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Editing gene: NUP50 (CAeditome ID:10762)

Gene summary for NUP50

Gene summary

Gene information	Gene symbol	NUP50
	Gene ID	10762
	Gene name	nucleoporin 50
	Synonyms	NPAP60\|NPAP60L
	Cytomap	22q13.31
	Type of gene	protein-coding
	Description	nuclear pore complex protein Nup5050 kDa nucleoporinnuclear pore-associated protein 60Lnucleoporin 50kDnucleoporin 50kDanucleoporin Nup50
	Modification date	20210518
	UniProtAcc	Q9UKX7
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
NUP50	GO:0005654	Nuclear pore complex protein Nup50	0000052
NUP50	GO:0031965	Nuclear pore complex protein Nup50	0000052
NUP50	GO:0031965	Nuclear pore complex protein Nup50	12802065

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RNA A-to-I events for NUP50

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000093000.17

RNA A-to-I editing events in Cancer.

CAediting_1493018(45166357, +), CAediting_1493019(45169091, +), CAediting_1493020(45169267, +), CAediting_1493021(45174304, +), CAediting_1493022(45176794, +), CAediting_1493023(45176798, +), CAediting_1493024(45176807, +), CAediting_1493025(45176822, +), CAediting_1493026(45176841, +), CAediting_1493027(45176842, +), CAediting_1493028(45176859, +), CAediting_1493029(45176871, +), CAediting_1493030(45176881, +), CAediting_1493031(45176894, +), CAediting_1493032(45176922, +), CAediting_1493033(45176925, +), CAediting_1493034(45176951, +), CAediting_1493035(45176979, +), CAediting_1493036(45176983, +), CAediting_1493037(45177000, +), CAediting_1493038(45177001, +), CAediting_1493039(45177002, +), CAediting_1493040(45177014, +), CAediting_1493041(45177200, +), CAediting_1493042(45177202, +), CAediting_1493043(45177260, +), CAediting_1493044(45177266, +), CAediting_1493045(45177267, +), CAediting_1493046(45177298, +), CAediting_1493047(45177310, +), CAediting_1493048(45177320, +), CAediting_1493049(45177322, +), CAediting_1493050(45177326, +), CAediting_1493051(45177330, +), CAediting_1493052(45177342, +), CAediting_1493053(45177353, +), CAediting_1493054(45177390, +), CAediting_1493055(45177401, +), CAediting_1493056(45177402, +), CAediting_1493057(45177428, +), CAediting_1493058(45177433, +), CAediting_1493059(45177442, +), CAediting_1493060(45177443, +), CAediting_1493061(45177455, +), CAediting_1493062(45177857, +), CAediting_1493063(45177865, +), CAediting_1493064(45177873, +), CAediting_1493065(45177874, +), CAediting_1493066(45177904, +), CAediting_1493067(45177917, +), CAediting_1493068(45177925, +), CAediting_1493069(45177926, +), CAediting_1493070(45177928, +), CAediting_1493071(45177931, +), CAediting_1493072(45177941, +), CAediting_1493073(45177951, +), CAediting_1493074(45177962, +), CAediting_1493075(45177965, +), CAediting_1493076(45177966, +), CAediting_1493077(45177967, +), CAediting_1493078(45177968, +), CAediting_1493079(45177970, +), CAediting_1493080(45177973, +), CAediting_1493081(45177974, +), CAediting_1493082(45177975, +), CAediting_1493083(45177976, +), CAediting_1493084(45177979, +), CAediting_1493085(45178005, +), CAediting_1493086(45178006, +), CAediting_1493087(45178032, +), CAediting_1493088(45178035, +), CAediting_1493089(45178038, +), CAediting_1493090(45178047, +), CAediting_1493091(45178054, +), CAediting_1493092(45178058, +), CAediting_1493093(45178075, +), CAediting_1493094(45178076, +), CAediting_1493095(45178078, +), CAediting_1493096(45179623, +), CAediting_1493097(45179652, +), CAediting_1493098(45179653, +), CAediting_1493099(45179665, +), CAediting_1493100(45179670, +), CAediting_1493101(45179735, +), CAediting_1493102(45179736, +), CAediting_1493103(45179739, +), CAediting_1493104(45179743, +), CAediting_1493105(45179765, +), CAediting_1493106(45179780, +), CAediting_1493107(45179826, +), CAediting_1493108(45179829, +), CAediting_1493109(45179841, +), CAediting_1493110(45180396, +), CAediting_1493111(45180421, +), CAediting_1493112(45180443, +), CAediting_1493113(45180491, +), CAediting_1493114(45180503, +), CAediting_1493115(45180515, +), CAediting_1493116(45180519, +), CAediting_1493117(45180539, +), CAediting_1493118(45180613, +), CAediting_1493119(45182255, +), CAediting_1493120(45182424, +),

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RNA editing positional annotations for NUP50 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1493018	chr22_45166357_+	ncRNA_exonic
CAediting_1493019	chr22_45169091_+	ncRNA_intronic
CAediting_1493020	chr22_45169267_+	ncRNA_intronic
CAediting_1493021	chr22_45174304_+	ncRNA_intronic
CAediting_1493022	chr22_45176794_+	ncRNA_intronic
CAediting_1493023	chr22_45176798_+	ncRNA_intronic
CAediting_1493024	chr22_45176807_+	ncRNA_intronic
CAediting_1493025	chr22_45176822_+	ncRNA_intronic
CAediting_1493026	chr22_45176841_+	ncRNA_intronic
CAediting_1493027	chr22_45176842_+	ncRNA_intronic
CAediting_1493028	chr22_45176859_+	ncRNA_intronic
CAediting_1493029	chr22_45176871_+	ncRNA_intronic
CAediting_1493030	chr22_45176881_+	ncRNA_intronic
CAediting_1493031	chr22_45176894_+	ncRNA_intronic
CAediting_1493032	chr22_45176922_+	ncRNA_intronic
CAediting_1493033	chr22_45176925_+	ncRNA_intronic
CAediting_1493034	chr22_45176951_+	ncRNA_intronic
CAediting_1493035	chr22_45176979_+	ncRNA_intronic
CAediting_1493036	chr22_45176983_+	ncRNA_intronic
CAediting_1493037	chr22_45177000_+	ncRNA_intronic
CAediting_1493038	chr22_45177001_+	ncRNA_intronic
CAediting_1493039	chr22_45177002_+	ncRNA_intronic
CAediting_1493040	chr22_45177014_+	ncRNA_intronic
CAediting_1493041	chr22_45177200_+	ncRNA_intronic
CAediting_1493042	chr22_45177202_+	ncRNA_intronic
CAediting_1493043	chr22_45177260_+	ncRNA_intronic
CAediting_1493044	chr22_45177266_+	ncRNA_intronic
CAediting_1493045	chr22_45177267_+	ncRNA_intronic
CAediting_1493046	chr22_45177298_+	ncRNA_intronic
CAediting_1493047	chr22_45177310_+	ncRNA_intronic
CAediting_1493048	chr22_45177320_+	ncRNA_intronic
CAediting_1493049	chr22_45177322_+	ncRNA_intronic
CAediting_1493050	chr22_45177326_+	ncRNA_intronic
CAediting_1493051	chr22_45177330_+	ncRNA_intronic
CAediting_1493052	chr22_45177342_+	ncRNA_intronic
CAediting_1493053	chr22_45177353_+	ncRNA_intronic
CAediting_1493054	chr22_45177390_+	ncRNA_intronic
CAediting_1493055	chr22_45177401_+	ncRNA_intronic
CAediting_1493056	chr22_45177402_+	ncRNA_intronic
CAediting_1493057	chr22_45177428_+	ncRNA_intronic
CAediting_1493058	chr22_45177433_+	ncRNA_intronic
CAediting_1493059	chr22_45177442_+	ncRNA_intronic
CAediting_1493060	chr22_45177443_+	ncRNA_intronic
CAediting_1493061	chr22_45177455_+	ncRNA_intronic
CAediting_1493062	chr22_45177857_+	ncRNA_exonic
CAediting_1493063	chr22_45177865_+	ncRNA_exonic
CAediting_1493064	chr22_45177873_+	ncRNA_exonic
CAediting_1493065	chr22_45177874_+	ncRNA_exonic
CAediting_1493066	chr22_45177904_+	ncRNA_exonic
CAediting_1493067	chr22_45177917_+	ncRNA_exonic
CAediting_1493068	chr22_45177925_+	ncRNA_exonic
CAediting_1493069	chr22_45177926_+	ncRNA_exonic
CAediting_1493070	chr22_45177928_+	ncRNA_exonic
CAediting_1493071	chr22_45177931_+	ncRNA_exonic
CAediting_1493072	chr22_45177941_+	ncRNA_exonic
CAediting_1493073	chr22_45177951_+	ncRNA_exonic
CAediting_1493074	chr22_45177962_+	ncRNA_exonic
CAediting_1493075	chr22_45177965_+	ncRNA_exonic
CAediting_1493076	chr22_45177966_+	ncRNA_exonic
CAediting_1493077	chr22_45177967_+	ncRNA_exonic
CAediting_1493078	chr22_45177968_+	ncRNA_exonic
CAediting_1493079	chr22_45177970_+	ncRNA_exonic
CAediting_1493080	chr22_45177973_+	ncRNA_exonic
CAediting_1493081	chr22_45177974_+	ncRNA_exonic
CAediting_1493082	chr22_45177975_+	ncRNA_exonic
CAediting_1493083	chr22_45177976_+	ncRNA_exonic
CAediting_1493084	chr22_45177979_+	ncRNA_exonic
CAediting_1493085	chr22_45178005_+	ncRNA_exonic
CAediting_1493086	chr22_45178006_+	ncRNA_exonic
CAediting_1493087	chr22_45178032_+	ncRNA_exonic
CAediting_1493088	chr22_45178035_+	ncRNA_exonic
CAediting_1493089	chr22_45178038_+	ncRNA_exonic
CAediting_1493090	chr22_45178047_+	ncRNA_exonic
CAediting_1493091	chr22_45178054_+	ncRNA_exonic
CAediting_1493092	chr22_45178058_+	ncRNA_exonic
CAediting_1493093	chr22_45178075_+	ncRNA_exonic
CAediting_1493094	chr22_45178076_+	ncRNA_exonic
CAediting_1493095	chr22_45178078_+	ncRNA_exonic
CAediting_1493096	chr22_45179623_+	ncRNA_intronic
CAediting_1493097	chr22_45179652_+	ncRNA_intronic
CAediting_1493098	chr22_45179653_+	ncRNA_intronic
CAediting_1493099	chr22_45179665_+	ncRNA_intronic
CAediting_1493100	chr22_45179670_+	ncRNA_intronic
CAediting_1493101	chr22_45179735_+	ncRNA_intronic
CAediting_1493102	chr22_45179736_+	ncRNA_intronic
CAediting_1493103	chr22_45179739_+	ncRNA_intronic
CAediting_1493104	chr22_45179743_+	ncRNA_intronic
CAediting_1493105	chr22_45179765_+	ncRNA_intronic
CAediting_1493106	chr22_45179780_+	ncRNA_intronic
CAediting_1493107	chr22_45179826_+	ncRNA_intronic
CAediting_1493108	chr22_45179829_+	ncRNA_intronic
CAediting_1493109	chr22_45179841_+	ncRNA_intronic
CAediting_1493110	chr22_45180396_+	ncRNA_intronic
CAediting_1493111	chr22_45180421_+	ncRNA_intronic
CAediting_1493112	chr22_45180443_+	ncRNA_intronic
CAediting_1493113	chr22_45180491_+	ncRNA_intronic
CAediting_1493114	chr22_45180503_+	ncRNA_intronic
CAediting_1493115	chr22_45180515_+	ncRNA_intronic
CAediting_1493116	chr22_45180519_+	ncRNA_intronic
CAediting_1493117	chr22_45180539_+	ncRNA_intronic
CAediting_1493118	chr22_45180613_+	ncRNA_intronic
CAediting_1493119	chr22_45182255_+	ncRNA_intronic
CAediting_1493120	chr22_45182424_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1493018	chr22_45166357_+	SINE	Alu	AluSz
CAediting_1493019	chr22_45169091_+	SINE	Alu	AluSz
CAediting_1493020	chr22_45169267_+	SINE	Alu	AluJo
CAediting_1493021	chr22_45174304_+	SINE	Alu	AluJb
CAediting_1493022	chr22_45176794_+	SINE	Alu	AluSc
CAediting_1493023	chr22_45176798_+	SINE	Alu	AluSc
CAediting_1493024	chr22_45176807_+	SINE	Alu	AluSc
CAediting_1493025	chr22_45176822_+	SINE	Alu	AluSc
CAediting_1493026	chr22_45176841_+	SINE	Alu	AluSc
CAediting_1493027	chr22_45176842_+	SINE	Alu	AluSc
CAediting_1493028	chr22_45176859_+	SINE	Alu	AluSc
CAediting_1493029	chr22_45176871_+	SINE	Alu	AluSc
CAediting_1493030	chr22_45176881_+	SINE	Alu	AluSc
CAediting_1493031	chr22_45176894_+	SINE	Alu	AluSc
CAediting_1493032	chr22_45176922_+	SINE	Alu	AluSc
CAediting_1493033	chr22_45176925_+	SINE	Alu	AluSc
CAediting_1493034	chr22_45176951_+	SINE	Alu	AluSc
CAediting_1493035	chr22_45176979_+	SINE	Alu	AluSc
CAediting_1493036	chr22_45176983_+	SINE	Alu	AluSc
CAediting_1493037	chr22_45177000_+	SINE	Alu	AluSc
CAediting_1493038	chr22_45177001_+	SINE	Alu	AluSc
CAediting_1493039	chr22_45177002_+	SINE	Alu	AluSc
CAediting_1493040	chr22_45177014_+	SINE	Alu	AluSc
CAediting_1493041	chr22_45177200_+	SINE	Alu	AluJb
CAediting_1493042	chr22_45177202_+	SINE	Alu	AluJb
CAediting_1493043	chr22_45177260_+	SINE	Alu	AluJb
CAediting_1493044	chr22_45177266_+	SINE	Alu	AluJb
CAediting_1493045	chr22_45177267_+	SINE	Alu	AluJb
CAediting_1493046	chr22_45177298_+	SINE	Alu	AluJb
CAediting_1493047	chr22_45177310_+	SINE	Alu	AluJb
CAediting_1493048	chr22_45177320_+	SINE	Alu	AluJb
CAediting_1493049	chr22_45177322_+	SINE	Alu	AluJb
CAediting_1493050	chr22_45177326_+	SINE	Alu	AluJb
CAediting_1493051	chr22_45177330_+	SINE	Alu	AluJb
CAediting_1493052	chr22_45177342_+	SINE	Alu	AluJb
CAediting_1493053	chr22_45177353_+	SINE	Alu	AluJb
CAediting_1493054	chr22_45177390_+	SINE	Alu	AluJb
CAediting_1493055	chr22_45177401_+	SINE	Alu	AluJb
CAediting_1493056	chr22_45177402_+	SINE	Alu	AluJb
CAediting_1493057	chr22_45177428_+	SINE	Alu	AluJb
CAediting_1493058	chr22_45177433_+	SINE	Alu	AluJb
CAediting_1493059	chr22_45177442_+	SINE	Alu	AluJb
CAediting_1493060	chr22_45177443_+	SINE	Alu	AluJb
CAediting_1493061	chr22_45177455_+	SINE	Alu	AluJb
CAediting_1493062	chr22_45177857_+	SINE	Alu	AluSx1
CAediting_1493063	chr22_45177865_+	SINE	Alu	AluSx1
CAediting_1493064	chr22_45177873_+	SINE	Alu	AluSx1
CAediting_1493065	chr22_45177874_+	SINE	Alu	AluSx1
CAediting_1493066	chr22_45177904_+	SINE	Alu	AluSx1
CAediting_1493067	chr22_45177917_+	SINE	Alu	AluSx1
CAediting_1493068	chr22_45177925_+	SINE	Alu	AluSx1
CAediting_1493069	chr22_45177926_+	SINE	Alu	AluSx1
CAediting_1493070	chr22_45177928_+	SINE	Alu	AluSx1
CAediting_1493071	chr22_45177931_+	SINE	Alu	AluSx1
CAediting_1493072	chr22_45177941_+	SINE	Alu	AluSx1
CAediting_1493073	chr22_45177951_+	SINE	Alu	AluSx1
CAediting_1493074	chr22_45177962_+	SINE	Alu	AluSx1
CAediting_1493075	chr22_45177965_+	SINE	Alu	AluSx1
CAediting_1493076	chr22_45177966_+	SINE	Alu	AluSx1
CAediting_1493077	chr22_45177967_+	SINE	Alu	AluSx1
CAediting_1493078	chr22_45177968_+	SINE	Alu	AluSx1
CAediting_1493079	chr22_45177970_+	SINE	Alu	AluSx1
CAediting_1493080	chr22_45177973_+	SINE	Alu	AluSx1
CAediting_1493081	chr22_45177974_+	SINE	Alu	AluSx1
CAediting_1493082	chr22_45177975_+	SINE	Alu	AluSx1
CAediting_1493083	chr22_45177976_+	SINE	Alu	AluSx1
CAediting_1493084	chr22_45177979_+	SINE	Alu	AluSx1
CAediting_1493085	chr22_45178005_+	SINE	Alu	AluSx1
CAediting_1493086	chr22_45178006_+	SINE	Alu	AluSx1
CAediting_1493087	chr22_45178032_+	SINE	Alu	AluSx1
CAediting_1493088	chr22_45178035_+	SINE	Alu	AluSx1
CAediting_1493089	chr22_45178038_+	SINE	Alu	AluSx1
CAediting_1493090	chr22_45178047_+	SINE	Alu	AluSx1
CAediting_1493091	chr22_45178054_+	SINE	Alu	AluSx1
CAediting_1493092	chr22_45178058_+	SINE	Alu	AluSx1
CAediting_1493093	chr22_45178075_+	SINE	Alu	AluSx1
CAediting_1493094	chr22_45178076_+	SINE	Alu	AluSx1
CAediting_1493095	chr22_45178078_+	SINE	Alu	AluSx1
CAediting_1493096	chr22_45179623_+	SINE	Alu	AluJr
CAediting_1493097	chr22_45179652_+	SINE	Alu	AluJr
CAediting_1493098	chr22_45179653_+	SINE	Alu	AluJr
CAediting_1493099	chr22_45179665_+	SINE	Alu	AluJr
CAediting_1493100	chr22_45179670_+	SINE	Alu	AluJr
CAediting_1493101	chr22_45179735_+	SINE	Alu	AluJr
CAediting_1493102	chr22_45179736_+	SINE	Alu	AluJr
CAediting_1493103	chr22_45179739_+	SINE	Alu	AluJr
CAediting_1493104	chr22_45179743_+	SINE	Alu	AluJr
CAediting_1493105	chr22_45179765_+	SINE	Alu	AluJr
CAediting_1493106	chr22_45179780_+	SINE	Alu	AluJr
CAediting_1493107	chr22_45179826_+	SINE	Alu	AluJr
CAediting_1493108	chr22_45179829_+	SINE	Alu	AluJr
CAediting_1493109	chr22_45179841_+	SINE	Alu	AluJr
CAediting_1493110	chr22_45180396_+	SINE	Alu	AluJo
CAediting_1493111	chr22_45180421_+	SINE	Alu	AluJo
CAediting_1493112	chr22_45180443_+	SINE	Alu	AluJo
CAediting_1493113	chr22_45180491_+	SINE	Alu	AluJo
CAediting_1493114	chr22_45180503_+	SINE	Alu	AluJo
CAediting_1493115	chr22_45180515_+	SINE	Alu	AluJo
CAediting_1493116	chr22_45180519_+	SINE	Alu	AluJo
CAediting_1493117	chr22_45180539_+	SINE	Alu	AluJo
CAediting_1493118	chr22_45180613_+	SINE	Alu	AluJo
CAediting_1493119	chr22_45182255_+	SINE	Alu	AluSx
CAediting_1493120	chr22_45182424_+	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for NUP50

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000093000.17.NUP50.

Correlation between RNA A-to-I editing and PSI for ENSG00000093000.17.NUP50.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NUP50

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NUP50

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NUP50

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_604450	chr7_133034877_-	ENSG00000093000.17	ENST00000434760	hsa-miR-3654	45171099	45171106	8mer-1a	45171086	45171106	153	-20.22
CAediting_604450	chr7_133034877_-	ENSG00000093000.17	ENST00000419387	hsa-miR-3654	45171099	45171106	8mer-1a	45171086	45171106	153	-20.22
CAediting_1160181	chr17_7017644_-	ENSG00000093000.17	ENST00000419387	hsa-miR-195-3p	45178482	45178489	8mer-1a	45178466	45178489	155	-14.65
CAediting_1399425	chr20_1392958_-	ENSG00000093000.17	ENST00000419387	hsa-miR-6869-5p	45178816	45178822	7mer-m8	45178802	45178823	148	-17.99
CAediting_468389	chr6_31355314_-	ENSG00000093000.17	ENST00000419387	hsa-miR-6891-5p	45178315	45178321	7mer-m8	45178306	45178325	153	-25.42
CAediting_468389	chr6_31355314_-	ENSG00000093000.17	ENST00000419387	hsa-miR-6891-5p	45178318	45178324	7mer-m8	45178306	45178325	153	-25.42

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NUP50

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for NUP50

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for NUP50

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for NUP50

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for NUP50

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for NUP50

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene