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Editing gene: MRPS30 (CAeditome ID:10884)

Gene summary for MRPS30

Gene summary

Gene information	Gene symbol	MRPS30
	Gene ID	10884
	Gene name	mitochondrial ribosomal protein S30
	Synonyms	MRP-S30\|PAP\|PDCD9\|S30mt
	Cytomap	5p12
	Type of gene	protein-coding
	Description	39S ribosomal protein S30, mitochondrial28S ribosomal protein S30, mitochondrialmitochondrial large ribosomal subunit protein mL65mitochondrial large ribosomal subunit protein mS30programmed cell death 9
	Modification date	20210518
	UniProtAcc	Q9NP92
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
MRPS30	GO:0005739	39S ribosomal protein S30, mitochondrial	28892042
MRPS30	GO:0005762	39S ribosomal protein S30, mitochondrial	28892042

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RNA A-to-I events for MRPS30

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000112996.8

RNA A-to-I editing events in Cancer.

CAediting_406297(44815550, +), CAediting_406298(44815566, +), CAediting_406299(44815567, +), CAediting_406300(44815572, +), CAediting_406301(44815573, +), CAediting_406302(44815575, +), CAediting_406303(44815588, +), CAediting_406304(44815607, +), CAediting_406305(44815612, +), CAediting_406306(44815615, +), CAediting_406307(44815621, +), CAediting_406308(44815623, +), CAediting_406309(44815626, +), CAediting_406310(44815636, +), CAediting_406311(44815638, +), CAediting_406312(44815643, +), CAediting_406313(44815644, +), CAediting_406314(44815646, +), CAediting_406315(44815651, +), CAediting_406316(44815657, +), CAediting_406317(44815660, +), CAediting_406318(44815662, +), CAediting_406319(44815663, +), CAediting_406320(44815664, +), CAediting_406321(44815666, +), CAediting_406322(44815669, +), CAediting_406323(44815670, +), CAediting_406324(44815671, +), CAediting_406325(44815675, +), CAediting_406326(44815701, +), CAediting_406327(44815702, +), CAediting_406328(44815707, +), CAediting_406329(44815711, +), CAediting_406330(44815724, +), CAediting_406331(44815728, +), CAediting_406332(44815730, +), CAediting_406333(44815731, +), CAediting_406334(44815734, +), CAediting_406335(44815743, +), CAediting_406336(44815750, +), CAediting_406337(44815754, +), CAediting_406338(44815763, +), CAediting_406339(44815767, +), CAediting_406340(44815768, +), CAediting_406341(44815772, +), CAediting_406342(44815792, +), CAediting_406343(44815809, +), CAediting_406344(44815810, +), CAediting_406345(44815812, +), CAediting_406346(44816227, +), CAediting_406347(44816252, +), CAediting_406348(44816273, +), CAediting_406349(44816278, +), CAediting_406350(44816281, +), CAediting_406351(44816290, +), CAediting_406352(44816303, +), CAediting_406353(44816304, +), CAediting_406354(44816308, +), CAediting_406355(44816321, +), CAediting_406356(44816330, +), CAediting_406357(44816333, +), CAediting_406358(44816338, +), CAediting_406359(44816347, +), CAediting_406360(44816349, +), CAediting_406361(44816357, +), CAediting_406362(44816373, +), CAediting_406363(44816374, +), CAediting_406364(44816383, +), CAediting_406365(44816387, +), CAediting_406366(44816388, +), CAediting_406367(44816390, +), CAediting_406368(44816392, +), CAediting_406369(44816394, +), CAediting_406370(44816407, +), CAediting_406371(44816416, +), CAediting_406372(44816429, +), CAediting_406373(44816436, +), CAediting_406374(44816441, +), CAediting_406375(44816446, +), CAediting_406376(44816454, +), CAediting_406377(44816467, +), CAediting_406378(44816468, +), CAediting_406379(44816469, +), CAediting_406380(44816481, +), CAediting_406381(44816483, +), CAediting_406382(44816490, +), CAediting_406383(44819729, +), CAediting_406384(44819736, +), CAediting_406385(44819771, +), CAediting_406386(44819781, +), CAediting_406387(44819786, +), CAediting_406388(44819806, +), CAediting_406389(44819807, +), CAediting_406390(44819810, +), CAediting_406391(44819824, +), CAediting_406392(44819836, +), CAediting_406393(44819843, +), CAediting_406394(44819869, +), CAediting_406395(44819875, +), CAediting_406396(44819879, +), CAediting_406397(44819880, +), CAediting_406398(44819883, +), CAediting_406399(44819890, +), CAediting_406400(44819902, +), CAediting_406401(44819914, +), CAediting_406402(44819927, +), CAediting_406403(44819928, +), CAediting_406404(44819952, +), CAediting_406405(44819953, +), CAediting_406406(44819954, +), CAediting_406407(44819966, +),

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RNA editing positional annotations for MRPS30 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_406297	chr5_44815550_+	ncRNA_exonic
CAediting_406298	chr5_44815566_+	ncRNA_intronic
CAediting_406299	chr5_44815567_+	ncRNA_intronic
CAediting_406300	chr5_44815572_+	ncRNA_intronic
CAediting_406301	chr5_44815573_+	ncRNA_intronic
CAediting_406302	chr5_44815575_+	ncRNA_intronic
CAediting_406303	chr5_44815588_+	ncRNA_intronic
CAediting_406304	chr5_44815607_+	ncRNA_intronic
CAediting_406305	chr5_44815612_+	ncRNA_intronic
CAediting_406306	chr5_44815615_+	ncRNA_intronic
CAediting_406307	chr5_44815621_+	ncRNA_intronic
CAediting_406308	chr5_44815623_+	ncRNA_intronic
CAediting_406309	chr5_44815626_+	ncRNA_intronic
CAediting_406310	chr5_44815636_+	ncRNA_intronic
CAediting_406311	chr5_44815638_+	ncRNA_intronic
CAediting_406312	chr5_44815643_+	ncRNA_intronic
CAediting_406313	chr5_44815644_+	ncRNA_intronic
CAediting_406314	chr5_44815646_+	ncRNA_intronic
CAediting_406315	chr5_44815651_+	ncRNA_intronic
CAediting_406316	chr5_44815657_+	ncRNA_intronic
CAediting_406317	chr5_44815660_+	ncRNA_intronic
CAediting_406318	chr5_44815662_+	ncRNA_intronic
CAediting_406319	chr5_44815663_+	ncRNA_intronic
CAediting_406320	chr5_44815664_+	ncRNA_intronic
CAediting_406321	chr5_44815666_+	ncRNA_intronic
CAediting_406322	chr5_44815669_+	ncRNA_intronic
CAediting_406323	chr5_44815670_+	ncRNA_intronic
CAediting_406324	chr5_44815671_+	ncRNA_intronic
CAediting_406325	chr5_44815675_+	ncRNA_intronic
CAediting_406326	chr5_44815701_+	ncRNA_intronic
CAediting_406327	chr5_44815702_+	ncRNA_intronic
CAediting_406328	chr5_44815707_+	ncRNA_intronic
CAediting_406329	chr5_44815711_+	ncRNA_intronic
CAediting_406330	chr5_44815724_+	ncRNA_intronic
CAediting_406331	chr5_44815728_+	ncRNA_intronic
CAediting_406332	chr5_44815730_+	ncRNA_intronic
CAediting_406333	chr5_44815731_+	ncRNA_intronic
CAediting_406334	chr5_44815734_+	ncRNA_intronic
CAediting_406335	chr5_44815743_+	ncRNA_intronic
CAediting_406336	chr5_44815750_+	ncRNA_intronic
CAediting_406337	chr5_44815754_+	ncRNA_intronic
CAediting_406338	chr5_44815763_+	ncRNA_intronic
CAediting_406339	chr5_44815767_+	ncRNA_intronic
CAediting_406340	chr5_44815768_+	ncRNA_intronic
CAediting_406341	chr5_44815772_+	ncRNA_intronic
CAediting_406342	chr5_44815792_+	ncRNA_intronic
CAediting_406343	chr5_44815809_+	ncRNA_intronic
CAediting_406344	chr5_44815810_+	ncRNA_intronic
CAediting_406345	chr5_44815812_+	ncRNA_intronic
CAediting_406346	chr5_44816227_+	ncRNA_intronic
CAediting_406347	chr5_44816252_+	ncRNA_intronic
CAediting_406348	chr5_44816273_+	ncRNA_intronic
CAediting_406349	chr5_44816278_+	ncRNA_intronic
CAediting_406350	chr5_44816281_+	ncRNA_intronic
CAediting_406351	chr5_44816290_+	ncRNA_intronic
CAediting_406352	chr5_44816303_+	ncRNA_intronic
CAediting_406353	chr5_44816304_+	ncRNA_intronic
CAediting_406354	chr5_44816308_+	ncRNA_intronic
CAediting_406355	chr5_44816321_+	ncRNA_intronic
CAediting_406356	chr5_44816330_+	ncRNA_intronic
CAediting_406357	chr5_44816333_+	ncRNA_intronic
CAediting_406358	chr5_44816338_+	ncRNA_intronic
CAediting_406359	chr5_44816347_+	ncRNA_intronic
CAediting_406360	chr5_44816349_+	ncRNA_intronic
CAediting_406361	chr5_44816357_+	ncRNA_intronic
CAediting_406362	chr5_44816373_+	ncRNA_intronic
CAediting_406363	chr5_44816374_+	ncRNA_intronic
CAediting_406364	chr5_44816383_+	ncRNA_intronic
CAediting_406365	chr5_44816387_+	ncRNA_intronic
CAediting_406366	chr5_44816388_+	ncRNA_intronic
CAediting_406367	chr5_44816390_+	ncRNA_intronic
CAediting_406368	chr5_44816392_+	ncRNA_intronic
CAediting_406369	chr5_44816394_+	ncRNA_intronic
CAediting_406370	chr5_44816407_+	ncRNA_intronic
CAediting_406371	chr5_44816416_+	ncRNA_intronic
CAediting_406372	chr5_44816429_+	ncRNA_intronic
CAediting_406373	chr5_44816436_+	ncRNA_intronic
CAediting_406374	chr5_44816441_+	ncRNA_splicing
CAediting_406375	chr5_44816446_+	ncRNA_exonic
CAediting_406376	chr5_44816454_+	ncRNA_exonic
CAediting_406377	chr5_44816467_+	ncRNA_exonic
CAediting_406378	chr5_44816468_+	ncRNA_exonic
CAediting_406379	chr5_44816469_+	ncRNA_exonic
CAediting_406380	chr5_44816481_+	ncRNA_exonic
CAediting_406381	chr5_44816483_+	ncRNA_exonic
CAediting_406382	chr5_44816490_+	ncRNA_exonic
CAediting_406383	chr5_44819729_+	ncRNA_exonic
CAediting_406384	chr5_44819736_+	ncRNA_exonic
CAediting_406385	chr5_44819771_+	ncRNA_exonic
CAediting_406386	chr5_44819781_+	ncRNA_exonic
CAediting_406387	chr5_44819786_+	ncRNA_exonic
CAediting_406388	chr5_44819806_+	ncRNA_exonic
CAediting_406389	chr5_44819807_+	ncRNA_exonic
CAediting_406390	chr5_44819810_+	ncRNA_exonic
CAediting_406391	chr5_44819824_+	ncRNA_exonic
CAediting_406392	chr5_44819836_+	ncRNA_exonic
CAediting_406393	chr5_44819843_+	ncRNA_exonic
CAediting_406394	chr5_44819869_+	ncRNA_exonic
CAediting_406395	chr5_44819875_+	ncRNA_exonic
CAediting_406396	chr5_44819879_+	ncRNA_exonic
CAediting_406397	chr5_44819880_+	ncRNA_exonic
CAediting_406398	chr5_44819883_+	ncRNA_exonic
CAediting_406399	chr5_44819890_+	ncRNA_exonic
CAediting_406400	chr5_44819902_+	ncRNA_exonic
CAediting_406401	chr5_44819914_+	ncRNA_exonic
CAediting_406402	chr5_44819927_+	ncRNA_exonic
CAediting_406403	chr5_44819928_+	ncRNA_exonic
CAediting_406404	chr5_44819952_+	ncRNA_exonic
CAediting_406405	chr5_44819953_+	ncRNA_exonic
CAediting_406406	chr5_44819954_+	ncRNA_exonic
CAediting_406407	chr5_44819966_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_406297	chr5_44815550_+	SINE	Alu	AluSz6
CAediting_406298	chr5_44815566_+	SINE	Alu	AluSz6
CAediting_406299	chr5_44815567_+	SINE	Alu	AluSz6
CAediting_406300	chr5_44815572_+	SINE	Alu	AluSz6
CAediting_406301	chr5_44815573_+	SINE	Alu	AluSz6
CAediting_406302	chr5_44815575_+	SINE	Alu	AluSz6
CAediting_406303	chr5_44815588_+	SINE	Alu	AluSz6
CAediting_406304	chr5_44815607_+	SINE	Alu	AluSz6
CAediting_406305	chr5_44815612_+	SINE	Alu	AluSz6
CAediting_406306	chr5_44815615_+	SINE	Alu	AluSz6
CAediting_406307	chr5_44815621_+	SINE	Alu	AluSz6
CAediting_406308	chr5_44815623_+	SINE	Alu	AluSz6
CAediting_406309	chr5_44815626_+	SINE	Alu	AluSz6
CAediting_406310	chr5_44815636_+	SINE	Alu	AluSz6
CAediting_406311	chr5_44815638_+	SINE	Alu	AluSz6
CAediting_406312	chr5_44815643_+	SINE	Alu	AluSz6
CAediting_406313	chr5_44815644_+	SINE	Alu	AluSz6
CAediting_406314	chr5_44815646_+	SINE	Alu	AluSz6
CAediting_406315	chr5_44815651_+	SINE	Alu	AluSz6
CAediting_406316	chr5_44815657_+	SINE	Alu	AluSz6
CAediting_406317	chr5_44815660_+	SINE	Alu	AluSz6
CAediting_406318	chr5_44815662_+	SINE	Alu	AluSz6
CAediting_406319	chr5_44815663_+	SINE	Alu	AluSz6
CAediting_406320	chr5_44815664_+	SINE	Alu	AluSz6
CAediting_406321	chr5_44815666_+	SINE	Alu	AluSz6
CAediting_406322	chr5_44815669_+	SINE	Alu	AluSz6
CAediting_406323	chr5_44815670_+	SINE	Alu	AluSz6
CAediting_406324	chr5_44815671_+	SINE	Alu	AluSz6
CAediting_406325	chr5_44815675_+	SINE	Alu	AluSz6
CAediting_406326	chr5_44815701_+	SINE	Alu	AluSz6
CAediting_406327	chr5_44815702_+	SINE	Alu	AluSz6
CAediting_406328	chr5_44815707_+	SINE	Alu	AluSz6
CAediting_406329	chr5_44815711_+	SINE	Alu	AluSz6
CAediting_406330	chr5_44815724_+	SINE	Alu	AluSz6
CAediting_406331	chr5_44815728_+	SINE	Alu	AluSz6
CAediting_406332	chr5_44815730_+	SINE	Alu	AluSz6
CAediting_406333	chr5_44815731_+	SINE	Alu	AluSz6
CAediting_406334	chr5_44815734_+	SINE	Alu	AluSz6
CAediting_406335	chr5_44815743_+	SINE	Alu	AluSz6
CAediting_406336	chr5_44815750_+	SINE	Alu	AluSz6
CAediting_406337	chr5_44815754_+	SINE	Alu	AluSz6
CAediting_406338	chr5_44815763_+	SINE	Alu	AluSz6
CAediting_406339	chr5_44815767_+	SINE	Alu	AluSz6
CAediting_406340	chr5_44815768_+	SINE	Alu	AluSz6
CAediting_406341	chr5_44815772_+	SINE	Alu	AluSz6
CAediting_406342	chr5_44815792_+	SINE	Alu	AluSz6
CAediting_406343	chr5_44815809_+	SINE	Alu	AluSz6
CAediting_406344	chr5_44815810_+	SINE	Alu	AluSz6
CAediting_406345	chr5_44815812_+	SINE	Alu	AluSz6
CAediting_406346	chr5_44816227_+	SINE	Alu	AluSp
CAediting_406347	chr5_44816252_+	SINE	Alu	AluSp
CAediting_406348	chr5_44816273_+	SINE	Alu	AluSp
CAediting_406349	chr5_44816278_+	SINE	Alu	AluSp
CAediting_406350	chr5_44816281_+	SINE	Alu	AluSp
CAediting_406351	chr5_44816290_+	SINE	Alu	AluSp
CAediting_406352	chr5_44816303_+	SINE	Alu	AluSp
CAediting_406353	chr5_44816304_+	SINE	Alu	AluSp
CAediting_406354	chr5_44816308_+	SINE	Alu	AluSp
CAediting_406355	chr5_44816321_+	SINE	Alu	AluSp
CAediting_406356	chr5_44816330_+	SINE	Alu	AluSp
CAediting_406357	chr5_44816333_+	SINE	Alu	AluSp
CAediting_406358	chr5_44816338_+	SINE	Alu	AluSp
CAediting_406359	chr5_44816347_+	SINE	Alu	AluSp
CAediting_406360	chr5_44816349_+	SINE	Alu	AluSp
CAediting_406361	chr5_44816357_+	SINE	Alu	AluSp
CAediting_406362	chr5_44816373_+	SINE	Alu	AluSp
CAediting_406363	chr5_44816374_+	SINE	Alu	AluSp
CAediting_406364	chr5_44816383_+	SINE	Alu	AluSp
CAediting_406365	chr5_44816387_+	SINE	Alu	AluSp
CAediting_406366	chr5_44816388_+	SINE	Alu	AluSp
CAediting_406367	chr5_44816390_+	SINE	Alu	AluSp
CAediting_406368	chr5_44816392_+	SINE	Alu	AluSp
CAediting_406369	chr5_44816394_+	SINE	Alu	AluSp
CAediting_406370	chr5_44816407_+	SINE	Alu	AluSp
CAediting_406371	chr5_44816416_+	SINE	Alu	AluSp
CAediting_406372	chr5_44816429_+	SINE	Alu	AluSp
CAediting_406373	chr5_44816436_+	SINE	Alu	AluSp
CAediting_406374	chr5_44816441_+	SINE	Alu	AluSp
CAediting_406375	chr5_44816446_+	SINE	Alu	AluSp
CAediting_406376	chr5_44816454_+	SINE	Alu	AluSp
CAediting_406377	chr5_44816467_+	SINE	Alu	AluSp
CAediting_406378	chr5_44816468_+	SINE	Alu	AluSp
CAediting_406379	chr5_44816469_+	SINE	Alu	AluSp
CAediting_406380	chr5_44816481_+	SINE	Alu	AluSp
CAediting_406381	chr5_44816483_+	SINE	Alu	AluSp
CAediting_406382	chr5_44816490_+	SINE	Alu	AluSp
CAediting_406383	chr5_44819729_+	SINE	Alu	AluSz
CAediting_406384	chr5_44819736_+	SINE	Alu	AluSz
CAediting_406385	chr5_44819771_+	SINE	Alu	AluSz
CAediting_406386	chr5_44819781_+	SINE	Alu	AluSz
CAediting_406387	chr5_44819786_+	SINE	Alu	AluSz
CAediting_406388	chr5_44819806_+	SINE	Alu	AluSz
CAediting_406389	chr5_44819807_+	SINE	Alu	AluSz
CAediting_406390	chr5_44819810_+	SINE	Alu	AluSz
CAediting_406391	chr5_44819824_+	SINE	Alu	AluSz
CAediting_406392	chr5_44819836_+	SINE	Alu	AluSz
CAediting_406393	chr5_44819843_+	SINE	Alu	AluSz
CAediting_406394	chr5_44819869_+	SINE	Alu	AluSz
CAediting_406395	chr5_44819875_+	SINE	Alu	AluSz
CAediting_406396	chr5_44819879_+	SINE	Alu	AluSz
CAediting_406397	chr5_44819880_+	SINE	Alu	AluSz
CAediting_406398	chr5_44819883_+	SINE	Alu	AluSz
CAediting_406399	chr5_44819890_+	SINE	Alu	AluSz
CAediting_406400	chr5_44819902_+	SINE	Alu	AluSz
CAediting_406401	chr5_44819914_+	SINE	Alu	AluSz
CAediting_406402	chr5_44819927_+	SINE	Alu	AluSz
CAediting_406403	chr5_44819928_+	SINE	Alu	AluSz
CAediting_406404	chr5_44819952_+	SINE	Alu	AluSz
CAediting_406405	chr5_44819953_+	SINE	Alu	AluSz
CAediting_406406	chr5_44819954_+	SINE	Alu	AluSz
CAediting_406407	chr5_44819966_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for MRPS30

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_406298	chr5_44815566_+	44815561:44815569	5SS	0+3i	CCTGTAATC	-6.49	CCTGTGATC	-9.33
IR	CAediting_406299	chr5_44815567_+	44815561:44815569	5SS	0+4i	CCTGTAATC	-6.49	CCTGTAGTC	-11.91
IR	CAediting_406372	chr5_44816429_+	44816422:44816444	3SS	0+13i	GTCTCGAACTCCTGACCTCAGGT	-11.52	GTCTCGAGCTCCTGACCTCAGGT	-13.83
IR	CAediting_406373	chr5_44816436_+	44816422:44816444	3SS	0+6i	GTCTCGAACTCCTGACCTCAGGT	-11.52	GTCTCGAACTCCTGGCCTCAGGT	-11.83
IR	CAediting_406374	chr5_44816441_+	44816422:44816444	3SS	0+1i	GTCTCGAACTCCTGACCTCAGGT	-11.52	GTCTCGAACTCCTGACCTCGGGT	-2.77

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000112996.8.MRPS30.

Correlation between RNA A-to-I editing and PSI for ENSG00000112996.8.MRPS30.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MRPS30

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

COAD.CAediting_406298.ENSG00000112996.MRPS30.png
Soverview

LUAD.CAediting_406322.ENSG00000112996.MRPS30.png
Soverview

OV.CAediting_406329.ENSG00000112996.MRPS30.png
Soverview

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Protein coding region RNA A-to-I editings for MRPS30

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MRPS30

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MRPS30

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000230914.4	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_406297	ENST00000230914.4	chr5_44815550_+	-1071.40	-1072.10	-1103.90
CAediting_406375	ENST00000230914.4	chr5_44816446_+	-1071.60	-1072.10	-1103.90
CAediting_406376	ENST00000230914.4	chr5_44816454_+	-1071.70	-1072.10	-1103.90
CAediting_406377	ENST00000230914.4	chr5_44816467_+	-1077.70	-1072.10	-1103.90
CAediting_406378	ENST00000230914.4	chr5_44816468_+	-1074.00	-1072.10	-1103.90
CAediting_406379	ENST00000230914.4	chr5_44816469_+	-1078.30	-1072.10	-1103.90
CAediting_406380	ENST00000230914.4	chr5_44816481_+	-1071.10	-1072.10	-1103.90
CAediting_406381	ENST00000230914.4	chr5_44816483_+	-1071.40	-1072.10	-1103.90
CAediting_406382	ENST00000230914.4	chr5_44816490_+	-1071.20	-1072.10	-1103.90
CAediting_406383	ENST00000230914.4	chr5_44819729_+	-1074.60	-1072.10	-1103.90
CAediting_406384	ENST00000230914.4	chr5_44819736_+	-1071.20	-1072.10	-1103.90
CAediting_406385	ENST00000230914.4	chr5_44819771_+	-1073.20	-1072.10	-1103.90
CAediting_406386	ENST00000230914.4	chr5_44819781_+	-1072.10	-1072.10	-1103.90
CAediting_406387	ENST00000230914.4	chr5_44819786_+	-1072.10	-1072.10	-1103.90
CAediting_406388	ENST00000230914.4	chr5_44819806_+	-1071.90	-1072.10	-1103.90
CAediting_406389	ENST00000230914.4	chr5_44819807_+	-1076.00	-1072.10	-1103.90
CAediting_406390	ENST00000230914.4	chr5_44819810_+	-1073.00	-1072.10	-1103.90
CAediting_406391	ENST00000230914.4	chr5_44819824_+	-1074.10	-1072.10	-1103.90
CAediting_406392	ENST00000230914.4	chr5_44819836_+	-1074.50	-1072.10	-1103.90
CAediting_406393	ENST00000230914.4	chr5_44819843_+	-1075.60	-1072.10	-1103.90
CAediting_406394	ENST00000230914.4	chr5_44819869_+	-1072.10	-1072.10	-1103.90
CAediting_406395	ENST00000230914.4	chr5_44819875_+	-1076.10	-1072.10	-1103.90
CAediting_406396	ENST00000230914.4	chr5_44819879_+	-1072.20	-1072.10	-1103.90
CAediting_406397	ENST00000230914.4	chr5_44819880_+	-1075.70	-1072.10	-1103.90
CAediting_406398	ENST00000230914.4	chr5_44819883_+	-1072.10	-1072.10	-1103.90
CAediting_406399	ENST00000230914.4	chr5_44819890_+	-1072.80	-1072.10	-1103.90
CAediting_406400	ENST00000230914.4	chr5_44819902_+	-1072.10	-1072.10	-1103.90
CAediting_406401	ENST00000230914.4	chr5_44819914_+	-1073.80	-1072.10	-1103.90
CAediting_406402	ENST00000230914.4	chr5_44819927_+	-1071.80	-1072.10	-1103.90
CAediting_406403	ENST00000230914.4	chr5_44819928_+	-1072.10	-1072.10	-1103.90
CAediting_406404	ENST00000230914.4	chr5_44819952_+	-1071.40	-1072.10	-1103.90
CAediting_406405	ENST00000230914.4	chr5_44819953_+	-1075.00	-1072.10	-1103.90
CAediting_406406	ENST00000230914.4	chr5_44819954_+	-1073.90	-1072.10	-1103.90
CAediting_406407	ENST00000230914.4	chr5_44819966_+	-1072.30	-1072.10	-1103.90

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Relation with ADAR for MRPS30

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_406298	chr5_44815566_+	0.000733723134520489	0.298114756554758	.	.	.	.
BRCA	CAediting_406298	chr5_44815566_+	1.10140778266643e-16	0.308972800066002	.	.	.	.
LUAD	CAediting_406298	chr5_44815566_+	0.00263805692038048	0.29194115355236	.	.	.	.
LUSC	CAediting_406298	chr5_44815566_+	0.000794183527434418	0.252026327732458	.	.	.	.
HNSC	CAediting_406298	chr5_44815566_+	.	.	5.70393111790571e-05	0.353283942640208	.	.
STAD	CAediting_406298	chr5_44815566_+	0.0349804105820492	0.171744280251783	.	.	.	.
KIRC	CAediting_406298	chr5_44815566_+	0.0136371011106406	0.153108043517459	.	.	0.0457562043893991	0.124246630120142
OV	CAediting_406298	chr5_44815566_+	0.00170146968591126	0.297164788159319	.	.	.	.
SKCM	CAediting_406298	chr5_44815566_+	2.97265884533592e-05	0.337134225270919	.	.	.	.
BRCA	CAediting_406299	chr5_44815567_+	3.20974608243205e-05	0.182308403836131	.	.	.	.
HNSC	CAediting_406299	chr5_44815567_+	.	.	0.0229323739645755	0.26970448251767	.	.
BLCA	CAediting_406301	chr5_44815573_+	0.0109491919847618	0.346836361013827	.	.	.	.
BRCA	CAediting_406301	chr5_44815573_+	7.80683703991773e-17	0.294333001895743	.	.	.	.
LUAD	CAediting_406301	chr5_44815573_+	0.00672163863580064	0.234829182726876	.	.	.	.
LUSC	CAediting_406301	chr5_44815573_+	0.00021596903307511	0.238600599057045	.	.	.	.
HNSC	CAediting_406301	chr5_44815573_+	0.00204802832203519	0.25489523478934	0.00137842548145968	0.264145019698902	.	.
STAD	CAediting_406301	chr5_44815573_+	0.0354547285752473	0.159564710628969	.	.	.	.
OV	CAediting_406301	chr5_44815573_+	0.000388001168615988	0.321343718123701	.	.	.	.
SKCM	CAediting_406301	chr5_44815573_+	2.9431531479367e-05	0.290126963602117	.	.	.	.
BRCA	CAediting_406308	chr5_44815623_+	0.00140595097067648	0.139958028409417	.	.	.	.
LUAD	CAediting_406308	chr5_44815623_+	0.0287845589684036	0.252599697634876	.	.	.	.
COAD	CAediting_406308	chr5_44815623_+	0.0194496196362061	0.2870427551433	.	.	.	.
HNSC	CAediting_406308	chr5_44815623_+	.	.	0.0487686350512416	0.201694430169883	.	.
ESCA	CAediting_406308	chr5_44815623_+	0.00590364680109798	0.315051485425919	.	.	.	.
BRCA	CAediting_406321	chr5_44815666_+	3.68196278517049e-15	0.352763817404312	.	.	.	.
LUAD	CAediting_406321	chr5_44815666_+	0.0283228261200523	0.295817619441246	.	.	.	.
HNSC	CAediting_406321	chr5_44815666_+	.	.	0.0017942969778965	0.377232335098196	.	.
STAD	CAediting_406321	chr5_44815666_+	.	.	0.00538839031350872	0.287898613609747	.	.
ESCA	CAediting_406321	chr5_44815666_+	0.0170453532761213	0.274770184221258	.	.	.	.
OV	CAediting_406321	chr5_44815666_+	0.00421475477043007	0.347817336197761	.	.	.	.
BRCA	CAediting_406322	chr5_44815669_+	2.07280809309071e-12	0.247531269790187	.	.	.	.
COAD	CAediting_406322	chr5_44815669_+	0.014463657518718	0.186736506877164	.	.	.	.
LUSC	CAediting_406322	chr5_44815669_+	0.000211744062974417	0.221619623886424	.	.	.	.
PRAD	CAediting_406322	chr5_44815669_+	0.00462559125167838	0.189842916950873	.	.	.	.
HNSC	CAediting_406322	chr5_44815669_+	0.00354187216904331	0.223152611458692	0.0345672995632464	0.162691309021456	.	.
KIRC	CAediting_406322	chr5_44815669_+	0.0200226350208356	0.131006470443159	.	.	.	.
KIRP	CAediting_406322	chr5_44815669_+	0.00116612433951595	0.286050869414698	.	.	.	.
SKCM	CAediting_406322	chr5_44815669_+	0.000398776286340594	0.223577014001093	.	.	.	.
BRCA	CAediting_406323	chr5_44815670_+	.	.	0.0161635364425391	0.261758043839681	.	.
LGG	CAediting_406325	chr5_44815675_+	0.00370942784856301	0.188601015439441	.	.	.	.
BRCA	CAediting_406325	chr5_44815675_+	9.10673073715948e-29	0.394152354199001	.	.	.	.
CESC	CAediting_406325	chr5_44815675_+	0.0146656234845025	0.343266887943247	.	.	.	.
LUAD	CAediting_406325	chr5_44815675_+	0.00436726678530749	0.249407410178218	.	.	.	.
COAD	CAediting_406325	chr5_44815675_+	0.00210797095187551	0.285101937028625	.	.	.	.
LUSC	CAediting_406325	chr5_44815675_+	0.00435184052116918	0.189428517110139	.	.	.	.
HNSC	CAediting_406325	chr5_44815675_+	0.000935507743492087	0.266625429992238	0.00643703015506865	0.22081964113672	.	.
STAD	CAediting_406325	chr5_44815675_+	0.00394418831402247	0.223266942802256	.	.	.	.
ESCA	CAediting_406325	chr5_44815675_+	0.000868784463225409	0.311676649480125	.	.	.	.
OV	CAediting_406325	chr5_44815675_+	0.00740931997857369	0.255173975112008	.	.	.	.
SKCM	CAediting_406325	chr5_44815675_+	0.000203273261768485	0.263683446408646	.	.	.	.
BRCA	CAediting_406329	chr5_44815711_+	1.48942406386201e-08	0.322754489497148	.	.	.	.
LUSC	CAediting_406329	chr5_44815711_+	0.00818935259547254	0.346961786688711	.	.	.	.
BRCA	CAediting_406347	chr5_44816252_+	1.58615534902459e-17	0.299317385723032	.	.	.	.
CESC	CAediting_406347	chr5_44816252_+	0.00537689456608405	0.302913851302611	.	.	.	.
LUSC	CAediting_406347	chr5_44816252_+	2.97153722828407e-07	0.320405218820784	.	.	.	.
PRAD	CAediting_406347	chr5_44816252_+	0.0341370122976469	0.154194673535504	.	.	.	.
HNSC	CAediting_406347	chr5_44816252_+	0.00287713217620644	0.24418525519911	0.00621093099044819	0.224721365987791	.	.
STAD	CAediting_406347	chr5_44816252_+	0.000956930932620538	0.291891343578573	.	.	.	.
THCA	CAediting_406347	chr5_44816252_+	0.0150840680286571	0.146698544635104	.	.	.	.
ESCA	CAediting_406347	chr5_44816252_+	.	.	0.0107429647739145	0.275394467361412	.	.
OV	CAediting_406347	chr5_44816252_+	0.000849509872616679	0.275027208986999	.	.	.	.
SKCM	CAediting_406347	chr5_44816252_+	2.77109289755705e-05	0.295335846583437	.	.	.	.
BRCA	CAediting_406353	chr5_44816304_+	1.81679119474562e-05	0.190597084904479	.	.	.	.
HNSC	CAediting_406353	chr5_44816304_+	.	.	0.0181971901273456	0.279615952431592	.	.
ESCA	CAediting_406353	chr5_44816304_+	0.00511162481265887	0.359915970029842	.	.	.	.
OV	CAediting_406353	chr5_44816304_+	.	.	.	.	0.00524461315322227	0.274464282159886
BRCA	CAediting_406374	chr5_44816441_+	0.0148380854622706	0.176988065488279	.	.	.	.
OV	CAediting_406378	chr5_44816468_+	0.00261727890673211	0.251590648794396	.	.	.	.
BRCA	CAediting_406379	chr5_44816469_+	0.0166990726324021	0.139965630373391	.	.	.	.
LGG	CAediting_406380	chr5_44816481_+	0.00684453560785322	0.320426743680945	.	.	.	.
BRCA	CAediting_406380	chr5_44816481_+	8.82246037624262e-11	0.254050846909822	.	.	.	.
COAD	CAediting_406380	chr5_44816481_+	0.000706706067418847	0.409464939168458	.	.	.	.
HNSC	CAediting_406380	chr5_44816481_+	.	.	0.0269598877269331	0.288020379077105	.	.
SKCM	CAediting_406380	chr5_44816481_+	0.0262197691947941	0.208204864674602	.	.	.	.
BRCA	CAediting_406389	chr5_44819807_+	.	.	.	.	0.00693989757007319	0.206953146737995
LIHC	CAediting_406389	chr5_44819807_+	.	.	.	.	0.0191271624002246	0.256748914943342
BLCA	CAediting_406390	chr5_44819810_+	0.0476055275541571	0.265915819182692	.	.	.	.
LUAD	CAediting_406390	chr5_44819810_+	0.00364721975756346	0.267873189051369	.	.	.	.

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Relation with cancer stages for MRPS30

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_406321	chr5_44815666_+	0.00311670826576436	0.137691346426982
BRCA	pathologic_stage	CAediting_406324	chr5_44815671_+	0.028248601125227	0.2263579118956
BRCA	pathologic_stage	CAediting_406329	chr5_44815711_+	0.0307057376618284	0.128259395864889
BRCA	pathologic_stage	CAediting_406353	chr5_44816304_+	0.0129539728843192	0.112654402577249
BRCA	pathologic_stage	CAediting_406374	chr5_44816441_+	0.0268236946070222	0.163239704961722
BRCA	pathologic_stage	CAediting_406379	chr5_44816469_+	0.0471754850590215	0.117057546721233
HNSC	pathologic_stage	CAediting_406308	chr5_44815623_+	0.0252672089058618	0.250083834160368
KIRC	pathologic_stage	CAediting_406298	chr5_44815566_+	0.00901760118929214	0.161974229003572
KIRC	pathologic_stage	CAediting_406299	chr5_44815567_+	0.00851480978715196	0.201200815048602
KIRC	pathologic_stage	CAediting_406301	chr5_44815573_+	0.00762208973961112	0.14799741071864
KIRC	pathologic_stage	CAediting_406347	chr5_44816252_+	0.0384311117544472	0.120810172426441
KIRC	pathologic_stage	CAediting_406380	chr5_44816481_+	0.0247881192117263	0.159109062161949
LIHC	pathologic_stage	CAediting_406322	chr5_44815669_+	0.0483463379941421	0.283546193456156
THCA	pathologic_stage	CAediting_406347	chr5_44816252_+	0.000349429344446174	0.216426382081655

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Relation with survival for MRPS30

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
HNSC	CAediting_406301	chr5_44815573_+	0.0115793216895057	0.00235791	15.2899
KIRP	CAediting_406322	chr5_44815669_+	0.0367696777459167	0.00182648	141869

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RelatedDrugs for MRPS30

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MRPS30

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene