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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RPP40 (CAeditome ID:10799) |
Gene summary for RPP40 |
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Gene information | Gene symbol | RPP40 | Gene ID | 10799 |
Gene name | ribonuclease P/MRP subunit p40 | |
Synonyms | RNASEP1|bA428J1.3 | |
Cytomap | 6p25.1 | |
Type of gene | protein-coding | |
Description | ribonuclease P protein subunit p40RNase P subunit 1RNaseP protein p40ribonuclease P (40 kD)ribonuclease P, 40kD subunitribonuclease P/MRP 40kDa subunitribonuclease P1 | |
Modification date | 20210518 | |
UniProtAcc | O75818 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RPP40 | GO:0004526 | Ribonuclease P protein subunit p40 | 30454648 |
RPP40 | GO:0033204 | Ribonuclease P protein subunit p40 | 30454648 |
RPP40 | GO:0001682 | Ribonuclease P protein subunit p40 | 30454648 |
RPP40 | GO:0030681 | Ribonuclease P protein subunit p40 | 30454648 |
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RNA A-to-I events for RPP40 |
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CAediting_457220(5003917, -), |
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RNA editing positional annotations for RPP40 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_457220 | chr6_5003917_- | nonsynonymous SNV | ENST00000319533.8 | c.A86G | p.H29R | T | P | D |
CAediting_457220 | chr6_5003917_- | nonsynonymous SNV | ENST00000380051.5 | c.A86G | p.H29R | T | P | D |
CAediting_457220 | chr6_5003917_- | nonsynonymous SNV | ENST00000479782.1 | c.A86G | p.H29R | T | P | D |
CAediting_457220 | chr6_5003917_- | nonsynonymous SNV | ENST00000618533.3 | c.A86G | p.H29R | T | P | D |
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CAeditome ID | Position | Variant type |
CAediting_457220 | chr6_5003917_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for RPP40 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPP40 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RPP40 |
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The effects of the RNA editing to the miRNA binding sites for RPP40 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for RPP40 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_457220 | ENST00000319533.8 | chr6_5003917_- | -314.30 | -312.00 | -314.30 |
CAediting_457220 | ENST00000380051.5 | chr6_5003917_- | -436.70 | -435.30 | -436.70 |
CAediting_457220 | ENST00000468105.4 | chr6_5003917_- | -166.50 | -163.30 | -166.50 |
CAediting_457220 | ENST00000479782.1 | chr6_5003917_- | -120.80 | -119.40 | -120.80 |
CAediting_457220 | ENST00000483546.1 | chr6_5003917_- | -221.20 | -218.90 | -221.20 |
CAediting_457220 | ENST00000618533.3 | chr6_5003917_- | -312.40 | -308.80 | -312.40 |
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Relation with ADAR for RPP40 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RPP40 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RPP40 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RPP40 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPP40 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |