exonic
CAediting_1015357chr14_96553312_+ncRNA_exonic
CAediting_1015358chr14_96553314_+ncRNA_exonic
CAediting_1015359chr14_96553327_+ncRNA_exonic
CAediting_1015360chr14_96553335_+ncRNA_exonic
CAediting_1015361chr14_96553360_+ncRNA_exonic
CAediting_1015362chr14_96553390_+ncRNA_exonic
CAediting_1015363chr14_96553400_+ncRNA_exonic
CAediting_1015364chr14_96553404_+ncRNA_exonic
CAediting_1015365chr14_96553413_+ncRNA_exonic
CAediting_1015366chr14_96553420_+ncRNA_exonic
CAediting_1015367chr14_96553439_+ncRNA_exonic
CAediting_1015368chr14_96553456_+ncRNA_exonic
CAediting_1015369chr14_96553468_+ncRNA_exonic
CAediting_1015370chr14_96553476_+ncRNA_exonic
CAediting_1015371chr14_96553556_+ncRNA_intronic
CAediting_1015372chr14_96553563_+ncRNA_intronic
CAediting_1015373chr14_96553566_+ncRNA_intronic
CAediting_1015374chr14_96553606_+ncRNA_intronic
CAediting_1015375chr14_96553613_+ncRNA_intronic
CAediting_1015376chr14_96553630_+ncRNA_intronic
CAediting_1015377chr14_96553642_+ncRNA_intronic
CAediting_1015378chr14_96553712_+ncRNA_intronic
CAediting_1015379chr14_96553746_+ncRNA_intronic
CAediting_1015380chr14_96557011_+intronic
CAediting_1015381chr14_96559714_+intronic
CAediting_1015382chr14_96559718_+intronic
CAediting_1015383chr14_96559731_+intronic
CAediting_1015384chr14_96561914_+ncRNA_intronic
CAediting_1015385chr14_96564218_+ncRNA_intronic
CAediting_1015386chr14_96564226_+ncRNA_intronic
CAediting_1015387chr14_96564287_+ncRNA_intronic
CAediting_1015388chr14_96564289_+ncRNA_intronic
CAediting_1015389chr14_96564298_+ncRNA_intronic
CAediting_1015390chr14_96564306_+ncRNA_intronic
CAediting_1015391chr14_96564307_+ncRNA_intronic
CAediting_1015392chr14_96564310_+ncRNA_intronic
CAediting_1015393chr14_96564313_+ncRNA_intronic
CAediting_1015394chr14_96564328_+ncRNA_intronic
CAediting_1015395chr14_96567072_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1015268chr14_96505930_+SINEAluAluSc
CAediting_1015269chr14_96505983_+SINEAluAluSc
CAediting_1015270chr14_96506084_+SINEAluAluSc
CAediting_1015271chr14_96506101_+SINEAluAluSc
CAediting_1015272chr14_96518671_+SINEAluAluYc3
CAediting_1015273chr14_96518801_+SINEAluAluSz
CAediting_1015274chr14_96518825_+SINEAluAluSz
CAediting_1015275chr14_96518910_+SINEAluAluSz
CAediting_1015276chr14_96518946_+SINEAluAluSz
CAediting_1015277chr14_96519134_+SINEAluAluJb
CAediting_1015278chr14_96519180_+SINEAluAluJb
CAediting_1015279chr14_96521584_+SINEAluAluJr4
CAediting_1015280chr14_96521624_+SINEAluAluJr4
CAediting_1015281chr14_96521707_+SINEAluAluJr4
CAediting_1015282chr14_96521747_+SINEAluAluJr4
CAediting_1015283chr14_96522679_+SINEAluAluJb
CAediting_1015284chr14_96523690_+SINEAluAluSg
CAediting_1015285chr14_96523696_+SINEAluAluSg
CAediting_1015286chr14_96523734_+SINEAluAluSg
CAediting_1015287chr14_96523778_+SINEAluAluSg
CAediting_1015288chr14_96523796_+SINEAluAluSg
CAediting_1015289chr14_96523809_+SINEAluAluSg
CAediting_1015290chr14_96523823_+SINEAluAluSg
CAediting_1015291chr14_96523836_+SINEAluAluSg
CAediting_1015292chr14_96523849_+SINEAluAluSg
CAediting_1015293chr14_96523864_+SINEAluAluSg
CAediting_1015294chr14_96524543_+SINEAluAluJb
CAediting_1015295chr14_96525604_+SINEAluAluJb
CAediting_1015296chr14_96525609_+SINEAluAluJb
CAediting_1015297chr14_96525624_+SINEAluAluJb
CAediting_1015298chr14_96525630_+SINEAluAluJb
CAediting_1015299chr14_96525631_+SINEAluAluJb
CAediting_1015300chr14_96525647_+SINEAluAluJb
CAediting_1015301chr14_96526450_+SINEAluAluSz6
CAediting_1015302chr14_96528650_+SINEAluFLAM_A
CAediting_1015303chr14_96529651_+SINEAluAluSc8
CAediting_1015304chr14_96529663_+SINEAluAluSc8
CAediting_1015305chr14_96529671_+SINEAluAluSc8
CAediting_1015306chr14_96529672_+SINEAluAluSc8
CAediting_1015307chr14_96529710_+SINEAluAluSc8
CAediting_1015309chr14_96530422_+SINEAluAluJr
CAediting_1015310chr14_96530436_+SINEAluAluJr
CAediting_1015311chr14_96530504_+SINEAluAluJr
CAediting_1015312chr14_96530529_+SINEAluAluJr
CAediting_1015313chr14_96530854_+SINEAluAluJb
CAediting_1015314chr14_96530908_+SINEAluAluJb
CAediting_1015315chr14_96530914_+SINEAluAluJb
CAediting_1015316chr14_96530971_+SINEAluAluJb
CAediting_1015317chr14_96531082_+SINEAluAluY
CAediting_1015318chr14_96531119_+SINEAluAluY
CAediting_1015319chr14_96531131_+SINEAluAluY
CAediting_1015320chr14_96531143_+SINEAluAluY
CAediting_1015321chr14_96531208_+SINEAluAluY
CAediting_1015322chr14_96531263_+SINEAluAluY
CAediting_1015323chr14_96531313_+SINEAluAluJb
CAediting_1015324chr14_96533586_+SINEAluAluY
CAediting_1015325chr14_96533594_+SINEAluAluY
CAediting_1015326chr14_96533598_+SINEAluAluY
CAediting_1015327chr14_96533654_+SINEAluAluY
CAediting_1015328chr14_96533684_+SINEAluAluY
CAediting_1015329chr14_96533696_+SINEAluAluY
CAediting_1015330chr14_96533697_+SINEAluAluY
CAediting_1015331chr14_96533760_+SINEAluAluY
CAediting_1015332chr14_96533764_+SINEAluAluY
CAediting_1015333chr14_96533791_+SINEAluAluY
CAediting_1015334chr14_96533815_+SINEAluAluY
CAediting_1015335chr14_96549897_+SINEAluAluJr
CAediting_1015336chr14_96549898_+SINEAluAluJr
CAediting_1015337chr14_96549951_+SINEAluAluJr
CAediting_1015338chr14_96549971_+SINEAluAluJr
CAediting_1015339chr14_96550094_+SINEAluAluJr
CAediting_1015340chr14_96550104_+SINEAluAluJr
CAediting_1015341chr14_96553097_+SINEAluFLAM_A
CAediting_1015342chr14_96553120_+SINEAluFLAM_A
CAediting_1015343chr14_96553145_+SINEAluFLAM_A
CAediting_1015344chr14_96553146_+SINEAluFLAM_A
CAediting_1015345chr14_96553172_+SINEAluFLAM_A
CAediting_1015346chr14_96553175_+SINEAluFLAM_A
CAediting_1015347chr14_96553180_+SINEAluFLAM_A
CAediting_1015348chr14_96553241_+SINEAluAluJb
CAediting_1015349chr14_96553251_+SINEAluAluJb
CAediting_1015350chr14_96553257_+SINEAluAluJb
CAediting_1015351chr14_96553258_+SINEAluAluJb
CAediting_1015352chr14_96553263_+SINEAluAluJb
CAediting_1015353chr14_96553274_+SINEAluAluJb
CAediting_1015354chr14_96553280_+SINEAluAluJb
CAediting_1015355chr14_96553293_+SINEAluAluJb
CAediting_1015356chr14_96553303_+SINEAluAluJb
CAediting_1015357chr14_96553312_+SINEAluAluJb
CAediting_1015358chr14_96553314_+SINEAluAluJb
CAediting_1015359chr14_96553327_+SINEAluAluJb
CAediting_1015360chr14_96553335_+SINEAluAluJb
CAediting_1015361chr14_96553360_+SINEAluAluJb
CAediting_1015362chr14_96553390_+SINEAluAluJb
CAediting_1015363chr14_96553400_+SINEAluAluJb
CAediting_1015364chr14_96553404_+SINEAluAluJb
CAediting_1015365chr14_96553413_+SINEAluAluJb
CAediting_1015366chr14_96553420_+SINEAluAluJb
CAediting_1015367chr14_96553439_+SINEAluAluJb
CAediting_1015368chr14_96553456_+SINEAluAluJb
CAediting_1015369chr14_96553468_+SINEAluAluJb
CAediting_1015370chr14_96553476_+SINEAluAluJb
CAediting_1015371chr14_96553556_+SINEAluAluSx1
CAediting_1015372chr14_96553563_+SINEAluAluSx1
CAediting_1015373chr14_96553566_+SINEAluAluSx1
CAediting_1015374chr14_96553606_+SINEAluAluSx1
CAediting_1015375chr14_96553613_+SINEAluAluSx1
CAediting_1015376chr14_96553630_+SINEAluAluSx1
CAediting_1015377chr14_96553642_+SINEAluAluSx1
CAediting_1015378chr14_96553712_+SINEAluAluSx1
CAediting_1015379chr14_96553746_+SINEAluAluSx1
CAediting_1015380chr14_96557011_+SINEAluAluJr4
CAediting_1015381chr14_96559714_+LINEL1L1MC5
CAediting_1015382chr14_96559718_+LINEL1L1MC5
CAediting_1015383chr14_96559731_+LINEL1L1MC5
CAediting_1015384chr14_96561914_+SINEAluAluSx1
CAediting_1015385chr14_96564218_+LINEL1L1MC5
CAediting_1015386chr14_96564226_+LINEL1L1MC5
CAediting_1015387chr14_96564287_+LINEL1L1MC5
CAediting_1015388chr14_96564289_+LINEL1L1MC5
CAediting_1015389chr14_96564298_+LINEL1L1MC5
CAediting_1015390chr14_96564306_+LINEL1L1MC5
CAediting_1015391chr14_96564307_+LINEL1L1MC5
CAediting_1015392chr14_96564310_+LINEL1L1MC5
CAediting_1015393chr14_96564313_+LINEL1L1MC5
CAediting_1015394chr14_96564328_+LINEL1L1MC5

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RNA A-to-I editing events in the alternative splicing sites for PAPOLA

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000090060.16.PAPOLA.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000090060.16.PAPOLA.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PAPOLA

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PAPOLA

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PAPOLA

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1015326chr14_96533598_+ENSG00000090060.16ENST00000557320hsa-miR-3940-3p96533595965336017mer-m89653358196533602151.00-22.47
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-29a-3p96533813965338197mer-m89653379996533820155.00-21.50
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-29b-3p96533813965338197mer-m89653379796533820150.00-18.73
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-29b-3p96533813965338197mer-m89653379796533820150.00-18.73
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-29c-3p96533813965338197mer-m89653379996533820155.00-21.50
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-7153-3p96533810965338167mer-m89653380096533817148.00-19.07
CAediting_1015334chr14_96533815_+ENSG00000090060.16ENST00000557320hsa-miR-767-5p96533812965338187mer-m89653379796533819167.00-25.98
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-1273c96533589965335946mer9653357496533595140.00-27.89
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-1285-3p96533593965335986mer9653357896533599160.00-31.86
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-1285-3p96533593965335986mer9653357896533599160.00-31.86
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-448696533592965335987mer-m89653358196533599146.00-18.47
CAediting_1015330chr14_96533697_+ENSG00000090060.16ENST00000557320hsa-miR-20b-3p96533690965336967mer-m89653367596533697153.00-18.04
CAediting_1015330chr14_96533697_+ENSG00000090060.16ENST00000557320hsa-miR-6720-3p96533694965337007mer-m89653368096533701152.00-20.67
CAediting_1015331chr14_96533760_+ENSG00000090060.16ENST00000557320hsa-miR-3190-5p96533758965337647mer-m89653374796533765148.00-20.60
CAediting_1015331chr14_96533760_+ENSG00000090060.16ENST00000557320hsa-miR-548s96533757965337637mer-m89653374296533764149.00-16.39
CAediting_1015333chr14_96533791_+ENSG00000090060.16ENST00000557320hsa-miR-2681-3p96533787965337926mer9653377296533793144.00-12.81
CAediting_1015328chr14_96533684_+ENSG00000090060.16ENST00000557320hsa-miR-4691-3p96533681965336877mer-m89653366796533688150.00-25.69

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-126296533591965335977mer-m89653357696533598144-16.47
CAediting_1015326chr14_96533598_+ENSG00000090060.16ENST00000557320hsa-miR-126296533591965335977mer-m89653357696533598144-16.47
CAediting_1015331chr14_96533760_+ENSG00000090060.16ENST00000557320hsa-miR-3064-5p96533759965337646mer9653374596533765140-20.99
CAediting_1015332chr14_96533764_+ENSG00000090060.16ENST00000557320hsa-miR-3064-5p96533759965337646mer9653374596533765140-20.99
CAediting_1015324chr14_96533586_+ENSG00000090060.16ENST00000557320hsa-miR-5586-3p96533583965335897mer-m89653356996533590152-18.9
CAediting_1015328chr14_96533684_+ENSG00000090060.16ENST00000557320hsa-miR-569096533681965336877mer-m89653366896533688145-17.85
CAediting_1015326chr14_96533598_+ENSG00000090060.16ENST00000557320hsa-miR-66196533594965336007mer-m89653357896533601147-18.48
CAediting_1015331chr14_96533760_+ENSG00000090060.16ENST00000557320hsa-miR-664a-5p96533758965337647mer-m89653374396533765148-14.11
CAediting_1015332chr14_96533764_+ENSG00000090060.16ENST00000557320hsa-miR-664a-5p96533758965337647mer-m89653374396533765148-14.11
CAediting_1015325chr14_96533594_+ENSG00000090060.16ENST00000557320hsa-miR-6736-5p96533591965335977mer-m89653357896533598143-20.94
CAediting_1015326chr14_96533598_+ENSG00000090060.16ENST00000557320hsa-miR-6736-5p96533591965335977mer-m89653357896533598143-20.94
CAediting_1015326chr14_96533598_+ENSG00000090060.16ENST00000557320hsa-miR-6742-3p96533593965335997mer-m89653358196533600140-13.49
CAediting_1015324chr14_96533586_+ENSG00000090060.16ENST00000557320hsa-miR-75996533584965335907mer-m89653357196533591143-15.16

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688080chr9_63819626_+ENSG00000090060.16ENST00000553689hsa-miR-4477b96556193965562008mer-1a9655617996556200148-13.26
CAediting_980496chr14_31014685_-ENSG00000090060.16ENST00000557320hsa-miR-624-3p96534750965347578mer-1a9653473896534757152-14.94
CAediting_393chr1_1167164_+ENSG00000090060.16ENST00000557320hsa-miR-200b-3p96533054965330607mer-m89653304196533061145-11.35
CAediting_393chr1_1167164_+ENSG00000090060.16ENST00000557471hsa-miR-200b-3p96531915965319217mer-m89653190296531922142-12.03
CAediting_980496chr14_31014685_-ENSG00000090060.16ENST00000553461hsa-miR-624-3p96534750965347578mer-1a9653473896534757152-14.94
CAediting_1160181chr17_7017644_-ENSG00000090060.16ENST00000216277hsa-miR-195-3p96565644965656507mer-1a9656563096565650146-14.33
CAediting_1351755chr19_40282625_-ENSG00000090060.16ENST00000216277hsa-miR-64196566988965669947mer-1a9656697296566994142-13.83
CAediting_396018chr5_1062918_-ENSG00000090060.16ENST00000216277hsa-miR-463596565304965653107mer-m89656529196565311145-12.42
CAediting_442554chr5_154685830_+ENSG00000090060.16ENST00000216277hsa-miR-130396566166965661727mer-m89656615296566173157-17.97
CAediting_1160181chr17_7017644_-ENSG00000090060.16ENST00000553689hsa-miR-195-3p96532368965323758mer-1a9653235696532375151-12.54
CAediting_228905chr2_188297554_+ENSG00000090060.16ENST00000553689hsa-miR-561-3p96544199965442057mer-m89654418496544206143-10.96
CAediting_1229413chr17_67471544_+ENSG00000090060.16ENST00000557320hsa-miR-548aa96534268965342758mer-1a9653424996534275158-14.64
CAediting_1229413chr17_67471544_+ENSG00000090060.16ENST00000557320hsa-miR-548aa96532728965327358mer-1a9653271196532735140-8.22
CAediting_228905chr2_188297554_+ENSG00000090060.16ENST00000557320hsa-miR-561-3p96532892965328987mer-m89653287896532899145-12.4
CAediting_1229413chr17_67471544_+ENSG00000090060.16ENST00000557471hsa-miR-548aa96532091965320977mer-m89653207596532098153-14.17
CAediting_396018chr5_1062918_-ENSG00000090060.16ENST00000392990hsa-miR-463596565304965653107mer-m89656529196565311145-12.42
CAediting_396018chr5_1062918_-ENSG00000090060.16ENST00000556459hsa-miR-463596565304965653107mer-m89656529196565311145-12.42

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000090060.16ENST00000216277hsa-miR-130396566079965660868mer-1a9656606296566086146-19.54
CAediting_393chr1_1167164_+ENSG00000090060.16ENST00000216277hsa-miR-200b-3p96565933965659397mer-m89656591996565940142-7.2
CAediting_1229413chr17_67471544_+ENSG00000090060.16ENST00000216277hsa-miR-548aa96565708965657158mer-1a9656569196565715155-7.1
CAediting_1229414chr17_67471546_+ENSG00000090060.16ENST00000216277hsa-miR-548aa96565708965657158mer-1a9656569196565715155-7.1
CAediting_1229415chr17_67471547_+ENSG00000090060.16ENST00000216277hsa-miR-548aa96565708965657158mer-1a9656569196565715155-7.1
CAediting_1229413chr17_67471544_+ENSG00000090060.16ENST00000557320hsa-miR-548aa96533289965332957mer-m89653326896533296153-16.15
CAediting_117844chr1_162342605_+ENSG00000090060.16ENST00000557320hsa-miR-556-3p96534444965344507mer-m89653442896534451155-12.06
CAediting_393chr1_1167164_+ENSG00000090060.16ENST00000557471hsa-miR-200b-3p96531763965317697mer-m89653174796531770150-8.69

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PAPOLA

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for PAPOLA

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_1015372chr14_96553563_+0.01555739226872190.168777972718092....
STADCAediting_1015377chr14_96553642_+0.03282609610941230.135580662149999....

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Relation with cancer stages for PAPOLA

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_1015372chr14_96553563_+0.02752845380636750.237717751454134
ESCApathologic_stageCAediting_1015377chr14_96553642_+0.01265363677527040.243741739338303
OVclinical_stageCAediting_1015373chr14_96553566_+0.0334161537741267-0.279781316428704

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Relation with survival for PAPOLA

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
ESCACAediting_1015373chr14_96553566_+0.005587460868138110.038572919.4624

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RelatedDrugs for PAPOLA

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PAPOLA

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource