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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

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Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TUBGCP2 (CAeditome ID:10844)

Gene summary for TUBGCP2

check button Gene summary
Gene informationGene symbol

TUBGCP2

Gene ID

10844

Gene nametubulin gamma complex associated protein 2
SynonymsALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97
Cytomap

10q26.3

Type of geneprotein-coding
Descriptiongamma-tubulin complex component 2gamma-ring complex protein 103 kDahGrip103spindle pole body protein Spc97 homolog
Modification date20210518
UniProtAcc

Q9BSJ2

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TUBGCP2

GO:0005654

Gamma-tubulin complex component 2

0000052

TUBGCP2

GO:0005813

Gamma-tubulin complex component 2

0000052

TUBGCP2

GO:0005813

Gamma-tubulin complex component 2

21399614

TUBGCP2

GO:0005815

Gamma-tubulin complex component 2

9566967


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RNA A-to-I events for TUBGCP2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000130640.12
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_790289(133284531, -), CAediting_790290(133284532, -), CAediting_790291(133284633, -), CAediting_790292(133290250, -), CAediting_790293(133290260, -), CAediting_790294(133294622, -), CAediting_790295(133294649, -), CAediting_790296(133294651, -), CAediting_790297(133294676, -), CAediting_790298(133294681, -), CAediting_790299(133294683, -), CAediting_790300(133294688, -), CAediting_790301(133294692, -), CAediting_790302(133294699, -), CAediting_790303(133294700, -), CAediting_790304(133294713, -), CAediting_790305(133294726, -), CAediting_790306(133294731, -), CAediting_790307(133294732, -), CAediting_790308(133294757, -), CAediting_790309(133294764, -), CAediting_790310(133294780, -), CAediting_790311(133294783, -), CAediting_790312(133294786, -), CAediting_790313(133294787, -), CAediting_790314(133294792, -), CAediting_790315(133294793, -), CAediting_790316(133294794, -), CAediting_790317(133294795, -), CAediting_790318(133294798, -), CAediting_790319(133294812, -), CAediting_790320(133295174, -), CAediting_790321(133295190, -), CAediting_790322(133295225, -), CAediting_790323(133295255, -), CAediting_790324(133295277, -), CAediting_790325(133295281, -), CAediting_790326(133295298, -), CAediting_790327(133295315, -), CAediting_790328(133295335, -), CAediting_790329(133295347, -), CAediting_790330(133295365, -), CAediting_790331(133295371, -), CAediting_790332(133295385, -), CAediting_790333(133295390, -), CAediting_790334(133295395, -), CAediting_790335(133295400, -), CAediting_790336(133295401, -), CAediting_790337(133295403, -), CAediting_790338(133295409, -), CAediting_790339(133295433, -), CAediting_790340(133295441, -), CAediting_790341(133296479, -), CAediting_790342(133296513, -), CAediting_790343(133296535, -), CAediting_790344(133296550, -), CAediting_790345(133296575, -), CAediting_790346(133296580, -), CAediting_790347(133296602, -), CAediting_790348(133296606, -), CAediting_790349(133296629, -), CAediting_790350(133296637, -), CAediting_790351(133296642, -), CAediting_790352(133296645, -), CAediting_790353(133296646, -), CAediting_790354(133296654, -), CAediting_790355(133296655, -), CAediting_790356(133296656, -), CAediting_790357(133296657, -), CAediting_790358(133296658, -), CAediting_790359(133296660, -), CAediting_790360(133296667, -), CAediting_790361(133296678, -), CAediting_790362(133296700, -), CAediting_790363(133296701, -), CAediting_790364(133296704, -), CAediting_790365(133296736, -), CAediting_790366(133296740, -), CAediting_790367(133296748, -), CAediting_790368(133296749, -), CAediting_790369(133296755, -), CAediting_790370(133296767, -), CAediting_790371(133296771, -), CAediting_790372(133297123, -), CAediting_790373(133297139, -), CAediting_790374(133297143, -), CAediting_790375(133297145, -), CAediting_790376(133297157, -), CAediting_790377(133297172, -), CAediting_790378(133297180, -), CAediting_790379(133297197, -), CAediting_790380(133297208, -), CAediting_790381(133297210, -), CAediting_790382(133297236, -), CAediting_790383(133297239, -), CAediting_790384(133297247, -), CAediting_790385(133297253, -), CAediting_790386(133297254, -), CAediting_790387(133297264, -), CAediting_790388(133297267, -), CAediting_790389(133297286, -), CAediting_790390(133297289, -), CAediting_790391(133297298, -), CAediting_790392(133297311, -), CAediting_790393(133297315, -), CAediting_790394(133297316, -), CAediting_790395(133297322, -), CAediting_790396(133297335, -), CAediting_790397(133297336, -), CAediting_790398(133297341, -), CAediting_790399(133297343, -), CAediting_790400(133297351, -), CAediting_790401(133297365, -), CAediting_790402(133297372, -), CAediting_790403(133297389, -), CAediting_790404(133297390, -), CAediting_790405(133297396, -), CAediting_790406(133300319, -), CAediting_790407(133300331, -), CAediting_790408(133300332, -), CAediting_790409(133300347, -), CAediting_790410(133300358, -), CAediting_790411(133300384, -), CAediting_790412(133300393, -), CAediting_790413(133300428, -), CAediting_790414(133300429, -), CAediting_790415(133300449, -), CAediting_790416(133300453, -), CAediting_790417(133300455, -), CAediting_790418(133300462, -), CAediting_790419(133300465, -), CAediting_790420(133300466, -), CAediting_790421(133300474, -), CAediting_790422(133300479, -), CAediting_790423(133300492, -), CAediting_790424(133300505, -), CAediting_790425(133300512, -), CAediting_790426(133300567, -), CAediting_790427(133300723, -), CAediting_790428(133300753, -), CAediting_790429(133301191, -), CAediting_790430(133301196, -), CAediting_790431(133301222, -), CAediting_790432(133301225, -), CAediting_790433(133301235, -), CAediting_790434(133301265, -), CAediting_790435(133301266, -), CAediting_790436(133301289, -), CAediting_790437(133301293, -), CAediting_790438(133301294, -), CAediting_790439(133301295, -), CAediting_790440(133301298, -), CAediting_790441(133301300, -), CAediting_790442(133301301, -), CAediting_790443(133301302, -), CAediting_790444(133301303, -), CAediting_790445(133301357, -), CAediting_790446(133301397, -), CAediting_790447(133301398, -), CAediting_790448(133301404, -), CAediting_790449(133301748, -), CAediting_790450(133301811, -), CAediting_790451(133301812, -), CAediting_790452(133301821, -), CAediting_790453(133301826, -), CAediting_790454(133301847, -), CAediting_790455(133301853, -), CAediting_790456(133301879, -), CAediting_790457(133301882, -), CAediting_790458(133301883, -), CAediting_790459(133301986, -), CAediting_790460(133301987, -), CAediting_790461(133304248, -),

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RNA editing positional annotations for TUBGCP2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_790396chr10_133297335_-nonsynonymous SNVENST00000543663.4c.A686Gp.N229SD.N
CAediting_790397chr10_133297336_-nonsynonymous SNVENST00000543663.4c.A685Gp.N229DD.N
CAediting_790398chr10_133297341_-nonsynonymous SNVENST00000543663.4c.A680Gp.H227RD.N
CAediting_790403chr10_133297389_-nonsynonymous SNVENST00000543663.4c.A632Gp.N211SD.N
CAediting_790404chr10_133297390_-nonsynonymous SNVENST00000543663.4c.A631Gp.N211DD.N

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_790289chr10_133284531_-intronic
CAediting_790290chr10_133284532_-intronic
CAediting_790291chr10_133284633_-intronic
CAediting_790292chr10_133290250_-UTR5
CAediting_790293chr10_133290260_-UTR5
CAediting_790294chr10_133294622_-intronic
CAediting_790295chr10_133294649_-intronic
CAediting_790296chr10_133294651_-intronic
CAediting_790297chr10_133294676_-intronic
CAediting_790298chr10_133294681_-intronic
CAediting_790299chr10_133294683_-intronic
CAediting_790300chr10_133294688_-intronic
CAediting_790301chr10_133294692_-intronic
CAediting_790302chr10_133294699_-intronic
CAediting_790303chr10_133294700_-intronic
CAediting_790304chr10_133294713_-intronic
CAediting_790305chr10_133294726_-intronic
CAediting_790306chr10_133294731_-intronic
CAediting_790307chr10_133294732_-intronic
CAediting_790308chr10_133294757_-intronic
CAediting_790309chr10_133294764_-intronic
CAediting_790310chr10_133294780_-intronic
CAediting_790311chr10_133294783_-intronic
CAediting_790312chr10_133294786_-intronic
CAediting_790313chr10_133294787_-intronic
CAediting_790314chr10_133294792_-intronic
CAediting_790315chr10_133294793_-intronic
CAediting_790316chr10_133294794_-intronic
CAediting_790317chr10_133294795_-intronic
CAediting_790318chr10_133294798_-intronic
CAediting_790319chr10_133294812_-intronic
CAediting_790320chr10_133295174_-intronic
CAediting_790321chr10_133295190_-ncRNA_exonic
CAediting_790322chr10_133295225_-ncRNA_exonic
CAediting_790323chr10_133295255_-ncRNA_exonic
CAediting_790324chr10_133295277_-ncRNA_exonic
CAediting_790325chr10_133295281_-ncRNA_exonic
CAediting_790326chr10_133295298_-ncRNA_intronic
CAediting_790327chr10_133295315_-ncRNA_intronic
CAediting_790328chr10_133295335_-ncRNA_intronic
CAediting_790329chr10_133295347_-ncRNA_intronic
CAediting_790330chr10_133295365_-ncRNA_exonic
CAediting_790331chr10_133295371_-ncRNA_exonic
CAediting_790332chr10_133295385_-ncRNA_exonic
CAediting_790333chr10_133295390_-ncRNA_exonic
CAediting_790334chr10_133295395_-ncRNA_exonic
CAediting_790335chr10_133295400_-ncRNA_exonic
CAediting_790336chr10_133295401_-ncRNA_exonic
CAediting_790337chr10_133295403_-ncRNA_exonic
CAediting_790338chr10_133295409_-ncRNA_exonic
CAediting_790339chr10_133295433_-ncRNA_exonic
CAediting_790340chr10_133295441_-ncRNA_splicing
CAediting_790341chr10_133296479_-intronic
CAediting_790342chr10_133296513_-intronic
CAediting_790343chr10_133296535_-intronic
CAediting_790344chr10_133296550_-intronic
CAediting_790345chr10_133296575_-intronic
CAediting_790346chr10_133296580_-intronic
CAediting_790347chr10_133296602_-intronic
CAediting_790348chr10_133296606_-intronic
CAediting_790349chr10_133296629_-intronic
CAediting_790350chr10_133296637_-intronic
CAediting_790351chr10_133296642_-intronic
CAediting_790352chr10_133296645_-intronic
CAediting_790353chr10_133296646_-intronic
CAediting_790354chr10_133296654_-intronic
CAediting_790355chr10_133296655_-intronic
CAediting_790356chr10_133296656_-intronic
CAediting_790357chr10_133296657_-intronic
CAediting_790358chr10_133296658_-intronic
CAediting_790359chr10_133296660_-intronic
CAediting_790360chr10_133296667_-intronic
CAediting_790361chr10_133296678_-intronic
CAediting_790362chr10_133296700_-intronic
CAediting_790363chr10_133296701_-intronic
CAediting_790364chr10_133296704_-intronic
CAediting_790365chr10_133296736_-intronic
CAediting_790366chr10_133296740_-intronic
CAediting_790367chr10_133296748_-intronic
CAediting_790368chr10_133296749_-intronic
CAediting_790369chr10_133296755_-intronic
CAediting_790370chr10_133296767_-intronic
CAediting_790371chr10_133296771_-intronic
CAediting_790372chr10_133297123_-intronic
CAediting_790373chr10_133297139_-intronic
CAediting_790374chr10_133297143_-intronic
CAediting_790375chr10_133297145_-intronic
CAediting_790376chr10_133297157_-intronic
CAediting_790377chr10_133297172_-intronic
CAediting_790378chr10_133297180_-intronic
CAediting_790379chr10_133297197_-intronic
CAediting_790380chr10_133297208_-intronic
CAediting_790381chr10_133297210_-intronic
CAediting_790382chr10_133297236_-intronic
CAediting_790383chr10_133297239_-intronic
CAediting_790384chr10_133297247_-intronic
CAediting_790385chr10_133297253_-intronic
CAediting_790386chr10_133297254_-intronic
CAediting_790387chr10_133297264_-intronic
CAediting_790388chr10_133297267_-intronic
CAediting_790389chr10_133297286_-intronic
CAediting_790390chr10_133297289_-intronic
CAediting_790391chr10_133297298_-intronic
CAediting_790392chr10_133297311_-intronic
CAediting_790393chr10_133297315_-intronic
CAediting_790394chr10_133297316_-intronic
CAediting_790395chr10_133297322_-exonic
CAediting_790396chr10_133297335_-exonic
CAediting_790397chr10_133297336_-exonic
CAediting_790398chr10_133297341_-exonic
CAediting_790399chr10_133297343_-exonic
CAediting_790400chr10_133297351_-exonic
CAediting_790401chr10_133297365_-exonic
CAediting_790402chr10_133297372_-exonic
CAediting_790403chr10_133297389_-exonic
CAediting_790404chr10_133297390_-exonic
CAediting_790405chr10_133297396_-exonic
CAediting_790406chr10_133300319_-ncRNA_intronic
CAediting_790407chr10_133300331_-ncRNA_intronic
CAediting_790408chr10_133300332_-ncRNA_intronic
CAediting_790409chr10_133300347_-ncRNA_intronic
CAediting_790410chr10_133300358_-ncRNA_intronic
CAediting_790411chr10_133300384_-ncRNA_intronic
CAediting_790412chr10_133300393_-ncRNA_intronic
CAediting_790413chr10_133300428_-ncRNA_intronic
CAediting_790414chr10_133300429_-ncRNA_intronic
CAediting_790415chr10_133300449_-ncRNA_intronic
CAediting_790416chr10_133300453_-ncRNA_intronic
CAediting_790417chr10_133300455_-ncRNA_intronic
CAediting_790418chr10_133300462_-exonic
CAediting_790419chr10_133300465_-exonic
CAediting_790420chr10_133300466_-exonic
CAediting_790421chr10_133300474_-exonic
CAediting_790422chr10_133300479_-exonic
CAediting_790423chr10_133300492_-exonic
CAediting_790424chr10_133300505_-exonic
CAediting_790425chr10_133300512_-exonic
CAediting_790426chr10_133300567_-ncRNA_intronic
CAediting_790427chr10_133300723_-ncRNA_intronic
CAediting_790428chr10_133300753_-ncRNA_intronic
CAediting_790429chr10_133301191_-ncRNA_intronic
CAediting_790430chr10_133301196_-ncRNA_intronic
CAediting_790431chr10_133301222_-ncRNA_intronic
CAediting_790432chr10_133301225_-ncRNA_intronic
CAediting_790433chr10_133301235_-ncRNA_intronic
CAediting_790434chr10_133301265_-ncRNA_intronic
CAediting_790435chr10_133301266_-ncRNA_intronic
CAediting_790436chr10_133301289_-ncRNA_intronic
CAediting_790437chr10_133301293_-ncRNA_intronic
CAediting_790438chr10_133301294_-ncRNA_intronic
CAediting_790439chr10_133301295_-ncRNA_intronic
CAediting_790440chr10_133301298_-ncRNA_intronic
CAediting_790441chr10_133301300_-ncRNA_intronic
CAediting_790442chr10_133301301_-ncRNA_intronic
CAediting_790443chr10_133301302_-ncRNA_intronic
CAediting_790444chr10_133301303_-ncRNA_intronic
CAediting_790445chr10_133301357_-ncRNA_intronic
CAediting_790446chr10_133301397_-ncRNA_intronic
CAediting_790447chr10_133301398_-ncRNA_intronic
CAediting_790448chr10_133301404_-ncRNA_intronic
CAediting_790449chr10_133301748_-ncRNA_exonic
CAediting_790450chr10_133301811_-ncRNA_exonic
CAediting_790451chr10_133301812_-ncRNA_exonic
CAediting_790452chr10_133301821_-ncRNA_exonic
CAediting_790453chr10_133301826_-ncRNA_exonic
CAediting_790454chr10_133301847_-ncRNA_exonic
CAediting_790455chr10_133301853_-ncRNA_exonic
CAediting_790456chr10_133301879_-ncRNA_exonic
CAediting_790457chr10_133301882_-ncRNA_exonic
CAediting_790458chr10_133301883_-ncRNA_exonic
CAediting_790459chr10_133301986_-ncRNA_exonic
CAediting_790460chr10_133301987_-ncRNA_exonic
CAediting_790461chr10_133304248_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_790289chr10_133284531_-SINEAluAluJo
CAediting_790290chr10_133284532_-SINEAluAluJo
CAediting_790291chr10_133284633_-SINEAluAluJo
CAediting_790292chr10_133290250_-SINEAluAluSc
CAediting_790293chr10_133290260_-SINEAluAluSc
CAediting_790294chr10_133294622_-SINEAluAluJr
CAediting_790295chr10_133294649_-SINEAluAluJr
CAediting_790296chr10_133294651_-SINEAluAluJr
CAediting_790297chr10_133294676_-SINEAluAluJr
CAediting_790298chr10_133294681_-SINEAluAluJr
CAediting_790299chr10_133294683_-SINEAluAluJr
CAediting_790300chr10_133294688_-SINEAluAluJr
CAediting_790301chr10_133294692_-SINEAluAluJr
CAediting_790302chr10_133294699_-SINEAluAluJr
CAediting_790303chr10_133294700_-SINEAluAluJr
CAediting_790304chr10_133294713_-SINEAluAluJr
CAediting_790305chr10_133294726_-SINEAluAluJr
CAediting_790306chr10_133294731_-SINEAluAluJr
CAediting_790307chr10_133294732_-SINEAluAluJr
CAediting_790308chr10_133294757_-SINEAluAluJr
CAediting_790309chr10_133294764_-SINEAluAluJr
CAediting_790310chr10_133294780_-SINEAluAluJr
CAediting_790311chr10_133294783_-SINEAluAluJr
CAediting_790312chr10_133294786_-SINEAluAluJr
CAediting_790313chr10_133294787_-SINEAluAluJr
CAediting_790314chr10_133294792_-SINEAluAluJr
CAediting_790315chr10_133294793_-SINEAluAluJr
CAediting_790316chr10_133294794_-SINEAluAluJr
CAediting_790317chr10_133294795_-SINEAluAluJr
CAediting_790318chr10_133294798_-SINEAluAluJr
CAediting_790319chr10_133294812_-SINEAluAluJr
CAediting_790320chr10_133295174_-SINEAluAluJb
CAediting_790321chr10_133295190_-SINEAluAluJb
CAediting_790322chr10_133295225_-SINEAluAluJb
CAediting_790323chr10_133295255_-SINEAluAluJb
CAediting_790324chr10_133295277_-SINEAluAluJb
CAediting_790325chr10_133295281_-SINEAluAluJb
CAediting_790326chr10_133295298_-SINEAluAluJb
CAediting_790327chr10_133295315_-SINEAluAluJb
CAediting_790328chr10_133295335_-SINEAluAluJb
CAediting_790329chr10_133295347_-SINEAluAluJb
CAediting_790330chr10_133295365_-SINEAluAluJb
CAediting_790331chr10_133295371_-SINEAluAluJb
CAediting_790332chr10_133295385_-SINEAluAluJb
CAediting_790333chr10_133295390_-SINEAluAluJb
CAediting_790334chr10_133295395_-SINEAluAluJb
CAediting_790335chr10_133295400_-SINEAluAluJb
CAediting_790336chr10_133295401_-SINEAluAluJb
CAediting_790337chr10_133295403_-SINEAluAluJb
CAediting_790338chr10_133295409_-SINEAluAluJb
CAediting_790339chr10_133295433_-SINEAluAluJb
CAediting_790340chr10_133295441_-SINEAluAluJb
CAediting_790341chr10_133296479_-SINEAluAluJb
CAediting_790342chr10_133296513_-SINEAluAluJb
CAediting_790343chr10_133296535_-SINEAluAluJb
CAediting_790344chr10_133296550_-SINEAluAluJb
CAediting_790345chr10_133296575_-SINEAluAluJb
CAediting_790346chr10_133296580_-SINEAluAluJb
CAediting_790347chr10_133296602_-SINEAluAluJb
CAediting_790348chr10_133296606_-SINEAluAluJb
CAediting_790349chr10_133296629_-SINEAluAluJb
CAediting_790350chr10_133296637_-SINEAluAluJb
CAediting_790351chr10_133296642_-SINEAluAluJb
CAediting_790352chr10_133296645_-SINEAluAluJb
CAediting_790353chr10_133296646_-SINEAluAluJb
CAediting_790354chr10_133296654_-SINEAluAluJb
CAediting_790355chr10_133296655_-SINEAluAluJb
CAediting_790356chr10_133296656_-SINEAluAluJb
CAediting_790357chr10_133296657_-SINEAluAluJb
CAediting_790358chr10_133296658_-SINEAluAluJb
CAediting_790359chr10_133296660_-SINEAluAluJb
CAediting_790360chr10_133296667_-SINEAluAluJb
CAediting_790361chr10_133296678_-SINEAluAluJb
CAediting_790362chr10_133296700_-SINEAluAluJb
CAediting_790363chr10_133296701_-SINEAluAluJb
CAediting_790364chr10_133296704_-SINEAluAluJb
CAediting_790365chr10_133296736_-SINEAluAluJb
CAediting_790366chr10_133296740_-SINEAluAluJb
CAediting_790367chr10_133296748_-SINEAluAluJb
CAediting_790368chr10_133296749_-SINEAluAluJb
CAediting_790369chr10_133296755_-SINEAluAluJb
CAediting_790370chr10_133296767_-SINEAluAluJb
CAediting_790371chr10_133296771_-SINEAluAluJb
CAediting_790372chr10_133297123_-SINEAluAluSx1
CAediting_790373chr10_133297139_-SINEAluAluSx1
CAediting_790374chr10_133297143_-SINEAluAluSx1
CAediting_790375chr10_133297145_-SINEAluAluSx1
CAediting_790376chr10_133297157_-SINEAluAluSx1
CAediting_790377chr10_133297172_-SINEAluAluSx1
CAediting_790378chr10_133297180_-SINEAluAluSx1
CAediting_790379chr10_133297197_-SINEAluAluSx1
CAediting_790380chr10_133297208_-SINEAluAluSx1
CAediting_790381chr10_133297210_-SINEAluAluSx1
CAediting_790382chr10_133297236_-SINEAluAluSx1
CAediting_790383chr10_133297239_-SINEAluAluSx1
CAediting_790384chr10_133297247_-SINEAluAluSx1
CAediting_790385chr10_133297253_-SINEAluAluSx1
CAediting_790386chr10_133297254_-SINEAluAluSx1
CAediting_790387chr10_133297264_-SINEAluAluSx1
CAediting_790388chr10_133297267_-SINEAluAluSx1
CAediting_790389chr10_133297286_-SINEAluAluSx1
CAediting_790390chr10_133297289_-SINEAluAluSx1
CAediting_790391chr10_133297298_-SINEAluAluSx1
CAediting_790392chr10_133297311_-SINEAluAluSx1
CAediting_790393chr10_133297315_-SINEAluAluSx1
CAediting_790394chr10_133297316_-SINEAluAluSx1
CAediting_790395chr10_133297322_-SINEAluAluSx1
CAediting_790396chr10_133297335_-SINEAluAluSx1
CAediting_790397chr10_133297336_-SINEAluAluSx1
CAediting_790398chr10_133297341_-SINEAluAluSx1
CAediting_790399chr10_133297343_-SINEAluAluSx1
CAediting_790400chr10_133297351_-SINEAluAluSx1
CAediting_790401chr10_133297365_-SINEAluAluSx1
CAediting_790402chr10_133297372_-SINEAluAluSx1
CAediting_790403chr10_133297389_-SINEAluAluSx1
CAediting_790404chr10_133297390_-SINEAluAluSx1
CAediting_790405chr10_133297396_-SINEAluAluSx1
CAediting_790406chr10_133300319_-SINEAluAluJb
CAediting_790407chr10_133300331_-SINEAluAluJb
CAediting_790408chr10_133300332_-SINEAluAluJb
CAediting_790409chr10_133300347_-SINEAluAluJb
CAediting_790410chr10_133300358_-SINEAluAluJb
CAediting_790411chr10_133300384_-SINEAluAluJb
CAediting_790412chr10_133300393_-SINEAluAluJb
CAediting_790413chr10_133300428_-SINEAluAluJb
CAediting_790414chr10_133300429_-SINEAluAluJb
CAediting_790415chr10_133300449_-SINEAluAluJb
CAediting_790416chr10_133300453_-SINEAluAluJb
CAediting_790417chr10_133300455_-SINEAluAluJb
CAediting_790418chr10_133300462_-SINEAluAluJb
CAediting_790419chr10_133300465_-SINEAluAluJb
CAediting_790420chr10_133300466_-SINEAluAluJb
CAediting_790421chr10_133300474_-SINEAluAluJb
CAediting_790422chr10_133300479_-SINEAluAluJb
CAediting_790423chr10_133300492_-SINEAluAluJb
CAediting_790424chr10_133300505_-SINEAluAluJb
CAediting_790425chr10_133300512_-SINEAluAluJb
CAediting_790426chr10_133300567_-SINEAluAluJb
CAediting_790427chr10_133300723_-SINEAluAluJb
CAediting_790428chr10_133300753_-SINEAluAluJb
CAediting_790429chr10_133301191_-SINEAluAluSp
CAediting_790430chr10_133301196_-SINEAluAluSp
CAediting_790431chr10_133301222_-SINEAluAluSp
CAediting_790432chr10_133301225_-SINEAluAluSp
CAediting_790433chr10_133301235_-SINEAluAluSp
CAediting_790434chr10_133301265_-SINEAluAluSp
CAediting_790435chr10_133301266_-SINEAluAluSp
CAediting_790436chr10_133301289_-SINEAluAluSp
CAediting_790437chr10_133301293_-SINEAluAluSp
CAediting_790438chr10_133301294_-SINEAluAluSp
CAediting_790439chr10_133301295_-SINEAluAluSp
CAediting_790440chr10_133301298_-SINEAluAluSp
CAediting_790441chr10_133301300_-SINEAluAluSp
CAediting_790442chr10_133301301_-SINEAluAluSp
CAediting_790443chr10_133301302_-SINEAluAluSp
CAediting_790444chr10_133301303_-SINEAluAluSp
CAediting_790445chr10_133301357_-SINEAluAluSp
CAediting_790446chr10_133301397_-SINEAluAluSp
CAediting_790447chr10_133301398_-SINEAluAluSp
CAediting_790448chr10_133301404_-SINEAluAluSp
CAediting_790449chr10_133301748_-SINEAluAluY
CAediting_790450chr10_133301811_-SINEAluAluY
CAediting_790451chr10_133301812_-SINEAluAluY
CAediting_790452chr10_133301821_-SINEAluAluY
CAediting_790453chr10_133301826_-SINEAluAluY
CAediting_790454chr10_133301847_-SINEAluAluY
CAediting_790455chr10_133301853_-SINEAluAluY
CAediting_790456chr10_133301879_-SINEAluAluY
CAediting_790457chr10_133301882_-SINEAluAluY
CAediting_790458chr10_133301883_-SINEAluAluY
CAediting_790459chr10_133301986_-SINEAluAluY
CAediting_790460chr10_133301987_-SINEAluAluY
CAediting_790461chr10_133304248_-SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for TUBGCP2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_790324chr10_133295277_-133295277:1332952993SS3+0iAATTTCTGTATTTTCAGTAGAGA3.32AATTTCTGTATTTTCAGTAGAGG3.03
IRCAediting_790324chr10_133295277_-133295277:1332952993SS3+0iAATTTCTGTATTTTCAGTAGAGA3.32AATTTCTGTATTTTCAGTAGAGG3.03
ESCAediting_790325chr10_133295281_-133295277:1332952993SS0+2iAATTTCTGTATTTTCAGTAGAGA3.32AATTTCTGTATTTTCAGTGGAGA-4.64
ESCAediting_790325chr10_133295281_-133295280:1332953023SS2+0iGCTAATTTCTGTATTTTCAGTAG3.74GCTAATTTCTGTATTTTCAGTGG5.13
IRCAediting_790325chr10_133295281_-133295277:1332952993SS0+2iAATTTCTGTATTTTCAGTAGAGA3.32AATTTCTGTATTTTCAGTGGAGA-4.64
IRCAediting_790325chr10_133295281_-133295280:1332953023SS2+0iGCTAATTTCTGTATTTTCAGTAG3.74GCTAATTTCTGTATTTTCAGTGG5.13
ESCAediting_790326chr10_133295298_-133295277:1332952993SS0+19iAATTTCTGTATTTTCAGTAGAGA3.32AGTTTCTGTATTTTCAGTAGAGA2.95
ESCAediting_790326chr10_133295298_-133295280:1332953023SS0+16iGCTAATTTCTGTATTTTCAGTAG3.74GCTAGTTTCTGTATTTTCAGTAG2.37
IRCAediting_790326chr10_133295298_-133295277:1332952993SS0+19iAATTTCTGTATTTTCAGTAGAGA3.32AGTTTCTGTATTTTCAGTAGAGA2.95
IRCAediting_790326chr10_133295298_-133295280:1332953023SS0+16iGCTAATTTCTGTATTTTCAGTAG3.74GCTAGTTTCTGTATTTTCAGTAG2.37
IRCAediting_790330chr10_133295365_-133295357:1332953655SS3+0iAGGTGATTC-13.08GGGTGATTC-14.42
ESCAediting_790340chr10_133295441_-133295437:1332954593SS0+2iTCTTTTTTTGCTTGAGACAGGGT2.37TCTTTTTTTGCTTGAGACGGGGT-5.59
IRCAediting_790340chr10_133295441_-133295437:1332954593SS0+2iTCTTTTTTTGCTTGAGACAGGGT2.37TCTTTTTTTGCTTGAGACGGGGT-5.59
MEX_1CAediting_790340chr10_133295441_-133295437:1332954593SS0+2iTCTTTTTTTGCTTGAGACAGGGT2.37TCTTTTTTTGCTTGAGACGGGGT-5.59
ESCAediting_790393chr10_133297315_-133297314:1332973225SS0+5iAGGTTGAAG-7.31AGGTTGAGG-1.37
MEX_2CAediting_790393chr10_133297315_-133297314:1332973225SS0+5iAGGTTGAAG-7.31AGGTTGAGG-1.37
ESCAediting_790394chr10_133297316_-133297314:1332973225SS0+4iAGGTTGAAG-7.31AGGTTGGAG-13.17
MEX_2CAediting_790394chr10_133297316_-133297314:1332973225SS0+4iAGGTTGAAG-7.31AGGTTGGAG-13.17
ESCAediting_790395chr10_133297322_-133297314:1332973225SS3+0iAGGTTGAAG-7.31GGGTTGAAG-9.51
MEX_2CAediting_790395chr10_133297322_-133297314:1332973225SS3+0iAGGTTGAAG-7.31GGGTTGAAG-9.51
ESCAediting_790415chr10_133300449_-133300445:1333004535SS0+2iAGGCAAGTG-15.55AGGCGAGTG-15.01
IRCAediting_790415chr10_133300449_-133300445:1333004535SS0+2iAGGCAAGTG-15.55AGGCGAGTG-15.01
ESCAediting_790416chr10_133300453_-133300445:1333004535SS3+0iAGGCAAGTG-15.55GGGCAAGTG-17.4
IRCAediting_790416chr10_133300453_-133300445:1333004535SS3+0iAGGCAAGTG-15.55GGGCAAGTG-17.4
ESCAediting_790426chr10_133300567_-133300545:1333005673SS0+20iAGTCTTACTCTGTCACCCAGGCT3.88GGTCTTACTCTGTCACCCAGGCT4.1

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000130640.12.TUBGCP2.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000130640.12.TUBGCP2.
boxplot

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TUBGCP2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LAML.CAediting_790357.ENSG00000130640.TUBGCP2.png
Soverview

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Protein coding region RNA A-to-I editings for TUBGCP2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TUBGCP2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_790407chr10_133300331_-ENSG00000130640.12ENST00000487796hsa-miR-3189-3p1333003301333003367mer-m8133300329133300348145.00-22.35
CAediting_790407chr10_133300331_-ENSG00000130640.12ENST00000487796hsa-miR-6813-3p1333003291333003357mer-m8133300328133300348140.00-12.24
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-3261333003301333003367mer-m8133300329133300348140.00-14.81
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-330-5p1333003301333003367mer-m8133300329133300354146.00-22.01
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-43141333003311333003377mer-m8133300330133300347140.00-21.17
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-514a-5p1333003291333003357mer-m8133300328133300351146.00-18.94
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-514a-5p1333003291333003357mer-m8133300328133300351146.00-18.94
CAediting_790408chr10_133300332_-ENSG00000130640.12ENST00000487796hsa-miR-514a-5p1333003291333003357mer-m8133300328133300351146.00-18.94
CAediting_790411chr10_133300384_-ENSG00000130640.12ENST00000487796hsa-miR-3940-3p1333003801333003867mer-m8133300379133300398141.00-22.11
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548ae-3p1333004231333004297mer-m8133300422133300443143.00-9.69
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548ae-3p1333004231333004297mer-m8133300422133300443143.00-9.69
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548ah-3p1333004231333004297mer-m8133300422133300445142.00-10.88
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548aj-3p1333004231333004297mer-m8133300422133300443143.00-7.58
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548aj-3p1333004231333004297mer-m8133300422133300443143.00-7.58
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548am-3p1333004231333004297mer-m8133300422133300445142.00-10.88
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548aq-3p1333004231333004297mer-m8133300422133300444143.00-9.69
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548j-3p1333004231333004297mer-m8133300422133300442141.00-9.69
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548x-3p1333004231333004297mer-m8133300422133300442143.00-7.58
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-548x-3p1333004231333004297mer-m8133300422133300442143.00-7.58
CAediting_790413chr10_133300428_-ENSG00000130640.12ENST00000487796hsa-miR-7844-5p1333004251333004317mer-m8133300424133300445165.00-24.12
CAediting_790406chr10_133300319_-ENSG00000130640.12ENST00000487796hsa-miR-106a-3p1333003171333003226mer133300316133300337141.00-21.13
CAediting_790406chr10_133300319_-ENSG00000130640.12ENST00000487796hsa-miR-509-3-5p1333003151333003206mer133300314133300335142.00-14.09
CAediting_790412chr10_133300393_-ENSG00000130640.12ENST00000487796hsa-miR-196a-1-3p1333003911333003977mer-m8133300390133300408154.00-13.74
CAediting_790412chr10_133300393_-ENSG00000130640.12ENST00000487796hsa-miR-3065-5p1333003931333003997mer-m8133300392133300413159.00-15.33
CAediting_790412chr10_133300393_-ENSG00000130640.12ENST00000487796hsa-miR-3529-3p1333003921333003987mer-m8133300391133300414166.00-17.96
CAediting_790414chr10_133300429_-ENSG00000130640.12ENST00000487796hsa-miR-34a-3p1333004261333004327mer-m8133300425133300446147.00-8.76

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_790409chr10_133300347_-ENSG00000130640.12ENST00000487796hsa-miR-133a-5p1333003451333003517mer-m8133300344133300365149-13.64
CAediting_790409chr10_133300347_-ENSG00000130640.12ENST00000487796hsa-miR-133a-5p1333003451333003517mer-m8133300344133300365149-13.64
CAediting_790411chr10_133300384_-ENSG00000130640.12ENST00000487796hsa-miR-3190-5p1333003831333003897mer-m8133300382133300401141-17.05
CAediting_790411chr10_133300384_-ENSG00000130640.12ENST00000487796hsa-miR-44351333003841333003896mer133300383133300403141-17.12
CAediting_790411chr10_133300384_-ENSG00000130640.12ENST00000487796hsa-miR-44351333003841333003896mer133300383133300403141-17.12
CAediting_790409chr10_133300347_-ENSG00000130640.12ENST00000487796hsa-miR-485-5p1333003421333003487mer-m8133300341133300365146-20.29
CAediting_790409chr10_133300347_-ENSG00000130640.12ENST00000487796hsa-miR-6884-5p1333003421333003487mer-m8133300341133300362147-18.34
CAediting_790410chr10_133300358_-ENSG00000130640.12ENST00000487796hsa-miR-80811333003581333003647mer-m8133300357133300379145-13.61

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000130640.12ENST00000482278hsa-miR-13031332831181332831247mer-m8133283117133283136150-17.15
CAediting_1399425chr20_1392958_-ENSG00000130640.12ENST00000487796hsa-miR-6869-5p1333002151333002228mer-1a133300215133300236140-15.1

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TUBGCP2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TUBGCP2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_790333chr10_133295390_-..0.02644374753141160.267214709416988..
KIRCCAediting_790333chr10_133295390_-0.02170746312768460.244465630366193....
ESCACAediting_790333chr10_133295390_-....0.04278515300170590.254061036807418

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Relation with cancer stages for TUBGCP2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCAclinical_stageCAediting_790303chr10_133294700_-0.0448287903176287-0.422088957467356
ESCAclinical_stageCAediting_790335chr10_133295400_-0.0483794458012499-0.383383011641781
ESCApathologic_stageCAediting_790403chr10_133297389_-0.01437290142369140.340877548860162
OVclinical_stageCAediting_790333chr10_133295390_-0.0306449846976460.297266096310862
STADpathologic_stageCAediting_790303chr10_133294700_-0.0192446526014262-0.254981169747818

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Relation with survival for TUBGCP2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TUBGCP2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TUBGCP2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource