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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SLC26A1 (CAeditome ID:10861) |
Gene summary for SLC26A1 |
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Gene information | Gene symbol | SLC26A1 | Gene ID | 10861 |
Gene name | solute carrier family 26 member 1 | |
Synonyms | CAON|EDM4|SAT-1|SAT1 | |
Cytomap | 4p16.3 | |
Type of gene | protein-coding | |
Description | sulfate anion transporter 1solute carrier family 26 (anion exchanger), member 1solute carrier family 26 (sulfate transporter), member 1sulfate anion tranporter AT1sulfate/anion transporter SAT-1 protein | |
Modification date | 20210518 | |
UniProtAcc | Q9H2B4 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SLC26A1 |
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CAediting_344287(981578, -), CAediting_344288(981931, -), CAediting_344289(984568, -), CAediting_344290(984586, -), CAediting_344291(984587, -), CAediting_344292(984605, -), CAediting_344293(984659, -), CAediting_344294(984661, -), CAediting_344295(984665, -), CAediting_344296(984668, -), CAediting_344297(984674, -), CAediting_344298(984682, -), CAediting_344299(984687, -), CAediting_344300(984707, -), CAediting_344301(984709, -), CAediting_344302(984719, -), CAediting_344303(984722, -), CAediting_344304(984731, -), CAediting_344305(984742, -), CAediting_344306(984743, -), CAediting_344307(984758, -), CAediting_344308(984791, -), CAediting_344309(985925, -), CAediting_344310(985927, -), CAediting_344311(985952, -), CAediting_344312(985954, -), CAediting_344313(985967, -), CAediting_344314(985974, -), CAediting_344315(985980, -), CAediting_344316(985982, -), CAediting_344317(985988, -), CAediting_344318(986039, -), CAediting_344319(986047, -), CAediting_344320(986073, -), CAediting_344321(986084, -), CAediting_344322(986154, -), CAediting_344323(986160, -), CAediting_344324(986165, -), CAediting_344325(986168, -), CAediting_344326(986694, -), CAediting_344327(986705, -), |
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RNA editing positional annotations for SLC26A1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_344287 | chr4_981578_- | intronic |
CAediting_344288 | chr4_981931_- | intronic |
CAediting_344289 | chr4_984568_- | intronic |
CAediting_344290 | chr4_984586_- | intronic |
CAediting_344291 | chr4_984587_- | intronic |
CAediting_344292 | chr4_984605_- | intronic |
CAediting_344293 | chr4_984659_- | intronic |
CAediting_344294 | chr4_984661_- | intronic |
CAediting_344295 | chr4_984665_- | intronic |
CAediting_344296 | chr4_984668_- | intronic |
CAediting_344297 | chr4_984674_- | intronic |
CAediting_344298 | chr4_984682_- | intronic |
CAediting_344299 | chr4_984687_- | intronic |
CAediting_344300 | chr4_984707_- | intronic |
CAediting_344301 | chr4_984709_- | intronic |
CAediting_344302 | chr4_984719_- | intronic |
CAediting_344303 | chr4_984722_- | intronic |
CAediting_344304 | chr4_984731_- | intronic |
CAediting_344305 | chr4_984742_- | intronic |
CAediting_344306 | chr4_984743_- | intronic |
CAediting_344307 | chr4_984758_- | intronic |
CAediting_344308 | chr4_984791_- | intronic |
CAediting_344309 | chr4_985925_- | intronic |
CAediting_344310 | chr4_985927_- | intronic |
CAediting_344311 | chr4_985952_- | intronic |
CAediting_344312 | chr4_985954_- | intronic |
CAediting_344313 | chr4_985967_- | intronic |
CAediting_344314 | chr4_985974_- | intronic |
CAediting_344315 | chr4_985980_- | intronic |
CAediting_344316 | chr4_985982_- | intronic |
CAediting_344317 | chr4_985988_- | intronic |
CAediting_344318 | chr4_986039_- | intronic |
CAediting_344319 | chr4_986047_- | intronic |
CAediting_344320 | chr4_986073_- | intronic |
CAediting_344321 | chr4_986084_- | intronic |
CAediting_344322 | chr4_986154_- | intronic |
CAediting_344323 | chr4_986160_- | intronic |
CAediting_344324 | chr4_986165_- | intronic |
CAediting_344325 | chr4_986168_- | intronic |
CAediting_344326 | chr4_986694_- | intronic |
CAediting_344327 | chr4_986705_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_344287 | chr4_981578_- | SINE | Alu | AluJb |
CAediting_344288 | chr4_981931_- | SINE | Alu | AluY |
CAediting_344289 | chr4_984568_- | SINE | Alu | AluSz |
CAediting_344290 | chr4_984586_- | SINE | Alu | AluSz |
CAediting_344291 | chr4_984587_- | SINE | Alu | AluSz |
CAediting_344292 | chr4_984605_- | SINE | Alu | AluSz |
CAediting_344293 | chr4_984659_- | SINE | Alu | AluSz |
CAediting_344294 | chr4_984661_- | SINE | Alu | AluSz |
CAediting_344295 | chr4_984665_- | SINE | Alu | AluSz |
CAediting_344296 | chr4_984668_- | SINE | Alu | AluSz |
CAediting_344297 | chr4_984674_- | SINE | Alu | AluSz |
CAediting_344298 | chr4_984682_- | SINE | Alu | AluSz |
CAediting_344299 | chr4_984687_- | SINE | Alu | AluSz |
CAediting_344300 | chr4_984707_- | SINE | Alu | AluSz |
CAediting_344301 | chr4_984709_- | SINE | Alu | AluSz |
CAediting_344302 | chr4_984719_- | SINE | Alu | AluSz |
CAediting_344303 | chr4_984722_- | SINE | Alu | AluSz |
CAediting_344304 | chr4_984731_- | SINE | Alu | AluSz |
CAediting_344305 | chr4_984742_- | SINE | Alu | AluSz |
CAediting_344306 | chr4_984743_- | SINE | Alu | AluSz |
CAediting_344307 | chr4_984758_- | SINE | Alu | AluSz |
CAediting_344308 | chr4_984791_- | SINE | Alu | AluSz |
CAediting_344309 | chr4_985925_- | SINE | Alu | AluJr |
CAediting_344310 | chr4_985927_- | SINE | Alu | AluJr |
CAediting_344311 | chr4_985952_- | SINE | Alu | AluJr |
CAediting_344312 | chr4_985954_- | SINE | Alu | AluJr |
CAediting_344313 | chr4_985967_- | SINE | Alu | AluJr |
CAediting_344314 | chr4_985974_- | SINE | Alu | AluJr |
CAediting_344315 | chr4_985980_- | SINE | Alu | AluJr |
CAediting_344316 | chr4_985982_- | SINE | Alu | AluJr |
CAediting_344317 | chr4_985988_- | SINE | Alu | AluJr |
CAediting_344318 | chr4_986039_- | SINE | Alu | AluJr |
CAediting_344319 | chr4_986047_- | SINE | Alu | AluJr |
CAediting_344320 | chr4_986073_- | SINE | Alu | AluJr |
CAediting_344321 | chr4_986084_- | SINE | Alu | AluJr |
CAediting_344322 | chr4_986154_- | SINE | Alu | AluJr |
CAediting_344323 | chr4_986160_- | SINE | Alu | AluJr |
CAediting_344324 | chr4_986165_- | SINE | Alu | AluJr |
CAediting_344325 | chr4_986168_- | SINE | Alu | AluJr |
CAediting_344326 | chr4_986694_- | SINE | Alu | AluSz6 |
CAediting_344327 | chr4_986705_- | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for SLC26A1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC26A1 |
![]() * The grey color means N/A. |
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KIRC.CAediting_344304.ENSG00000145217.SLC26A1.png ![]() |
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Protein coding region RNA A-to-I editings for SLC26A1 |
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The effects of the RNA editing to the miRNA binding sites for SLC26A1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000145217.12 | ENST00000361661 | hsa-miR-4512 | 988373 | 988380 | 8mer-1a | 988373 | 988393 | 145 | -20.19 |
CAediting_77128 | chr1_85133844_+ | ENSG00000145217.12 | ENST00000361661 | hsa-miR-4423-3p | 988440 | 988446 | 7mer-m8 | 988439 | 988459 | 145 | -16.84 |
CAediting_1399425 | chr20_1392958_- | ENSG00000145217.12 | ENST00000361661 | hsa-miR-6869-5p | 988245 | 988251 | 7mer-m8 | 988244 | 988263 | 156 | -26.06 |
CAediting_1524209 | chrX_134546392_- | ENSG00000145217.12 | ENST00000361661 | hsa-miR-503-5p | 987699 | 987705 | 7mer-m8 | 987698 | 987719 | 147 | -22.72 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000145217.12 | ENST00000361661 | hsa-miR-4512 | 988666 | 988672 | 7mer-m8 | 988665 | 988685 | 152 | -23.77 |
CAediting_580943 | chr7_100356700_+ | ENSG00000145217.12 | ENST00000361661 | hsa-miR-6840-3p | 988793 | 988799 | 7mer-m8 | 988792 | 988811 | 145 | -22.89 |
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The effects of the RNA editing to the stability of the RNA structures for SLC26A1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SLC26A1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LIHC | CAediting_344314 | chr4_985974_- | 0.00275276902627984 | 0.313751759865821 | . | . | . | . |
LIHC | CAediting_344316 | chr4_985982_- | 1.11722129306232e-07 | 0.306979677340333 | . | . | . | . |
KIRC | CAediting_344316 | chr4_985982_- | 0.00975154838478164 | 0.233157173511576 | . | . | . | . |
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Relation with cancer stages for SLC26A1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SLC26A1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SLC26A1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC26A1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
SLC26A1 | C0451641 | Urolithiasis | 2 | CTD_human |
SLC26A1 | C1833683 | NEPHROLITHIASIS, CALCIUM OXALATE | 2 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
SLC26A1 | C0020500 | Hyperoxaluria | 1 | CTD_human |
SLC26A1 | C0027709 | Nephrocalcinosis | 1 | CTD_human |
SLC26A1 | C1298681 | Oxalosis | 1 | CTD_human |