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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ADCY3 (CAeditome ID:109)

Gene summary for ADCY3

check button Gene summary
Gene informationGene symbol

ADCY3

Gene ID

109

Gene nameadenylate cyclase 3
SynonymsAC-III|AC3|BMIQ19
Cytomap

2p23.3

Type of geneprotein-coding
Descriptionadenylate cyclase type 3ATP pyrophosphate-lyase 3adenylate cyclase type IIIadenylate cyclase, olfactive typeadenylyl cyclase 3adenylyl cyclase, type III
Modification date20210518
UniProtAcc

O60266

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ADCY3

GO:0005737

Adenylate cyclase type 3

11549699

ADCY3

GO:0005886

Adenylate cyclase type 3

11549699


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RNA A-to-I events for ADCY3

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000138031.13

check button RNA A-to-I editing events in Cancer.
CAediting_160259(24822552, -), CAediting_160260(24823892, -), CAediting_160261(24824767, -), CAediting_160262(24824777, -), CAediting_160263(24825397, -), CAediting_160264(24825407, -), CAediting_160265(24825408, -), CAediting_160266(24825458, -), CAediting_160267(24825463, -), CAediting_160268(24825472, -), CAediting_160269(24825479, -), CAediting_160270(24825491, -), CAediting_160271(24825495, -), CAediting_160272(24825499, -), CAediting_160273(24825503, -), CAediting_160274(24825504, -), CAediting_160275(24825505, -), CAediting_160276(24825508, -), CAediting_160277(24825510, -), CAediting_160278(24825512, -), CAediting_160279(24825592, -), CAediting_160280(24829025, -), CAediting_160281(24829128, -), CAediting_160282(24829273, -), CAediting_160283(24829289, -), CAediting_160284(24829488, -), CAediting_160285(24830108, -), CAediting_160286(24830268, -), CAediting_160287(24853585, -), CAediting_160288(24853598, -), CAediting_160289(24853608, -), CAediting_160290(24854832, -), CAediting_160291(24863613, -), CAediting_160292(24863646, -), CAediting_160293(24863653, -), CAediting_160294(24863659, -), CAediting_160295(24863660, -), CAediting_160296(24888829, -), CAediting_160297(24892915, -), CAediting_160298(24893091, -), CAediting_160299(24893117, -), CAediting_160300(24893126, -), CAediting_160301(24893142, -), CAediting_160302(24893144, -), CAediting_160303(24893149, -), CAediting_160304(24893172, -), CAediting_160305(24893259, -), CAediting_160306(24893262, -), CAediting_160307(24893271, -), CAediting_160308(24893288, -), CAediting_160309(24893503, -), CAediting_160310(24893686, -), CAediting_160311(24893746, -), CAediting_160312(24893802, -), CAediting_160313(24893809, -), CAediting_160314(24893834, -), CAediting_160315(24894314, -), CAediting_160316(24894428, -), CAediting_160317(24894469, -), CAediting_160318(24894475, -), CAediting_160319(24895121, -), CAediting_160320(24895122, -), CAediting_160321(24895202, -), CAediting_160322(24895205, -), CAediting_160323(24895206, -), CAediting_160324(24895212, -), CAediting_160325(24895215, -), CAediting_160326(24895219, -), CAediting_160327(24895229, -), CAediting_160328(24895316, -), CAediting_160329(24895359, -), CAediting_160330(24895656, -), CAediting_160331(24895695, -), CAediting_160332(24895723, -), CAediting_160333(24895728, -), CAediting_160334(24895747, -), CAediting_160335(24895750, -), CAediting_160336(24895754, -), CAediting_160337(24895790, -), CAediting_160338(24895794, -), CAediting_160339(24895799, -), CAediting_160340(24895801, -), CAediting_160341(24895803, -), CAediting_160342(24896141, -), CAediting_160343(24896273, -), CAediting_160344(24902330, -), CAediting_160345(24910744, -), CAediting_160346(24910758, -), CAediting_160347(24910779, -), CAediting_160348(24910785, -), CAediting_160349(24910818, -), CAediting_160350(24910821, -), CAediting_160351(24910835, -), CAediting_160352(24910863, -), CAediting_160353(24910874, -), CAediting_160354(24910917, -), CAediting_160355(24911313, -), CAediting_160356(24911318, -), CAediting_160357(24911748, -), CAediting_160358(24911835, -),

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RNA editing positional annotations for ADCY3 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_160259chr2_24822552_-nonsynonymous SNVENST00000260600.8c.A2962Gp.T988ADPD
CAediting_160259chr2_24822552_-nonsynonymous SNVENST00000405392.4c.A2965Gp.T989ADPD
CAediting_160259chr2_24822552_-nonsynonymous SNVENST00000606682.4c.A1903Gp.T635ADPD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_160259chr2_24822552_-exonic
CAediting_160260chr2_24823892_-intronic
CAediting_160261chr2_24824767_-intronic
CAediting_160262chr2_24824777_-intronic
CAediting_160263chr2_24825397_-intronic
CAediting_160264chr2_24825407_-intronic
CAediting_160265chr2_24825408_-intronic
CAediting_160266chr2_24825458_-intronic
CAediting_160267chr2_24825463_-intronic
CAediting_160268chr2_24825472_-intronic
CAediting_160269chr2_24825479_-intronic
CAediting_160270chr2_24825491_-intronic
CAediting_160271chr2_24825495_-intronic
CAediting_160272chr2_24825499_-intronic
CAediting_160273chr2_24825503_-intronic
CAediting_160274chr2_24825504_-intronic
CAediting_160275chr2_24825505_-intronic
CAediting_160276chr2_24825508_-intronic
CAediting_160277chr2_24825510_-intronic
CAediting_160278chr2_24825512_-intronic
CAediting_160279chr2_24825592_-intronic
CAediting_160280chr2_24829025_-ncRNA_intronic
CAediting_160281chr2_24829128_-ncRNA_intronic
CAediting_160282chr2_24829273_-ncRNA_intronic
CAediting_160283chr2_24829289_-ncRNA_intronic
CAediting_160284chr2_24829488_-ncRNA_intronic
CAediting_160285chr2_24830108_-ncRNA_intronic
CAediting_160286chr2_24830268_-ncRNA_intronic
CAediting_160287chr2_24853585_-intronic
CAediting_160288chr2_24853598_-intronic
CAediting_160289chr2_24853608_-intronic
CAediting_160290chr2_24854832_-intronic
CAediting_160291chr2_24863613_-intronic
CAediting_160292chr2_24863646_-intronic
CAediting_160293chr2_24863653_-intronic
CAediting_160294chr2_24863659_-intronic
CAediting_160295chr2_24863660_-intronic
CAediting_160296chr2_24888829_-intronic
CAediting_160297chr2_24892915_-intronic
CAediting_160298chr2_24893091_-intronic
CAediting_160299chr2_24893117_-intronic
CAediting_160300chr2_24893126_-intronic
CAediting_160301chr2_24893142_-intronic
CAediting_160302chr2_24893144_-intronic
CAediting_160303chr2_24893149_-intronic
CAediting_160304chr2_24893172_-intronic
CAediting_160305chr2_24893259_-intronic
CAediting_160306chr2_24893262_-intronic
CAediting_160307chr2_24893271_-intronic
CAediting_160308chr2_24893288_-intronic
CAediting_160309chr2_24893503_-intronic
CAediting_160310chr2_24893686_-intronic
CAediting_160311chr2_24893746_-intronic
CAediting_160312chr2_24893802_-intronic
CAediting_160313chr2_24893809_-intronic
CAediting_160314chr2_24893834_-intronic
CAediting_160315chr2_24894314_-intronic
CAediting_160316chr2_24894428_-intronic
CAediting_160317chr2_24894469_-intronic
CAediting_160318chr2_24894475_-intronic
CAediting_160319chr2_24895121_-intronic
CAediting_160320chr2_24895122_-intronic
CAediting_160321chr2_24895202_-intronic
CAediting_160322chr2_24895205_-intronic
CAediting_160323chr2_24895206_-intronic
CAediting_160324chr2_24895212_-intronic
CAediting_160325chr2_24895215_-intronic
CAediting_160326chr2_24895219_-intronic
CAediting_160327chr2_24895229_-intronic
CAediting_160328chr2_24895316_-intronic
CAediting_160329chr2_24895359_-intronic
CAediting_160330chr2_24895656_-intronic
CAediting_160331chr2_24895695_-intronic
CAediting_160332chr2_24895723_-intronic
CAediting_160333chr2_24895728_-intronic
CAediting_160334chr2_24895747_-intronic
CAediting_160335chr2_24895750_-intronic
CAediting_160336chr2_24895754_-intronic
CAediting_160337chr2_24895790_-intronic
CAediting_160338chr2_24895794_-intronic
CAediting_160339chr2_24895799_-intronic
CAediting_160340chr2_24895801_-intronic
CAediting_160341chr2_24895803_-intronic
CAediting_160342chr2_24896141_-intronic
CAediting_160343chr2_24896273_-intronic
CAediting_160344chr2_24902330_-intronic
CAediting_160345chr2_24910744_-intronic
CAediting_160346chr2_24910758_-intronic
CAediting_160347chr2_24910779_-intronic
CAediting_160348chr2_24910785_-intronic
CAediting_160349chr2_24910818_-intronic
CAediting_160350chr2_24910821_-intronic
CAediting_160351chr2_24910835_-intronic
CAediting_160352chr2_24910863_-intronic
CAediting_160353chr2_24910874_-intronic
CAediting_160354chr2_24910917_-intronic
CAediting_160355chr2_24911313_-intronic
CAediting_160356chr2_24911318_-intronic
CAediting_160357chr2_24911748_-intronic
CAediting_160358chr2_24911835_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_160260chr2_24823892_-SINEAluAluSx
CAediting_160261chr2_24824767_-SINEAluAluSx1
CAediting_160262chr2_24824777_-SINEAluAluSx1
CAediting_160263chr2_24825397_-SINEAluAluJb
CAediting_160264chr2_24825407_-SINEAluAluJb
CAediting_160265chr2_24825408_-SINEAluAluJb
CAediting_160266chr2_24825458_-SINEAluAluJb
CAediting_160267chr2_24825463_-SINEAluAluJb
CAediting_160268chr2_24825472_-SINEAluAluJb
CAediting_160269chr2_24825479_-SINEAluAluJb
CAediting_160270chr2_24825491_-SINEAluAluJb
CAediting_160271chr2_24825495_-SINEAluAluJb
CAediting_160272chr2_24825499_-SINEAluAluJb
CAediting_160273chr2_24825503_-SINEAluAluJb
CAediting_160274chr2_24825504_-SINEAluAluJb
CAediting_160275chr2_24825505_-SINEAluAluJb
CAediting_160276chr2_24825508_-SINEAluAluJb
CAediting_160277chr2_24825510_-SINEAluAluJb
CAediting_160278chr2_24825512_-SINEAluAluJb
CAediting_160279chr2_24825592_-SINEAluAluJb
CAediting_160280chr2_24829025_-SINEAluAluSz
CAediting_160281chr2_24829128_-SINEAluAluSz
CAediting_160282chr2_24829273_-SINEAluAluSz
CAediting_160283chr2_24829289_-SINEAluAluSz
CAediting_160284chr2_24829488_-SINEAluAluY
CAediting_160285chr2_24830108_-SINEAluAluSg
CAediting_160286chr2_24830268_-SINEAluAluSg
CAediting_160287chr2_24853585_-SINEAluAluSx
CAediting_160288chr2_24853598_-SINEAluAluSx
CAediting_160289chr2_24853608_-SINEAluAluSx
CAediting_160290chr2_24854832_-SINEAluAluSx1
CAediting_160291chr2_24863613_-SINEAluFLAM_C
CAediting_160292chr2_24863646_-SINEAluFLAM_C
CAediting_160293chr2_24863653_-SINEAluFLAM_C
CAediting_160294chr2_24863659_-SINEAluFLAM_C
CAediting_160295chr2_24863660_-SINEAluFLAM_C
CAediting_160296chr2_24888829_-SINEAluAluSx
CAediting_160297chr2_24892915_-SINEAluAluSz6
CAediting_160298chr2_24893091_-SINEAluAluJr4
CAediting_160299chr2_24893117_-SINEAluAluJr4
CAediting_160300chr2_24893126_-SINEAluAluJr4
CAediting_160301chr2_24893142_-SINEAluAluJr4
CAediting_160302chr2_24893144_-SINEAluAluJr4
CAediting_160303chr2_24893149_-SINEAluAluJr4
CAediting_160304chr2_24893172_-SINEAluAluJr4
CAediting_160305chr2_24893259_-SINEAluAluSx3
CAediting_160306chr2_24893262_-SINEAluAluSx3
CAediting_160307chr2_24893271_-SINEAluAluSx3
CAediting_160308chr2_24893288_-SINEAluAluSx3
CAediting_160309chr2_24893503_-SINEAluAluJr
CAediting_160310chr2_24893686_-SINEAluAluJb
CAediting_160311chr2_24893746_-SINEAluAluJb
CAediting_160312chr2_24893802_-SINEAluAluJb
CAediting_160313chr2_24893809_-SINEAluAluJb
CAediting_160314chr2_24893834_-SINEAluAluJb
CAediting_160315chr2_24894314_-SINEAluAluJr
CAediting_160316chr2_24894428_-SINEAluAluJr
CAediting_160317chr2_24894469_-SINEAluAluJr
CAediting_160318chr2_24894475_-SINEAluAluJr
CAediting_160319chr2_24895121_-SINEAluAluSc
CAediting_160320chr2_24895122_-SINEAluAluSc
CAediting_160321chr2_24895202_-SINEAluAluSc
CAediting_160322chr2_24895205_-SINEAluAluSc
CAediting_160323chr2_24895206_-SINEAluAluSc
CAediting_160324chr2_24895212_-SINEAluAluSc
CAediting_160325chr2_24895215_-SINEAluAluSc
CAediting_160326chr2_24895219_-SINEAluAluSc
CAediting_160327chr2_24895229_-SINEAluAluSc
CAediting_160328chr2_24895316_-SINEAluAluSc
CAediting_160329chr2_24895359_-SINEAluAluSc
CAediting_160330chr2_24895656_-SINEAluAluJb
CAediting_160331chr2_24895695_-SINEAluAluJb
CAediting_160332chr2_24895723_-SINEAluAluJb
CAediting_160333chr2_24895728_-SINEAluAluJb
CAediting_160334chr2_24895747_-SINEAluAluJb
CAediting_160335chr2_24895750_-SINEAluAluJb
CAediting_160336chr2_24895754_-SINEAluAluJb
CAediting_160337chr2_24895790_-SINEAluAluJb
CAediting_160338chr2_24895794_-SINEAluAluJb
CAediting_160339chr2_24895799_-SINEAluAluJb
CAediting_160340chr2_24895801_-SINEAluAluJb
CAediting_160341chr2_24895803_-SINEAluAluJb
CAediting_160342chr2_24896141_-SINEAluAluSg
CAediting_160343chr2_24896273_-SINEAluAluSg
CAediting_160344chr2_24902330_-SINEAluAluJo
CAediting_160345chr2_24910744_-SINEAluAluSc
CAediting_160346chr2_24910758_-SINEAluAluSc
CAediting_160347chr2_24910779_-SINEAluAluSc
CAediting_160348chr2_24910785_-SINEAluAluSc
CAediting_160349chr2_24910818_-SINEAluAluSc
CAediting_160350chr2_24910821_-SINEAluAluSc
CAediting_160351chr2_24910835_-SINEAluAluSc
CAediting_160352chr2_24910863_-SINEAluAluSc
CAediting_160353chr2_24910874_-SINEAluAluSc
CAediting_160354chr2_24910917_-SINEAluAluSc
CAediting_160355chr2_24911313_-SINEAluAluJr4
CAediting_160356chr2_24911318_-SINEAluAluJr4
CAediting_160357chr2_24911748_-SINEAluAluJr4
CAediting_160358chr2_24911835_-SINEAluAluJr4

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RNA A-to-I editing events in the alternative splicing sites for ADCY3

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000138031.13.ADCY3.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000138031.13.ADCY3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ADCY3

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ADCY3

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for ADCY3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000138031.13ENST00000260600hsa-miR-1285-5p24819475248194817mer-m82481947424819496158-19.22
CAediting_573001chr7_92204086_-ENSG00000138031.13ENST00000606682hsa-miR-1285-5p24819475248194817mer-m82481947424819496158-19.22
CAediting_1054808chr15_66496985_-ENSG00000138031.13ENST00000498288hsa-miR-451224820051248200588mer-1a2482005124820072152-21.85
CAediting_573001chr7_92204086_-ENSG00000138031.13ENST00000498288hsa-miR-1285-5p24819475248194817mer-m82481947424819496158-19.22
CAediting_468389chr6_31355314_-ENSG00000138031.13ENST00000260600hsa-miR-6891-5p24819809248198168mer-1a2481980924819827140-18.48
CAediting_468389chr6_31355314_-ENSG00000138031.13ENST00000606682hsa-miR-6891-5p24819809248198168mer-1a2481980924819827140-18.48
CAediting_468389chr6_31355314_-ENSG00000138031.13ENST00000498288hsa-miR-6891-5p24819809248198168mer-1a2481980924819827140-18.48

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ADCY3

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000260600.8protein_codingSoverviewSoverview
ENST00000405392.4protein_codingSoverviewSoverview
ENST00000485887.1retained_intronSoverviewSoverview
ENST00000606682.4protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_160259ENST00000260600.8chr2_24822552_--2044.60-2041.50-2044.60
CAediting_160259ENST00000405392.4chr2_24822552_--1719.50-1714.10-1719.50
CAediting_160259ENST00000485887.1chr2_24822552_--356.00-350.60-356.00
CAediting_160259ENST00000606682.4chr2_24822552_--1188.00-1182.60-1188.00

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Relation with ADAR for ADCY3

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for ADCY3

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for ADCY3

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for ADCY3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ADCY3

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
ADCY3C0005586Bipolar Disorder1PSYGENET
ADCY3C0011875Diabetic Angiopathies1CTD_human
ADCY3C0025945Microangiopathy, Diabetic1CTD_human
ADCY3C0028754Obesity1CTD_human
ADCY3C0028756Obesity, Morbid1CTD_human
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