Home

Download

Statistics

Examples

Help

Contact

Editing gene: CTSC (CAeditome ID:1075)

Gene summary for CTSC

Gene summary

Gene information	Gene symbol	CTSC
	Gene ID	1075
	Gene name	cathepsin C
	Synonyms	CPPI\|DPP-I\|DPP1\|DPPI\|HMS\|JP\|JPD\|PALS\|PDON1\|PLS
	Cytomap	11q14.2
	Type of gene	protein-coding
	Description	dipeptidyl peptidase 1cathepsin Jdipeptidyl transferasedipeptidyl-peptidase I
	Modification date	20210518
	UniProtAcc	P53634
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CTSC	GO:0008234	Dipeptidyl peptidase 1	8811434
CTSC	GO:0006508	Dipeptidyl peptidase 1	8811434
CTSC	GO:0005654	Dipeptidyl peptidase 1	0000052
CTSC	GO:0005813	Dipeptidyl peptidase 1	0000052
CTSC	GO:0043231	Dipeptidyl peptidase 1	0000052

Top

RNA A-to-I events for CTSC

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000109861.14

RNA A-to-I editing events in Cancer.

CAediting_846234(88295501, -), CAediting_846235(88295518, -), CAediting_846236(88322365, -), CAediting_846237(88322366, -), CAediting_846238(88322369, -), CAediting_846239(88322372, -), CAediting_846240(88322373, -), CAediting_846241(88322379, -), CAediting_846242(88322380, -), CAediting_846243(88322382, -), CAediting_846244(88322386, -), CAediting_846245(88322387, -), CAediting_846246(88322388, -), CAediting_846247(88322392, -), CAediting_846248(88322394, -), CAediting_846249(88322396, -), CAediting_846250(88322403, -), CAediting_846251(88322410, -), CAediting_846252(88322414, -), CAediting_846253(88322415, -), CAediting_846254(88322416, -), CAediting_846255(88322417, -), CAediting_846256(88322420, -), CAediting_846257(88322422, -), CAediting_846258(88322424, -), CAediting_846259(88322429, -), CAediting_846260(88322445, -), CAediting_846261(88322446, -), CAediting_846262(88322451, -), CAediting_846263(88322453, -), CAediting_846264(88322454, -), CAediting_846265(88322456, -), CAediting_846266(88322460, -), CAediting_846267(88322466, -), CAediting_846268(88322486, -), CAediting_846269(88322487, -), CAediting_846270(88322490, -), CAediting_846271(88322491, -), CAediting_846272(88322495, -), CAediting_846273(88322505, -), CAediting_846274(88322506, -), CAediting_846275(88322511, -), CAediting_846276(88322513, -), CAediting_846277(88322517, -), CAediting_846278(88322518, -), CAediting_846279(88322520, -), CAediting_846280(88322521, -), CAediting_846281(88322522, -), CAediting_846282(88322523, -), CAediting_846283(88322524, -), CAediting_846284(88322526, -), CAediting_846285(88322531, -), CAediting_846286(88322532, -), CAediting_846287(88322533, -), CAediting_846288(88322535, -), CAediting_846289(88324160, -), CAediting_846290(88324167, -), CAediting_846291(88324168, -), CAediting_846292(88324169, -), CAediting_846293(88324172, -), CAediting_846294(88324176, -), CAediting_846295(88324182, -), CAediting_846296(88324212, -), CAediting_846297(88324213, -), CAediting_846298(88324219, -), CAediting_846299(88324227, -), CAediting_846300(88324228, -), CAediting_846301(88324229, -), CAediting_846302(88324232, -), CAediting_846303(88324238, -), CAediting_846304(88324248, -), CAediting_846305(88324249, -), CAediting_846306(88324259, -), CAediting_846307(88324263, -), CAediting_846308(88324264, -), CAediting_846309(88324271, -), CAediting_846310(88324272, -), CAediting_846311(88324278, -), CAediting_846312(88324293, -), CAediting_846313(88324303, -), CAediting_846314(88324313, -), CAediting_846315(88324331, -), CAediting_846316(88328736, -), CAediting_846317(88328737, -), CAediting_846318(88328739, -), CAediting_846319(88328792, -), CAediting_846320(88328795, -), CAediting_846321(88328796, -), CAediting_846322(88328797, -), CAediting_846323(88328798, -), CAediting_846324(88328801, -), CAediting_846325(88328804, -), CAediting_846326(88328805, -), CAediting_846327(88328806, -), CAediting_846328(88328807, -), CAediting_846329(88328828, -), CAediting_846330(88328830, -), CAediting_846331(88328848, -), CAediting_846332(88328849, -), CAediting_846333(88329225, -), CAediting_846334(88329265, -), CAediting_846335(88329293, -), CAediting_846336(88329316, -), CAediting_846337(88329334, -), CAediting_846338(88329338, -), CAediting_846339(88329344, -), CAediting_846340(88329358, -), CAediting_846341(88329360, -), CAediting_846342(88329368, -), CAediting_846343(88329370, -), CAediting_846344(88329382, -), CAediting_846345(88329397, -), CAediting_846346(88329453, -), CAediting_846347(88329454, -), CAediting_846348(88329865, -), CAediting_846349(88329887, -), CAediting_846350(88329894, -), CAediting_846351(88329895, -), CAediting_846352(88329896, -), CAediting_846353(88329987, -), CAediting_846354(88330434, -), CAediting_846355(88330441, -), CAediting_846356(88330460, -), CAediting_846357(88330487, -), CAediting_846358(88330513, -), CAediting_846359(88330516, -), CAediting_846360(88330517, -), CAediting_846361(88330522, -), CAediting_846362(88330525, -), CAediting_846363(88330526, -), CAediting_846364(88330527, -), CAediting_846365(88330528, -), CAediting_846366(88330531, -), CAediting_846367(88330562, -), CAediting_846368(88330576, -), CAediting_846369(88330581, -), CAediting_846370(88330596, -), CAediting_846371(88330621, -), CAediting_846372(88330643, -),

Top

RNA editing positional annotations for CTSC using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_846234	chr11_88295501_-	ncRNA_intronic
CAediting_846235	chr11_88295518_-	ncRNA_intronic
CAediting_846236	chr11_88322365_-	ncRNA_intronic
CAediting_846237	chr11_88322366_-	ncRNA_intronic
CAediting_846238	chr11_88322369_-	ncRNA_intronic
CAediting_846239	chr11_88322372_-	ncRNA_intronic
CAediting_846240	chr11_88322373_-	ncRNA_intronic
CAediting_846241	chr11_88322379_-	ncRNA_intronic
CAediting_846242	chr11_88322380_-	ncRNA_intronic
CAediting_846243	chr11_88322382_-	ncRNA_intronic
CAediting_846244	chr11_88322386_-	ncRNA_intronic
CAediting_846245	chr11_88322387_-	ncRNA_intronic
CAediting_846246	chr11_88322388_-	ncRNA_intronic
CAediting_846247	chr11_88322392_-	ncRNA_intronic
CAediting_846248	chr11_88322394_-	ncRNA_intronic
CAediting_846249	chr11_88322396_-	ncRNA_intronic
CAediting_846250	chr11_88322403_-	ncRNA_intronic
CAediting_846251	chr11_88322410_-	ncRNA_intronic
CAediting_846252	chr11_88322414_-	ncRNA_intronic
CAediting_846253	chr11_88322415_-	ncRNA_intronic
CAediting_846254	chr11_88322416_-	ncRNA_intronic
CAediting_846255	chr11_88322417_-	ncRNA_intronic
CAediting_846256	chr11_88322420_-	ncRNA_intronic
CAediting_846257	chr11_88322422_-	ncRNA_intronic
CAediting_846258	chr11_88322424_-	ncRNA_intronic
CAediting_846259	chr11_88322429_-	ncRNA_intronic
CAediting_846260	chr11_88322445_-	ncRNA_intronic
CAediting_846261	chr11_88322446_-	ncRNA_intronic
CAediting_846262	chr11_88322451_-	ncRNA_intronic
CAediting_846263	chr11_88322453_-	ncRNA_intronic
CAediting_846264	chr11_88322454_-	ncRNA_intronic
CAediting_846265	chr11_88322456_-	ncRNA_intronic
CAediting_846266	chr11_88322460_-	ncRNA_intronic
CAediting_846267	chr11_88322466_-	ncRNA_intronic
CAediting_846268	chr11_88322486_-	ncRNA_intronic
CAediting_846269	chr11_88322487_-	ncRNA_intronic
CAediting_846270	chr11_88322490_-	ncRNA_intronic
CAediting_846271	chr11_88322491_-	ncRNA_intronic
CAediting_846272	chr11_88322495_-	ncRNA_intronic
CAediting_846273	chr11_88322505_-	ncRNA_intronic
CAediting_846274	chr11_88322506_-	ncRNA_intronic
CAediting_846275	chr11_88322511_-	ncRNA_intronic
CAediting_846276	chr11_88322513_-	ncRNA_intronic
CAediting_846277	chr11_88322517_-	ncRNA_intronic
CAediting_846278	chr11_88322518_-	ncRNA_intronic
CAediting_846279	chr11_88322520_-	ncRNA_intronic
CAediting_846280	chr11_88322521_-	ncRNA_intronic
CAediting_846281	chr11_88322522_-	ncRNA_intronic
CAediting_846282	chr11_88322523_-	ncRNA_intronic
CAediting_846283	chr11_88322524_-	ncRNA_intronic
CAediting_846284	chr11_88322526_-	ncRNA_intronic
CAediting_846285	chr11_88322531_-	ncRNA_intronic
CAediting_846286	chr11_88322532_-	ncRNA_intronic
CAediting_846287	chr11_88322533_-	ncRNA_intronic
CAediting_846288	chr11_88322535_-	ncRNA_intronic
CAediting_846289	chr11_88324160_-	ncRNA_intronic
CAediting_846290	chr11_88324167_-	ncRNA_intronic
CAediting_846291	chr11_88324168_-	ncRNA_intronic
CAediting_846292	chr11_88324169_-	ncRNA_intronic
CAediting_846293	chr11_88324172_-	ncRNA_intronic
CAediting_846294	chr11_88324176_-	ncRNA_intronic
CAediting_846295	chr11_88324182_-	ncRNA_intronic
CAediting_846296	chr11_88324212_-	ncRNA_intronic
CAediting_846297	chr11_88324213_-	ncRNA_intronic
CAediting_846298	chr11_88324219_-	ncRNA_intronic
CAediting_846299	chr11_88324227_-	ncRNA_intronic
CAediting_846300	chr11_88324228_-	ncRNA_intronic
CAediting_846301	chr11_88324229_-	ncRNA_intronic
CAediting_846302	chr11_88324232_-	ncRNA_intronic
CAediting_846303	chr11_88324238_-	ncRNA_intronic
CAediting_846304	chr11_88324248_-	ncRNA_intronic
CAediting_846305	chr11_88324249_-	ncRNA_intronic
CAediting_846306	chr11_88324259_-	ncRNA_intronic
CAediting_846307	chr11_88324263_-	ncRNA_intronic
CAediting_846308	chr11_88324264_-	ncRNA_intronic
CAediting_846309	chr11_88324271_-	ncRNA_intronic
CAediting_846310	chr11_88324272_-	ncRNA_intronic
CAediting_846311	chr11_88324278_-	ncRNA_intronic
CAediting_846312	chr11_88324293_-	ncRNA_intronic
CAediting_846313	chr11_88324303_-	ncRNA_intronic
CAediting_846314	chr11_88324313_-	ncRNA_intronic
CAediting_846315	chr11_88324331_-	ncRNA_intronic
CAediting_846316	chr11_88328736_-	ncRNA_intronic
CAediting_846317	chr11_88328737_-	ncRNA_intronic
CAediting_846318	chr11_88328739_-	ncRNA_intronic
CAediting_846319	chr11_88328792_-	ncRNA_intronic
CAediting_846320	chr11_88328795_-	ncRNA_intronic
CAediting_846321	chr11_88328796_-	ncRNA_intronic
CAediting_846322	chr11_88328797_-	ncRNA_intronic
CAediting_846323	chr11_88328798_-	ncRNA_intronic
CAediting_846324	chr11_88328801_-	ncRNA_intronic
CAediting_846325	chr11_88328804_-	ncRNA_intronic
CAediting_846326	chr11_88328805_-	ncRNA_intronic
CAediting_846327	chr11_88328806_-	ncRNA_intronic
CAediting_846328	chr11_88328807_-	ncRNA_intronic
CAediting_846329	chr11_88328828_-	ncRNA_intronic
CAediting_846330	chr11_88328830_-	ncRNA_intronic
CAediting_846331	chr11_88328848_-	ncRNA_intronic
CAediting_846332	chr11_88328849_-	ncRNA_intronic
CAediting_846333	chr11_88329225_-	ncRNA_intronic
CAediting_846334	chr11_88329265_-	ncRNA_intronic
CAediting_846335	chr11_88329293_-	ncRNA_intronic
CAediting_846336	chr11_88329316_-	ncRNA_intronic
CAediting_846337	chr11_88329334_-	ncRNA_intronic
CAediting_846338	chr11_88329338_-	ncRNA_intronic
CAediting_846339	chr11_88329344_-	ncRNA_intronic
CAediting_846340	chr11_88329358_-	ncRNA_intronic
CAediting_846341	chr11_88329360_-	ncRNA_intronic
CAediting_846342	chr11_88329368_-	ncRNA_intronic
CAediting_846343	chr11_88329370_-	ncRNA_intronic
CAediting_846344	chr11_88329382_-	ncRNA_intronic
CAediting_846345	chr11_88329397_-	ncRNA_intronic
CAediting_846346	chr11_88329453_-	ncRNA_intronic
CAediting_846347	chr11_88329454_-	ncRNA_intronic
CAediting_846348	chr11_88329865_-	ncRNA_intronic
CAediting_846349	chr11_88329887_-	ncRNA_intronic
CAediting_846350	chr11_88329894_-	ncRNA_intronic
CAediting_846351	chr11_88329895_-	ncRNA_intronic
CAediting_846352	chr11_88329896_-	ncRNA_intronic
CAediting_846353	chr11_88329987_-	ncRNA_intronic
CAediting_846354	chr11_88330434_-	ncRNA_intronic
CAediting_846355	chr11_88330441_-	ncRNA_intronic
CAediting_846356	chr11_88330460_-	ncRNA_intronic
CAediting_846357	chr11_88330487_-	ncRNA_intronic
CAediting_846358	chr11_88330513_-	ncRNA_intronic
CAediting_846359	chr11_88330516_-	ncRNA_intronic
CAediting_846360	chr11_88330517_-	ncRNA_intronic
CAediting_846361	chr11_88330522_-	ncRNA_intronic
CAediting_846362	chr11_88330525_-	ncRNA_intronic
CAediting_846363	chr11_88330526_-	ncRNA_intronic
CAediting_846364	chr11_88330527_-	ncRNA_intronic
CAediting_846365	chr11_88330528_-	ncRNA_intronic
CAediting_846366	chr11_88330531_-	ncRNA_intronic
CAediting_846367	chr11_88330562_-	ncRNA_intronic
CAediting_846368	chr11_88330576_-	ncRNA_intronic
CAediting_846369	chr11_88330581_-	ncRNA_intronic
CAediting_846370	chr11_88330596_-	ncRNA_intronic
CAediting_846371	chr11_88330621_-	ncRNA_intronic
CAediting_846372	chr11_88330643_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_846234	chr11_88295501_-	SINE	Alu	AluJb
CAediting_846235	chr11_88295518_-	SINE	Alu	AluJb
CAediting_846236	chr11_88322365_-	LINE	L1	L1PA10
CAediting_846237	chr11_88322366_-	LINE	L1	L1PA10
CAediting_846238	chr11_88322369_-	LINE	L1	L1PA10
CAediting_846239	chr11_88322372_-	LINE	L1	L1PA10
CAediting_846240	chr11_88322373_-	LINE	L1	L1PA10
CAediting_846241	chr11_88322379_-	LINE	L1	L1PA10
CAediting_846242	chr11_88322380_-	LINE	L1	L1PA10
CAediting_846243	chr11_88322382_-	LINE	L1	L1PA10
CAediting_846244	chr11_88322386_-	LINE	L1	L1PA10
CAediting_846245	chr11_88322387_-	LINE	L1	L1PA10
CAediting_846246	chr11_88322388_-	LINE	L1	L1PA10
CAediting_846247	chr11_88322392_-	LINE	L1	L1PA10
CAediting_846248	chr11_88322394_-	LINE	L1	L1PA10
CAediting_846249	chr11_88322396_-	LINE	L1	L1PA10
CAediting_846250	chr11_88322403_-	LINE	L1	L1PA10
CAediting_846251	chr11_88322410_-	LINE	L1	L1PA10
CAediting_846252	chr11_88322414_-	LINE	L1	L1PA10
CAediting_846253	chr11_88322415_-	LINE	L1	L1PA10
CAediting_846254	chr11_88322416_-	LINE	L1	L1PA10
CAediting_846255	chr11_88322417_-	LINE	L1	L1PA10
CAediting_846256	chr11_88322420_-	LINE	L1	L1PA10
CAediting_846257	chr11_88322422_-	LINE	L1	L1PA10
CAediting_846258	chr11_88322424_-	LINE	L1	L1PA10
CAediting_846259	chr11_88322429_-	LINE	L1	L1PA10
CAediting_846260	chr11_88322445_-	LINE	L1	L1PA10
CAediting_846261	chr11_88322446_-	LINE	L1	L1PA10
CAediting_846262	chr11_88322451_-	LINE	L1	L1PA10
CAediting_846263	chr11_88322453_-	LINE	L1	L1PA10
CAediting_846264	chr11_88322454_-	LINE	L1	L1PA10
CAediting_846265	chr11_88322456_-	LINE	L1	L1PA10
CAediting_846266	chr11_88322460_-	LINE	L1	L1PA10
CAediting_846267	chr11_88322466_-	LINE	L1	L1PA10
CAediting_846268	chr11_88322486_-	LINE	L1	L1PA10
CAediting_846269	chr11_88322487_-	LINE	L1	L1PA10
CAediting_846270	chr11_88322490_-	LINE	L1	L1PA10
CAediting_846271	chr11_88322491_-	LINE	L1	L1PA10
CAediting_846272	chr11_88322495_-	LINE	L1	L1PA10
CAediting_846273	chr11_88322505_-	LINE	L1	L1PA10
CAediting_846274	chr11_88322506_-	LINE	L1	L1PA10
CAediting_846275	chr11_88322511_-	LINE	L1	L1PA10
CAediting_846276	chr11_88322513_-	LINE	L1	L1PA10
CAediting_846277	chr11_88322517_-	LINE	L1	L1PA10
CAediting_846278	chr11_88322518_-	LINE	L1	L1PA10
CAediting_846279	chr11_88322520_-	LINE	L1	L1PA10
CAediting_846280	chr11_88322521_-	LINE	L1	L1PA10
CAediting_846281	chr11_88322522_-	LINE	L1	L1PA10
CAediting_846282	chr11_88322523_-	LINE	L1	L1PA10
CAediting_846283	chr11_88322524_-	LINE	L1	L1PA10
CAediting_846284	chr11_88322526_-	LINE	L1	L1PA10
CAediting_846285	chr11_88322531_-	LINE	L1	L1PA10
CAediting_846286	chr11_88322532_-	LINE	L1	L1PA10
CAediting_846287	chr11_88322533_-	LINE	L1	L1PA10
CAediting_846288	chr11_88322535_-	LINE	L1	L1PA10
CAediting_846289	chr11_88324160_-	LINE	L1	L1P3
CAediting_846290	chr11_88324167_-	LINE	L1	L1P3
CAediting_846291	chr11_88324168_-	LINE	L1	L1P3
CAediting_846292	chr11_88324169_-	LINE	L1	L1P3
CAediting_846293	chr11_88324172_-	LINE	L1	L1P3
CAediting_846294	chr11_88324176_-	LINE	L1	L1P3
CAediting_846295	chr11_88324182_-	LINE	L1	L1P3
CAediting_846296	chr11_88324212_-	LINE	L1	L1P3
CAediting_846297	chr11_88324213_-	LINE	L1	L1P3
CAediting_846298	chr11_88324219_-	LINE	L1	L1P3
CAediting_846299	chr11_88324227_-	LINE	L1	L1P3
CAediting_846300	chr11_88324228_-	LINE	L1	L1P3
CAediting_846301	chr11_88324229_-	LINE	L1	L1P3
CAediting_846302	chr11_88324232_-	LINE	L1	L1P3
CAediting_846303	chr11_88324238_-	LINE	L1	L1P3
CAediting_846304	chr11_88324248_-	LINE	L1	L1P3
CAediting_846305	chr11_88324249_-	LINE	L1	L1P3
CAediting_846306	chr11_88324259_-	LINE	L1	L1P3
CAediting_846307	chr11_88324263_-	LINE	L1	L1P3
CAediting_846308	chr11_88324264_-	LINE	L1	L1P3
CAediting_846309	chr11_88324271_-	LINE	L1	L1P3
CAediting_846310	chr11_88324272_-	LINE	L1	L1P3
CAediting_846311	chr11_88324278_-	LINE	L1	L1P3
CAediting_846312	chr11_88324293_-	LINE	L1	L1P3
CAediting_846313	chr11_88324303_-	LINE	L1	L1P3
CAediting_846314	chr11_88324313_-	LINE	L1	L1P3
CAediting_846316	chr11_88328736_-	SINE	Alu	AluSx
CAediting_846317	chr11_88328737_-	SINE	Alu	AluSx
CAediting_846318	chr11_88328739_-	SINE	Alu	AluSx
CAediting_846319	chr11_88328792_-	SINE	Alu	AluSx
CAediting_846320	chr11_88328795_-	SINE	Alu	AluSx
CAediting_846321	chr11_88328796_-	SINE	Alu	AluSx
CAediting_846322	chr11_88328797_-	SINE	Alu	AluSx
CAediting_846323	chr11_88328798_-	SINE	Alu	AluSx
CAediting_846324	chr11_88328801_-	SINE	Alu	AluSx
CAediting_846325	chr11_88328804_-	SINE	Alu	AluSx
CAediting_846326	chr11_88328805_-	SINE	Alu	AluSx
CAediting_846327	chr11_88328806_-	SINE	Alu	AluSx
CAediting_846328	chr11_88328807_-	SINE	Alu	AluSx
CAediting_846329	chr11_88328828_-	SINE	Alu	AluSx
CAediting_846330	chr11_88328830_-	SINE	Alu	AluSx
CAediting_846331	chr11_88328848_-	SINE	Alu	AluSx
CAediting_846332	chr11_88328849_-	SINE	Alu	AluSx
CAediting_846333	chr11_88329225_-	SINE	Alu	AluSx1
CAediting_846334	chr11_88329265_-	SINE	Alu	AluSx1
CAediting_846335	chr11_88329293_-	SINE	Alu	AluSx1
CAediting_846336	chr11_88329316_-	SINE	Alu	AluSx1
CAediting_846337	chr11_88329334_-	SINE	Alu	AluSx1
CAediting_846338	chr11_88329338_-	SINE	Alu	AluSx1
CAediting_846339	chr11_88329344_-	SINE	Alu	AluSx1
CAediting_846340	chr11_88329358_-	SINE	Alu	AluSx1
CAediting_846341	chr11_88329360_-	SINE	Alu	AluSx1
CAediting_846342	chr11_88329368_-	SINE	Alu	AluSx1
CAediting_846343	chr11_88329370_-	SINE	Alu	AluSx1
CAediting_846344	chr11_88329382_-	SINE	Alu	AluSx1
CAediting_846345	chr11_88329397_-	SINE	Alu	AluSx1
CAediting_846346	chr11_88329453_-	SINE	Alu	AluSx1
CAediting_846347	chr11_88329454_-	SINE	Alu	AluSx1
CAediting_846348	chr11_88329865_-	SINE	Alu	AluSx
CAediting_846349	chr11_88329887_-	SINE	Alu	AluSx
CAediting_846350	chr11_88329894_-	SINE	Alu	AluSx
CAediting_846351	chr11_88329895_-	SINE	Alu	AluSx
CAediting_846352	chr11_88329896_-	SINE	Alu	AluSx
CAediting_846354	chr11_88330434_-	SINE	Alu	AluSx
CAediting_846355	chr11_88330441_-	SINE	Alu	AluSx
CAediting_846356	chr11_88330460_-	SINE	Alu	AluSx
CAediting_846357	chr11_88330487_-	SINE	Alu	AluSx
CAediting_846358	chr11_88330513_-	SINE	Alu	AluSx
CAediting_846359	chr11_88330516_-	SINE	Alu	AluSx
CAediting_846360	chr11_88330517_-	SINE	Alu	AluSx
CAediting_846361	chr11_88330522_-	SINE	Alu	AluSx
CAediting_846362	chr11_88330525_-	SINE	Alu	AluSx
CAediting_846363	chr11_88330526_-	SINE	Alu	AluSx
CAediting_846364	chr11_88330527_-	SINE	Alu	AluSx
CAediting_846365	chr11_88330528_-	SINE	Alu	AluSx
CAediting_846366	chr11_88330531_-	SINE	Alu	AluSx
CAediting_846367	chr11_88330562_-	SINE	Alu	AluSx
CAediting_846368	chr11_88330576_-	SINE	Alu	AluSx
CAediting_846369	chr11_88330581_-	SINE	Alu	AluSx
CAediting_846370	chr11_88330596_-	SINE	Alu	AluSx
CAediting_846371	chr11_88330621_-	SINE	Alu	AluSx
CAediting_846372	chr11_88330643_-	SINE	Alu	AluSx

Top

RNA A-to-I editing events in the alternative splicing sites for CTSC

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000109861.14.CTSC.

Correlation between RNA A-to-I editing and PSI for ENSG00000109861.14.CTSC.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CTSC

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

CESC.CAediting_846276.ENSG00000109861.CTSC.png
Soverview

LUAD.CAediting_846280.ENSG00000109861.CTSC.png
Soverview

LUAD.CAediting_846281.ENSG00000109861.CTSC.png
Soverview

STAD.CAediting_846308.ENSG00000109861.CTSC.png
Soverview

THCA.CAediting_846253.ENSG00000109861.CTSC.png
Soverview

Top

Protein coding region RNA A-to-I editings for CTSC

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for CTSC

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846236	chr11_88322365_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1182	88322360	88322366	7mer-m8	88322359	88322381	149.00	-19.01
CAediting_846236	chr11_88322365_-	ENSG00000109861.14	ENST00000524463	hsa-miR-193a-5p	88322361	88322367	7mer-m8	88322360	88322381	140.00	-15.05
CAediting_846243	chr11_88322382_-	ENSG00000109861.14	ENST00000524463	hsa-miR-23a-3p	88322380	88322387	8mer-1a	88322380	88322398	144.00	-9.25
CAediting_846243	chr11_88322382_-	ENSG00000109861.14	ENST00000524463	hsa-miR-23b-3p	88322380	88322387	8mer-1a	88322380	88322401	141.00	-8.78
CAediting_846243	chr11_88322382_-	ENSG00000109861.14	ENST00000524463	hsa-miR-23c	88322380	88322387	8mer-1a	88322380	88322400	149.00	-9.31
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181a-5p	88322382	88322389	8mer-1a	88322382	88322404	151.00	-10.94
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181a-5p	88322382	88322389	8mer-1a	88322382	88322404	151.00	-10.94
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181b-5p	88322382	88322389	8mer-1a	88322382	88322404	143.00	-11.07
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181b-5p	88322382	88322389	8mer-1a	88322382	88322404	143.00	-11.07
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181c-5p	88322382	88322389	8mer-1a	88322382	88322400	148.00	-11.33
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-181d-5p	88322382	88322389	8mer-1a	88322382	88322407	147.00	-11.67
CAediting_846246	chr11_88322388_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4262	88322382	88322389	8mer-1a	88322382	88322399	143.00	-9.10
CAediting_846251	chr11_88322410_-	ENSG00000109861.14	ENST00000524463	hsa-miR-29a-5p	88322410	88322416	7mer-m8	88322409	88322430	145.00	-9.00
CAediting_846263	chr11_88322453_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5571-5p	88322449	88322455	7mer-m8	88322448	88322468	140.00	-12.21
CAediting_846266	chr11_88322460_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4717-3p	88322458	88322464	7mer-m8	88322457	88322477	155.00	-18.63
CAediting_846266	chr11_88322460_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5589-3p	88322456	88322463	8mer-1a	88322456	88322478	167.00	-22.82
CAediting_846266	chr11_88322460_-	ENSG00000109861.14	ENST00000524463	hsa-miR-942-3p	88322459	88322465	7mer-m8	88322458	88322478	149.00	-19.68
CAediting_846267	chr11_88322466_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3194-5p	88322464	88322470	7mer-m8	88322463	88322483	145.00	-20.90
CAediting_846267	chr11_88322466_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4435	88322462	88322468	7mer-m8	88322461	88322483	152.00	-19.77
CAediting_846267	chr11_88322466_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4435	88322462	88322468	7mer-m8	88322461	88322483	152.00	-19.77
CAediting_846273	chr11_88322505_-	ENSG00000109861.14	ENST00000524463	hsa-miR-2114-5p	88322500	88322506	7mer-m8	88322499	88322520	166.00	-25.91
CAediting_846273	chr11_88322505_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6734-3p	88322504	88322510	7mer-m8	88322503	88322525	161.00	-24.90
CAediting_846274	chr11_88322506_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3909	88322501	88322507	7mer-m8	88322500	88322521	140.00	-18.18
CAediting_846274	chr11_88322506_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6852-3p	88322501	88322507	7mer-m8	88322500	88322514	143.00	-15.80
CAediting_846274	chr11_88322506_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6867-3p	88322505	88322511	7mer-m8	88322504	88322524	147.00	-16.47
CAediting_846274	chr11_88322506_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7111-3p	88322502	88322508	7mer-m8	88322501	88322522	147.00	-13.67
CAediting_846278	chr11_88322518_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4448	88322514	88322521	8mer-1a	88322514	88322533	144.00	-17.85
CAediting_846278	chr11_88322518_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6772-3p	88322513	88322520	8mer-1a	88322513	88322535	142.00	-14.59
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-516a-3p	88322514	88322521	8mer-1a	88322514	88322531	150.00	-18.46
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-516a-3p	88322514	88322521	8mer-1a	88322514	88322531	150.00	-18.46
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-516b-3p	88322514	88322521	8mer-1a	88322514	88322531	150.00	-18.46
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-516b-3p	88322514	88322521	8mer-1a	88322514	88322531	150.00	-18.46
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7162-5p	88322514	88322521	8mer-1a	88322514	88322532	163.00	-23.96
CAediting_846280	chr11_88322521_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4753-3p	88322517	88322524	8mer-1a	88322517	88322537	166.00	-17.43
CAediting_846280	chr11_88322521_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6809-3p	88322517	88322523	7mer-m8	88322516	88322537	147.00	-13.77
CAediting_846280	chr11_88322521_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6844	88322520	88322526	7mer-m8	88322519	88322539	141.00	-9.52
CAediting_846280	chr11_88322521_-	ENSG00000109861.14	ENST00000524463	hsa-miR-942-5p	88322516	88322522	7mer-m8	88322515	88322536	160.00	-15.41
CAediting_846281	chr11_88322522_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4659a-3p	88322517	88322523	7mer-m8	88322516	88322540	151.00	-12.27
CAediting_846281	chr11_88322522_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4659b-3p	88322517	88322523	7mer-m8	88322516	88322536	148.00	-15.47
CAediting_846281	chr11_88322522_-	ENSG00000109861.14	ENST00000524463	hsa-miR-578	88322520	88322526	7mer-m8	88322519	88322541	144.00	-14.60
CAediting_846282	chr11_88322523_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4743-3p	88322520	88322527	8mer-1a	88322520	88322539	148.00	-13.64
CAediting_846285	chr11_88322531_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4312	88322529	88322535	7mer-m8	88322528	88322546	141.00	-11.54
CAediting_846292	chr11_88324169_-	ENSG00000109861.14	ENST00000524463	hsa-miR-95-5p	88324168	88324175	8mer-1a	88324168	88324187	159.00	-15.73
CAediting_846296	chr11_88324212_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7844-5p	88324209	88324214	6mer	88324208	88324229	145.00	-15.30
CAediting_846297	chr11_88324213_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1323	88324212	88324219	8mer-1a	88324212	88324232	154.00	-19.82
CAediting_846297	chr11_88324213_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548o-3p	88324212	88324219	8mer-1a	88324212	88324232	158.00	-12.26
CAediting_846297	chr11_88324213_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548o-3p	88324212	88324219	8mer-1a	88324212	88324232	158.00	-12.26
CAediting_846297	chr11_88324213_-	ENSG00000109861.14	ENST00000524463	hsa-miR-551b-5p	88324209	88324215	7mer-m8	88324208	88324229	152.00	-14.27
CAediting_846299	chr11_88324227_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1248	88324226	88324232	7mer-m8	88324225	88324253	156.00	-18.29
CAediting_846299	chr11_88324227_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4640-3p	88324222	88324228	7mer-m8	88324221	88324242	148.00	-18.83
CAediting_846299	chr11_88324227_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5088-3p	88324225	88324231	7mer-m8	88324224	88324247	147.00	-18.48
CAediting_846305	chr11_88324249_-	ENSG00000109861.14	ENST00000524463	hsa-miR-551b-5p	88324245	88324251	7mer-m8	88324244	88324269	147.00	-13.38
CAediting_846307	chr11_88324263_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4744	88324263	88324269	7mer-m8	88324262	88324284	155.00	-12.34
CAediting_846309	chr11_88324271_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5009-3p	88324270	88324276	7mer-m8	88324269	88324289	170.00	-18.77
CAediting_846310	chr11_88324272_-	ENSG00000109861.14	ENST00000524463	hsa-miR-372-5p	88324270	88324276	7mer-m8	88324269	88324291	167.00	-18.98
CAediting_846310	chr11_88324272_-	ENSG00000109861.14	ENST00000524463	hsa-miR-888-5p	88324269	88324275	7mer-m8	88324268	88324288	140.00	-8.18
CAediting_846311	chr11_88324278_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1468-3p	88324276	88324282	7mer-1a	88324276	88324299	143.00	-9.84
CAediting_846311	chr11_88324278_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548aw	88324276	88324282	7mer-m8	88324275	88324294	154.00	-17.17
CAediting_846312	chr11_88324293_-	ENSG00000109861.14	ENST00000524463	hsa-miR-196a-1-3p	88324288	88324294	7mer-m8	88324287	88324304	158.00	-15.44
CAediting_846312	chr11_88324293_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3065-5p	88324290	88324296	7mer-m8	88324289	88324313	152.00	-15.73
CAediting_846312	chr11_88324293_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3529-3p	88324289	88324295	7mer-m8	88324288	88324312	164.00	-16.56
CAediting_846237	chr11_88322366_-	ENSG00000109861.14	ENST00000524463	hsa-miR-152-5p	88322362	88322367	6mer	88322361	88322383	140.00	-14.17
CAediting_846237	chr11_88322366_-	ENSG00000109861.14	ENST00000524463	hsa-miR-182-3p	88322362	88322368	7mer-m8	88322361	88322381	149.00	-9.23
CAediting_846242	chr11_88322380_-	ENSG00000109861.14	ENST00000524463	hsa-miR-193a-5p	88322375	88322382	8mer-1a	88322375	88322396	140.00	-18.22
CAediting_846242	chr11_88322380_-	ENSG00000109861.14	ENST00000524463	hsa-miR-200c-5p	88322378	88322384	7mer-m8	88322377	88322398	152.00	-12.51
CAediting_846242	chr11_88322380_-	ENSG00000109861.14	ENST00000524463	hsa-miR-550a-3p	88322378	88322384	7mer-m8	88322377	88322398	140.00	-8.73
CAediting_846242	chr11_88322380_-	ENSG00000109861.14	ENST00000524463	hsa-miR-550a-3p	88322378	88322384	7mer-m8	88322377	88322398	140.00	-8.73
CAediting_846242	chr11_88322380_-	ENSG00000109861.14	ENST00000524463	hsa-miR-550a-3p	88322378	88322384	7mer-m8	88322377	88322398	140.00	-8.73
CAediting_846257	chr11_88322422_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4802-3p	88322420	88322427	8mer-1a	88322420	88322444	158.00	-17.71
CAediting_846257	chr11_88322422_-	ENSG00000109861.14	ENST00000524463	hsa-miR-490-5p	88322422	88322428	7mer-m8	88322421	88322440	142.00	-15.45
CAediting_846258	chr11_88322424_-	ENSG00000109861.14	ENST00000524463	hsa-let-7e-3p	88322420	88322426	7mer-m8	88322419	88322440	140.00	-9.02
CAediting_846264	chr11_88322454_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3074-5p	88322451	88322458	8mer-1a	88322451	88322472	146.00	-21.49
CAediting_846268	chr11_88322486_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3117-3p	88322481	88322487	7mer-m8	88322480	88322500	153.00	-11.71
CAediting_846268	chr11_88322486_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4759	88322481	88322488	8mer-1a	88322481	88322502	152.00	-16.92
CAediting_846270	chr11_88322490_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4427	88322490	88322496	7mer-m8	88322489	88322509	155.00	-16.37
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-130a-5p	88322517	88322523	7mer-m8	88322516	88322541	146.00	-9.47
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-2682-3p	88322514	88322521	8mer-1a	88322514	88322540	149.00	-21.25
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3152-5p	88322513	88322519	7mer-m8	88322512	88322533	152.00	-13.67
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6781-3p	88322514	88322521	8mer-1a	88322514	88322535	159.00	-20.37
CAediting_846284	chr11_88322526_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1202	88322523	88322530	8mer-1a	88322523	88322543	145.00	-18.69
CAediting_846284	chr11_88322526_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3972	88322523	88322530	8mer-1a	88322523	88322544	143.00	-14.81
CAediting_846293	chr11_88324172_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7-1-3p	88324169	88324176	8mer-1a	88324169	88324190	140.00	-6.49
CAediting_846293	chr11_88324172_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7-2-3p	88324169	88324176	8mer-1a	88324169	88324190	140.00	-3.25
CAediting_846294	chr11_88324176_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1250-5p	88324176	88324182	7mer-m8	88324175	88324198	152.00	-26.61
CAediting_846294	chr11_88324176_-	ENSG00000109861.14	ENST00000524463	hsa-miR-553	88324172	88324179	8mer-1a	88324172	88324197	146.00	-13.13
CAediting_846295	chr11_88324182_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6746-5p	88324182	88324188	7mer-m8	88324181	88324202	159.00	-28.10
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548at-3p	88324213	88324220	8mer-1a	88324213	88324232	149.00	-10.73
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548ay-3p	88324213	88324220	8mer-1a	88324213	88324233	153.00	-15.01
CAediting_846300	chr11_88324228_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3183	88324225	88324231	7mer-m8	88324224	88324245	140.00	-14.34
CAediting_846300	chr11_88324228_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4723-3p	88324225	88324231	7mer-m8	88324224	88324245	148.00	-22.32
CAediting_846300	chr11_88324228_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6769b-3p	88324225	88324231	7mer-m8	88324224	88324245	144.00	-20.30
CAediting_846300	chr11_88324228_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6892-3p	88324224	88324230	7mer-m8	88324223	88324244	150.00	-21.76
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5591-3p	88324234	88324240	7mer-m8	88324233	88324257	153.00	-17.59
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4637	88324247	88324253	7mer-m8	88324246	88324267	154.00	-11.41
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548ae-3p	88324243	88324249	7mer-m8	88324242	88324261	145.00	-9.94
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548ae-3p	88324243	88324249	7mer-m8	88324242	88324261	145.00	-9.94
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548ah-3p	88324243	88324249	7mer-m8	88324242	88324262	145.00	-11.45
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548aj-3p	88324243	88324249	7mer-m8	88324242	88324261	145.00	-7.83
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548aj-3p	88324243	88324249	7mer-m8	88324242	88324261	145.00	-7.83
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548am-3p	88324243	88324249	7mer-m8	88324242	88324262	145.00	-11.18
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548aq-3p	88324243	88324249	7mer-m8	88324242	88324262	145.00	-11.45
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548j-3p	88324243	88324249	7mer-m8	88324242	88324262	146.00	-11.84
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548x-3p	88324243	88324249	7mer-m8	88324242	88324260	145.00	-7.83
CAediting_846304	chr11_88324248_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548x-3p	88324243	88324249	7mer-m8	88324242	88324260	145.00	-7.83
CAediting_846301	chr11_88324229_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3667-3p	88324225	88324231	7mer-m8	88324224	88324245	140.00	-14.28

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-let-7a-3p	88324238	88324244	7mer-m8	88324237	88324256	141	-10.16
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-let-7a-3p	88324238	88324244	7mer-m8	88324237	88324256	141	-10.16
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-let-7b-3p	88324238	88324244	7mer-m8	88324237	88324257	141	-9.48
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-let-7f-1-3p	88324238	88324244	7mer-m8	88324237	88324257	149	-12.57
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-1-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-16.1
CAediting_846278	chr11_88322518_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-1-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-16.1
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-1-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-16.1
CAediting_846277	chr11_88322517_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-2-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-14.79
CAediting_846278	chr11_88322518_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-2-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-14.79
CAediting_846279	chr11_88322520_-	ENSG00000109861.14	ENST00000524463	hsa-miR-103a-2-5p	88322514	88322521	8mer-1a	88322514	88322539	147	-14.79
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1185-1-3p	88324238	88324243	6mer	88324237	88324258	142	-14.4
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1185-2-3p	88324238	88324243	6mer	88324237	88324258	142	-14.4
CAediting_846306	chr11_88324259_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1246	88324258	88324264	7mer-m8	88324257	88324275	140	-9
CAediting_846307	chr11_88324263_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1246	88324258	88324264	7mer-m8	88324257	88324275	140	-9
CAediting_846258	chr11_88322424_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1246	88322422	88322429	8mer-1a	88322422	88322439	147	-19.45
CAediting_846247	chr11_88322392_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1264	88322388	88322395	8mer-1a	88322388	88322411	143	-7.88
CAediting_846248	chr11_88322394_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1264	88322388	88322395	8mer-1a	88322388	88322411	143	-7.88
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1284	88324237	88324243	7mer-m8	88324236	88324257	155	-14.79
CAediting_846275	chr11_88322511_-	ENSG00000109861.14	ENST00000524463	hsa-miR-137-3p	88322511	88322517	7mer-m8	88322510	88322532	145	-11.14
CAediting_846276	chr11_88322513_-	ENSG00000109861.14	ENST00000524463	hsa-miR-137-3p	88322511	88322517	7mer-m8	88322510	88322532	145	-11.14
CAediting_846294	chr11_88324176_-	ENSG00000109861.14	ENST00000524463	hsa-miR-224-3p	88324172	88324179	8mer-1a	88324172	88324194	152	-14.86
CAediting_846295	chr11_88324182_-	ENSG00000109861.14	ENST00000524463	hsa-miR-30c-1-3p	88324182	88324188	7mer-m8	88324181	88324204	149	-23.35
CAediting_846302	chr11_88324232_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3144-3p	88324231	88324238	8mer-1a	88324231	88324252	150	-11.69
CAediting_846268	chr11_88322486_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3159	88322481	88322488	8mer-1a	88322481	88322502	142	-9.83
CAediting_846269	chr11_88322487_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3159	88322481	88322488	8mer-1a	88322481	88322502	142	-9.83
CAediting_846295	chr11_88324182_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3192-5p	88324181	88324187	7mer-m8	88324180	88324205	154	-20.59
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3654	88324217	88324223	7mer-m8	88324216	88324234	140	-13.13
CAediting_846259	chr11_88322429_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3658	88322428	88322434	7mer-m8	88322427	88322447	146	-10.1
CAediting_846272	chr11_88322495_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3976	88322494	88322500	7mer-m8	88322493	88322516	145	-13.32
CAediting_846306	chr11_88324259_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4426	88324255	88324261	7mer-m8	88324254	88324270	145	-10.22
CAediting_846273	chr11_88322505_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4446-5p	88322505	88322511	7mer-m8	88322504	88322525	147	-12.7
CAediting_846274	chr11_88322506_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4446-5p	88322505	88322511	7mer-m8	88322504	88322525	147	-12.7
CAediting_846265	chr11_88322456_-	ENSG00000109861.14	ENST00000524463	hsa-miR-448	88322456	88322462	7mer-m8	88322455	88322481	153	-14.35
CAediting_846266	chr11_88322460_-	ENSG00000109861.14	ENST00000524463	hsa-miR-448	88322456	88322462	7mer-m8	88322455	88322481	153	-14.35
CAediting_846311	chr11_88324278_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4495	88324275	88324281	7mer-m8	88324274	88324294	140	-6.22
CAediting_846306	chr11_88324259_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4647	88324255	88324261	7mer-m8	88324254	88324276	140	-10.61
CAediting_846238	chr11_88322369_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4775	88322369	88322375	7mer-m8	88322368	88322389	154	-5.72
CAediting_846239	chr11_88322372_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4775	88322369	88322375	7mer-m8	88322368	88322389	154	-5.72
CAediting_846240	chr11_88322373_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4775	88322369	88322375	7mer-m8	88322368	88322389	154	-5.72
CAediting_846294	chr11_88324176_-	ENSG00000109861.14	ENST00000524463	hsa-miR-522-3p	88324172	88324179	8mer-1a	88324172	88324193	142	-8.99
CAediting_846289	chr11_88324160_-	ENSG00000109861.14	ENST00000524463	hsa-miR-541-5p	88324155	88324161	7mer-m8	88324154	88324177	153	-15.78
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548f-3p	88324213	88324220	8mer-1a	88324213	88324230	147	-8.24
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548f-3p	88324213	88324220	8mer-1a	88324213	88324230	147	-8.24
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548f-3p	88324213	88324220	8mer-1a	88324213	88324230	147	-8.24
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548f-3p	88324213	88324220	8mer-1a	88324213	88324230	147	-8.24
CAediting_846298	chr11_88324219_-	ENSG00000109861.14	ENST00000524463	hsa-miR-548f-3p	88324213	88324220	8mer-1a	88324213	88324230	147	-8.24
CAediting_846271	chr11_88322491_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5585-3p	88322490	88322497	8mer-1a	88322490	88322511	144	-9.92
CAediting_846272	chr11_88322495_-	ENSG00000109861.14	ENST00000524463	hsa-miR-5585-3p	88322490	88322497	8mer-1a	88322490	88322511	144	-9.92
CAediting_846262	chr11_88322451_-	ENSG00000109861.14	ENST00000524463	hsa-miR-590-3p	88322449	88322454	6mer	88322448	88322469	142	-16.68
CAediting_846263	chr11_88322453_-	ENSG00000109861.14	ENST00000524463	hsa-miR-590-3p	88322449	88322454	6mer	88322448	88322469	142	-16.68
CAediting_846264	chr11_88322454_-	ENSG00000109861.14	ENST00000524463	hsa-miR-590-3p	88322449	88322454	6mer	88322448	88322469	142	-16.68
CAediting_846295	chr11_88324182_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6788-5p	88324182	88324188	7mer-m8	88324181	88324199	147	-22.02
CAediting_846275	chr11_88322511_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6883-3p	88322506	88322513	8mer-1a	88322506	88322526	142	-12.16
CAediting_846250	chr11_88322403_-	ENSG00000109861.14	ENST00000524463	hsa-miR-7151-5p	88322398	88322404	7mer-m8	88322397	88322418	142	-12.34
CAediting_846257	chr11_88322422_-	ENSG00000109861.14	ENST00000524463	hsa-miR-8076	88322420	88322427	8mer-1a	88322420	88322440	149	-10.85
CAediting_846258	chr11_88322424_-	ENSG00000109861.14	ENST00000524463	hsa-miR-8076	88322420	88322427	8mer-1a	88322420	88322440	149	-10.85
CAediting_846309	chr11_88324271_-	ENSG00000109861.14	ENST00000524463	hsa-miR-8087	88324266	88324272	7mer-m8	88324265	88324288	141	-10.47
CAediting_846267	chr11_88322466_-	ENSG00000109861.14	ENST00000524463	hsa-miR-889-5p	88322460	88322466	7mer-1a	88322460	88322482	143	-17.34
CAediting_846312	chr11_88324293_-	ENSG00000109861.14	ENST00000524463	hsa-miR-95-5p	88324290	88324296	7mer-m8	88324289	88324309	151	-8.59
CAediting_846303	chr11_88324238_-	ENSG00000109861.14	ENST00000524463	hsa-miR-98-3p	88324238	88324244	7mer-m8	88324237	88324258	142	-10.98

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000109861.14	ENST00000524463	hsa-miR-605-3p	88326235	88326241	7mer-m8	88326234	88326256	141	-15.98
CAediting_688080	chr9_63819626_+	ENSG00000109861.14	ENST00000524463	hsa-miR-4477b	88321825	88321831	7mer-m8	88321824	88321845	145	-13.56
CAediting_117844	chr1_162342605_+	ENSG00000109861.14	ENST00000227266	hsa-miR-556-3p	88293653	88293660	8mer-1a	88293653	88293672	161	-15.65
CAediting_1229414	chr17_67471546_+	ENSG00000109861.14	ENST00000524463	hsa-miR-548aa	88325123	88325129	7mer-m8	88325122	88325142	152	-9.86
CAediting_1229414	chr17_67471546_+	ENSG00000109861.14	ENST00000524463	hsa-miR-548aa	88324093	88324100	8mer-1a	88324093	88324119	157	-21.74
CAediting_1229414	chr17_67471546_+	ENSG00000109861.14	ENST00000524463	hsa-miR-548aa	88320938	88320944	7mer-m8	88320937	88320961	142	-10.54
CAediting_1306323	chr19_13836462_-	ENSG00000109861.14	ENST00000524463	hsa-miR-27a-3p	88324747	88324753	7mer-m8	88324746	88324766	144	-16.82
CAediting_1368054	chr19_46709310_-	ENSG00000109861.14	ENST00000524463	hsa-miR-320e	88324762	88324768	7mer-m8	88324761	88324776	147	-21.57
CAediting_117844	chr1_162342605_+	ENSG00000109861.14	ENST00000524463	hsa-miR-556-3p	88322340	88322346	7mer-m8	88322339	88322361	147	-11.8
CAediting_396018	chr5_1062918_-	ENSG00000109861.14	ENST00000524463	hsa-miR-4635	88321824	88321830	7mer-m8	88321823	88321845	148	-21.7
CAediting_414656	chr5_72878640_+	ENSG00000109861.14	ENST00000524463	hsa-miR-4804-3p	88321429	88321435	7mer-m8	88321428	88321448	157	-24.67
CAediting_524911	chr7_5495852_-	ENSG00000109861.14	ENST00000524463	hsa-miR-589-3p	88325110	88325116	7mer-m8	88325109	88325133	142	-15.88

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573001	chr7_92204086_-	ENSG00000109861.14	ENST00000524463	hsa-miR-1285-5p	88322597	88322603	7mer-m8	88322596	88322616	140	-14.7
CAediting_442554	chr5_154685830_+	ENSG00000109861.14	ENST00000524463	hsa-miR-1303	88325938	88325944	7mer-m8	88325937	88325958	149	-15.67
CAediting_393	chr1_1167164_+	ENSG00000109861.14	ENST00000524463	hsa-miR-200b-3p	88325172	88325178	7mer-m8	88325171	88325190	153	-10.74
CAediting_393	chr1_1167164_+	ENSG00000109861.14	ENST00000524463	hsa-miR-200b-3p	88323025	88323031	7mer-m8	88323024	88323045	140	-7.55
CAediting_1368054	chr19_46709310_-	ENSG00000109861.14	ENST00000524463	hsa-miR-320e	88323328	88323334	7mer-m8	88323327	88323344	141	-13.29
CAediting_604450	chr7_133034877_-	ENSG00000109861.14	ENST00000524463	hsa-miR-3654	88324217	88324223	7mer-m8	88324216	88324234	140	-13.13
CAediting_524911	chr7_5495852_-	ENSG00000109861.14	ENST00000524463	hsa-miR-589-3p	88324914	88324920	7mer-m8	88324913	88324937	149	-18.96
CAediting_468389	chr6_31355314_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6891-5p	88325271	88325276	6mer	88325270	88325287	142	-19.82
CAediting_468389	chr6_31355314_-	ENSG00000109861.14	ENST00000524463	hsa-miR-6891-5p	88322890	88322896	7mer-m8	88322889	88322907	146	-17.03

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CTSC

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for CTSC

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_846245	chr11_88322387_-	.	.	0.035656817795496	0.267367291830802	.	.
LUSC	CAediting_846246	chr11_88322388_-	.	.	0.00260669699077236	0.285630392710705	.	.
SKCM	CAediting_846246	chr11_88322388_-	0.00538427626891768	0.283412103655266	.	.	.	.
KIRC	CAediting_846248	chr11_88322394_-	.	.	0.0256241468265306	0.226592471162625	.	.
KIRP	CAediting_846248	chr11_88322394_-	.	.	0.00832173641935794	0.31987419314679	.	.
LUSC	CAediting_846249	chr11_88322396_-	0.000150098317783013	0.251740444629279	.	.	.	.
HNSC	CAediting_846249	chr11_88322396_-	0.000431631578014719	0.243619015922144	0.0047253555286813	0.196592218053265	.	.
THCA	CAediting_846249	chr11_88322396_-	0.00564683249311066	0.224213523776769	.	.	.	.
KIRP	CAediting_846249	chr11_88322396_-	0.00174986954092017	0.240426476957619	0.0387542652769467	0.160102102654604	.	.
ESCA	CAediting_846249	chr11_88322396_-	0.00548738436851922	0.290436730319132	0.00876108588760494	0.274802991267323	.	.
SKCM	CAediting_846249	chr11_88322396_-	1.87301310166076e-07	0.436469261317132	.	.	0.0144221980952297	0.213335803372325
HNSC	CAediting_846252	chr11_88322414_-	0.0144211504821837	0.255728316758547	.	.	.	.
BLCA	CAediting_846253	chr11_88322415_-	0.0362091757656769	0.262386289529332	.	.	.	.
HNSC	CAediting_846253	chr11_88322415_-	4.04944102495066e-07	0.345049534793861	.	.	.	.
KIRP	CAediting_846253	chr11_88322415_-	2.4289963721963e-06	0.354460391050798	.	.	.	.
ESCA	CAediting_846253	chr11_88322415_-	0.021703236061874	0.236559029757738	.	.	.	.
LAML	CAediting_846253	chr11_88322415_-	0.034291044005401	0.299992260467909	.	.	.	.
SKCM	CAediting_846253	chr11_88322415_-	1.21458085284382e-08	0.464593642318431	.	.	.	.
LUSC	CAediting_846256	chr11_88322420_-	0.0264258462523078	0.178318163476725	.	.	.	.
HNSC	CAediting_846256	chr11_88322420_-	0.00320148343256021	0.258631341999382	.	.	.	.
ESCA	CAediting_846256	chr11_88322420_-	0.0162606702742322	0.274867840060099	.	.	.	.
SKCM	CAediting_846256	chr11_88322420_-	0.00200840945267881	0.328600627608655	.	.	0.000129401127107116	0.401134991383381
HNSC	CAediting_846263	chr11_88322453_-	.	.	.	.	0.0429447610027902	0.28461518375147
BLCA	CAediting_846267	chr11_88322466_-	0.036824227988969	0.290302783971406	.	.	0.00365259551105911	0.396087336303332
LUAD	CAediting_846267	chr11_88322466_-	0.00284409977175049	0.284497604923233	.	.	.	.
HNSC	CAediting_846267	chr11_88322466_-	3.02770856320898e-05	0.318656960375638	.	.	.	.
THCA	CAediting_846267	chr11_88322466_-	0.0311487298123461	0.197696382275943	.	.	.	.
KIRC	CAediting_846267	chr11_88322466_-	0.00790557923324497	0.19794294550402	.	.	.	.
KIRP	CAediting_846267	chr11_88322466_-	0.00773116894478654	0.229175368375843	.	.	.	.
SKCM	CAediting_846267	chr11_88322466_-	4.52620500501473e-09	0.527346817970752	.	.	.	.
BRCA	CAediting_846275	chr11_88322511_-	0.00873280173854488	0.287851330011976	.	.	0.0278524061667076	0.242956772017178
HNSC	CAediting_846275	chr11_88322511_-	0.0344320703350249	0.141393064965107	.	.	.	.
KIRP	CAediting_846275	chr11_88322511_-	0.000360687409200022	0.272838600904729	.	.	.	.
SKCM	CAediting_846275	chr11_88322511_-	2.65871127671587e-05	0.331590894402665	.	.	.	.
BLCA	CAediting_846276	chr11_88322513_-	.	.	.	.	0.0238461917336548	0.31921816368923
LUSC	CAediting_846276	chr11_88322513_-	.	.	0.0342430376578995	0.163465462393262	.	.
HNSC	CAediting_846276	chr11_88322513_-	0.0302667102574476	0.166237791177385	.	.	.	.
SKCM	CAediting_846276	chr11_88322513_-	0.00300459338657522	0.277951746175223	.	.	.	.
HNSC	CAediting_846279	chr11_88322520_-	0.00499481824980712	0.20503682712842	.	.	.	.
LAML	CAediting_846279	chr11_88322520_-	.	.	.	.	0.000247829481614583	0.459890333271319
HNSC	CAediting_846280	chr11_88322521_-	0.00253579549994892	0.223113355392768	.	.	.	.
SKCM	CAediting_846280	chr11_88322521_-	0.0370865196741024	0.19217535841601	.	.	.	.
HNSC	CAediting_846281	chr11_88322522_-	0.00544357356207553	0.208690874026324	.	.	.	.
KIRP	CAediting_846281	chr11_88322522_-	0.000281903773304406	0.292439072822904	.	.	.	.
SKCM	CAediting_846282	chr11_88322523_-	7.41166970501316e-05	0.401130919333073	.	.	.	.
HNSC	CAediting_846285	chr11_88322531_-	.	.	.	.	0.0149312991533075	0.184799666040146
HNSC	CAediting_846286	chr11_88322532_-	.	.	.	.	0.028160100187305	0.140547077778018
KIRP	CAediting_846286	chr11_88322532_-	0.0118110426934075	0.191038855998273	.	.	.	.
SKCM	CAediting_846286	chr11_88322532_-	0.0209321927769297	0.172993983700109	.	.	.	.
LUSC	CAediting_846292	chr11_88324169_-	0.0303381064235446	0.228444853210937	.	.	.	.
HNSC	CAediting_846292	chr11_88324169_-	0.0134805941046808	0.256776173736209	.	.	.	.
KIRP	CAediting_846292	chr11_88324169_-	0.0147756664800697	0.273388055115573	.	.	.	.
ESCA	CAediting_846292	chr11_88324169_-	.	.	0.0159846681033517	0.312448074985849	.	.
LUSC	CAediting_846296	chr11_88324212_-	0.000324430048481599	0.322725897015158	.	.	.	.
HNSC	CAediting_846296	chr11_88324212_-	5.16525191922588e-05	0.37123287078401	.	.	.	.
THCA	CAediting_846296	chr11_88324212_-	.	.	.	.	0.0479694471735332	0.265497402295168
KIRP	CAediting_846296	chr11_88324212_-	0.0374766283545867	0.222182182504876	.	.	.	.
SKCM	CAediting_846296	chr11_88324212_-	5.39773124057799e-06	0.513764555892743	.	.	.	.
LUSC	CAediting_846297	chr11_88324213_-	0.0384759606285743	0.22233049942569	.	.	.	.
HNSC	CAediting_846297	chr11_88324213_-	0.0143564114954084	0.249179706740378	.	.	.	.
STAD	CAediting_846297	chr11_88324213_-	0.0343326025330094	0.294081685377828	.	.	.	.
ESCA	CAediting_846305	chr11_88324249_-	.	.	0.00149267412277262	0.377782400217933	.	.
ESCA	CAediting_846310	chr11_88324272_-	.	.	0.020794683847359	0.277866486082124	.	.

Top

Relation with cancer stages for CTSC

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
ESCA	pathologic_stage	CAediting_846292	chr11_88324169_-	0.0362202208315063	0.28311151983396
HNSC	clinical_stage	CAediting_846285	chr11_88322531_-	0.0171829330674997	-0.185297722129777
HNSC	pathologic_stage	CAediting_846256	chr11_88322420_-	0.0387648963987546	0.191349263593655
KIRC	pathologic_stage	CAediting_846256	chr11_88322420_-	0.0233746115792532	0.21042542148243
KIRP	pathologic_stage	CAediting_846285	chr11_88322531_-	0.0454675154285287	0.169351642672272
KIRP	pathologic_stage	CAediting_846286	chr11_88322532_-	0.0354297711702167	0.168556473528221
KIRP	pathologic_stage	CAediting_846297	chr11_88324213_-	0.0489856373927215	0.277120173696518
LUAD	pathologic_stage	CAediting_846253	chr11_88322415_-	0.0229249211427547	0.210196183339696
LUSC	pathologic_stage	CAediting_846275	chr11_88322511_-	0.0148779702590409	0.151184875249472
LUSC	pathologic_stage	CAediting_846279	chr11_88322520_-	0.0014325395068511	0.216603679975419
LUSC	pathologic_stage	CAediting_846280	chr11_88322521_-	0.0150040201730809	0.166863498408813
LUSC	pathologic_stage	CAediting_846281	chr11_88322522_-	0.0392323900600784	0.14377599520472
LUSC	pathologic_stage	CAediting_846282	chr11_88322523_-	0.0467576044276078	0.150107273713772
LUSC	pathologic_stage	CAediting_846286	chr11_88322532_-	0.0129324526216405	0.149454027785982
SKCM	pathologic_stage	CAediting_846246	chr11_88322388_-	0.0211735304898818	-0.251199635031877
STAD	pathologic_stage	CAediting_846299	chr11_88324227_-	0.0312141953922699	0.244167136688164

Top

Relation with survival for CTSC

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LUAD	CAediting_846281	chr11_88322522_-	0.0123067320339103	0.0184025	0.050131
HNSC	CAediting_846278	chr11_88322518_-	0.00977051203325507	0.0100025	62.7758
SKCM	CAediting_846256	chr11_88322420_-	0.019269200845749	0.0400156	12.174

Top

RelatedDrugs for CTSC

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for CTSC

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
CTSC	C0030360	Papillon-Lefevre Disease	17	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
CTSC	C1855627	HAIM-MUNK SYNDROME	4	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
CTSC	C4551681	Periodontitis, Aggressive, 1	3	CTD_human;GENOMICS_ENGLAND;UNIPROT
CTSC	C2713394	Haim-Monk Syndrome	2	CTD_human
CTSC	C0024623	Malignant neoplasm of stomach	1	CTD_human
CTSC	C0031090	Periodontal Diseases	1	CTD_human
CTSC	C0034219	Alveolar pyorrhea	1	CTD_human
CTSC	C0038356	Stomach Neoplasms	1	CTD_human
CTSC	C0151744	Myocardial Ischemia	1	CTD_human
CTSC	C0162820	Dermatitis, Allergic Contact	1	CTD_human
CTSC	C0235874	Disease Exacerbation	1	CTD_human
CTSC	C1708349	Hereditary Diffuse Gastric Cancer	1	CTD_human
CTSC	C4025886	Severe periodontitis	1	GENOMICS_ENGLAND
CTSC	C4551675	Keratoderma, Palmoplantar	1	GENOMICS_ENGLAND

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene