Home

Download

Statistics

Examples

Help

Contact

Editing gene: PHTF1 (CAeditome ID:10745)

Gene summary for PHTF1

Gene summary

Gene information	Gene symbol	PHTF1
	Gene ID	10745
	Gene name	putative homeodomain transcription factor 1
	Synonyms	PHTF
	Cytomap	1p13.2
	Type of gene	protein-coding
	Description	protein PHTF1
	Modification date	20210518
	UniProtAcc	Q9UMS5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for PHTF1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000116793.14

RNA A-to-I editing events in Cancer.

CAediting_89636(113702583, -), CAediting_89637(113702584, -), CAediting_89638(113702586, -), CAediting_89639(113703580, -), CAediting_89640(113709037, -), CAediting_89641(113715398, -), CAediting_89642(113715445, -), CAediting_89643(113715484, -), CAediting_89644(113715490, -), CAediting_89645(113715491, -), CAediting_89646(113715536, -), CAediting_89647(113715565, -), CAediting_89648(113715566, -), CAediting_89649(113715572, -), CAediting_89650(113716398, -), CAediting_89651(113716410, -), CAediting_89652(113716411, -), CAediting_89653(113716417, -), CAediting_89654(113716421, -), CAediting_89655(113716424, -), CAediting_89656(113716437, -), CAediting_89657(113716442, -), CAediting_89658(113716452, -), CAediting_89659(113716453, -), CAediting_89660(113716455, -), CAediting_89661(113716456, -), CAediting_89662(113716458, -), CAediting_89663(113716460, -), CAediting_89664(113716466, -), CAediting_89665(113716473, -), CAediting_89666(113716477, -), CAediting_89667(113716495, -), CAediting_89668(113716509, -), CAediting_89669(113716513, -), CAediting_89670(113716519, -), CAediting_89671(113716527, -), CAediting_89672(113716528, -), CAediting_89673(113716531, -), CAediting_89674(113716544, -), CAediting_89675(113716548, -), CAediting_89676(113716553, -), CAediting_89677(113716569, -), CAediting_89678(113716577, -), CAediting_89679(113716593, -), CAediting_89680(113716623, -), CAediting_89681(113716625, -), CAediting_89682(113719015, -), CAediting_89683(113719066, -), CAediting_89684(113719073, -), CAediting_89685(113719092, -), CAediting_89686(113719093, -), CAediting_89687(113719097, -), CAediting_89688(113719098, -), CAediting_89689(113719112, -), CAediting_89690(113719138, -), CAediting_89691(113719139, -), CAediting_89692(113719161, -), CAediting_89693(113719313, -), CAediting_89694(113721042, -), CAediting_89695(113721061, -), CAediting_89696(113721889, -), CAediting_89697(113721890, -), CAediting_89698(113722710, -), CAediting_89699(113723220, -), CAediting_89700(113723238, -), CAediting_89701(113723246, -), CAediting_89702(113723263, -), CAediting_89703(113723267, -), CAediting_89704(113723274, -), CAediting_89705(113723275, -), CAediting_89706(113723283, -), CAediting_89707(113723289, -), CAediting_89708(113723292, -), CAediting_89709(113723315, -), CAediting_89710(113723316, -), CAediting_89711(113723322, -), CAediting_89712(113723348, -), CAediting_89713(113723351, -), CAediting_89714(113723354, -), CAediting_89715(113723356, -), CAediting_89716(113723381, -), CAediting_89717(113724374, -), CAediting_89718(113724395, -), CAediting_89719(113724458, -), CAediting_89720(113724459, -), CAediting_89721(113724464, -), CAediting_89722(113724484, -), CAediting_89723(113725798, -), CAediting_89724(113725891, -), CAediting_89725(113732313, -), CAediting_89726(113732928, -), CAediting_89727(113732975, -), CAediting_89728(113732986, -), CAediting_89729(113732989, -), CAediting_89730(113732994, -), CAediting_89731(113733012, -), CAediting_89732(113733021, -), CAediting_89733(113733035, -), CAediting_89734(113733058, -), CAediting_89735(113733104, -), CAediting_89736(113733108, -), CAediting_89737(113733157, -), CAediting_89738(113733160, -), CAediting_89739(113733175, -), CAediting_89740(113734252, -), CAediting_89741(113737716, -), CAediting_89742(113737723, -), CAediting_89743(113739126, -), CAediting_89744(113740813, -), CAediting_89745(113740859, -), CAediting_89746(113740919, -), CAediting_89747(113740948, -), CAediting_89748(113740949, -), CAediting_89749(113741000, -), CAediting_89750(113743014, -), CAediting_89751(113743041, -), CAediting_89752(113743046, -), CAediting_89753(113743072, -), CAediting_89754(113744705, -), CAediting_89755(113744706, -), CAediting_89756(113744715, -), CAediting_89757(113744733, -), CAediting_89758(113744760, -), CAediting_89759(113744773, -), CAediting_89760(113744779, -), CAediting_89761(113744799, -), CAediting_89762(113744800, -), CAediting_89763(113744827, -), CAediting_89764(113744837, -), CAediting_89765(113744849, -), CAediting_89766(113744866, -), CAediting_89767(113744918, -), CAediting_89768(113744927, -), CAediting_89769(113744941, -), CAediting_89770(113744945, -), CAediting_89771(113748008, -), CAediting_89772(113748012, -), CAediting_89773(113748025, -), CAediting_89774(113748061, -), CAediting_89775(113748075, -), CAediting_89776(113748086, -), CAediting_89777(113748093, -), CAediting_89778(113748116, -), CAediting_89779(113748132, -), CAediting_89780(113748142, -), CAediting_89781(113748147, -), CAediting_89782(113748154, -), CAediting_89783(113748167, -), CAediting_89784(113748183, -), CAediting_89785(113748224, -), CAediting_89786(113748235, -), CAediting_89787(113748251, -), CAediting_89788(113748252, -), CAediting_89789(113748260, -), CAediting_89790(113748568, -), CAediting_89791(113748570, -), CAediting_89792(113748582, -), CAediting_89793(113748617, -), CAediting_89794(113748623, -), CAediting_89795(113748632, -), CAediting_89796(113748655, -), CAediting_89797(113748658, -), CAediting_89798(113748662, -), CAediting_89799(113748672, -), CAediting_89800(113748698, -), CAediting_89801(113748711, -), CAediting_89802(113748712, -), CAediting_89803(113748714, -), CAediting_89804(113748715, -), CAediting_89805(113748718, -), CAediting_89806(113748754, -), CAediting_89807(113748755, -), CAediting_89808(113748760, -), CAediting_89809(113748804, -), CAediting_89810(113748813, -), CAediting_89811(113748821, -), CAediting_89812(113750262, -), CAediting_89813(113750996, -), CAediting_89814(113750997, -), CAediting_89815(113751003, -), CAediting_89816(113751018, -), CAediting_89817(113752497, -), CAediting_89818(113753517, -), CAediting_89819(113753525, -), CAediting_89820(113753552, -), CAediting_89821(113753556, -), CAediting_89822(113753566, -), CAediting_89823(113753647, -), CAediting_89824(113753870, -), CAediting_89825(113753874, -), CAediting_89826(113754194, -), CAediting_89827(113754256, -), CAediting_89828(113754316, -),

Top

RNA editing positional annotations for PHTF1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_89636	chr1_113702583_-	ncRNA_intronic
CAediting_89637	chr1_113702584_-	ncRNA_intronic
CAediting_89638	chr1_113702586_-	ncRNA_intronic
CAediting_89639	chr1_113703580_-	ncRNA_intronic
CAediting_89640	chr1_113709037_-	ncRNA_intronic
CAediting_89641	chr1_113715398_-	intronic
CAediting_89642	chr1_113715445_-	intronic
CAediting_89643	chr1_113715484_-	intronic
CAediting_89644	chr1_113715490_-	intronic
CAediting_89645	chr1_113715491_-	intronic
CAediting_89646	chr1_113715536_-	intronic
CAediting_89647	chr1_113715565_-	intronic
CAediting_89648	chr1_113715566_-	intronic
CAediting_89649	chr1_113715572_-	intronic
CAediting_89650	chr1_113716398_-	intronic
CAediting_89651	chr1_113716410_-	intronic
CAediting_89652	chr1_113716411_-	intronic
CAediting_89653	chr1_113716417_-	intronic
CAediting_89654	chr1_113716421_-	intronic
CAediting_89655	chr1_113716424_-	intronic
CAediting_89656	chr1_113716437_-	intronic
CAediting_89657	chr1_113716442_-	intronic
CAediting_89658	chr1_113716452_-	intronic
CAediting_89659	chr1_113716453_-	intronic
CAediting_89660	chr1_113716455_-	intronic
CAediting_89661	chr1_113716456_-	intronic
CAediting_89662	chr1_113716458_-	intronic
CAediting_89663	chr1_113716460_-	intronic
CAediting_89664	chr1_113716466_-	intronic
CAediting_89665	chr1_113716473_-	intronic
CAediting_89666	chr1_113716477_-	intronic
CAediting_89667	chr1_113716495_-	intronic
CAediting_89668	chr1_113716509_-	intronic
CAediting_89669	chr1_113716513_-	intronic
CAediting_89670	chr1_113716519_-	intronic
CAediting_89671	chr1_113716527_-	intronic
CAediting_89672	chr1_113716528_-	intronic
CAediting_89673	chr1_113716531_-	intronic
CAediting_89674	chr1_113716544_-	intronic
CAediting_89675	chr1_113716548_-	intronic
CAediting_89676	chr1_113716553_-	intronic
CAediting_89677	chr1_113716569_-	intronic
CAediting_89678	chr1_113716577_-	intronic
CAediting_89679	chr1_113716593_-	intronic
CAediting_89680	chr1_113716623_-	intronic
CAediting_89681	chr1_113716625_-	intronic
CAediting_89682	chr1_113719015_-	intronic
CAediting_89683	chr1_113719066_-	intronic
CAediting_89684	chr1_113719073_-	intronic
CAediting_89685	chr1_113719092_-	intronic
CAediting_89686	chr1_113719093_-	intronic
CAediting_89687	chr1_113719097_-	intronic
CAediting_89688	chr1_113719098_-	intronic
CAediting_89689	chr1_113719112_-	intronic
CAediting_89690	chr1_113719138_-	intronic
CAediting_89691	chr1_113719139_-	intronic
CAediting_89692	chr1_113719161_-	intronic
CAediting_89693	chr1_113719313_-	intronic
CAediting_89694	chr1_113721042_-	intronic
CAediting_89695	chr1_113721061_-	intronic
CAediting_89696	chr1_113721889_-	intronic
CAediting_89697	chr1_113721890_-	intronic
CAediting_89698	chr1_113722710_-	intronic
CAediting_89699	chr1_113723220_-	intronic
CAediting_89700	chr1_113723238_-	intronic
CAediting_89701	chr1_113723246_-	intronic
CAediting_89702	chr1_113723263_-	intronic
CAediting_89703	chr1_113723267_-	intronic
CAediting_89704	chr1_113723274_-	intronic
CAediting_89705	chr1_113723275_-	intronic
CAediting_89706	chr1_113723283_-	intronic
CAediting_89707	chr1_113723289_-	intronic
CAediting_89708	chr1_113723292_-	intronic
CAediting_89709	chr1_113723315_-	intronic
CAediting_89710	chr1_113723316_-	intronic
CAediting_89711	chr1_113723322_-	intronic
CAediting_89712	chr1_113723348_-	intronic
CAediting_89713	chr1_113723351_-	intronic
CAediting_89714	chr1_113723354_-	intronic
CAediting_89715	chr1_113723356_-	intronic
CAediting_89716	chr1_113723381_-	intronic
CAediting_89717	chr1_113724374_-	intronic
CAediting_89718	chr1_113724395_-	intronic
CAediting_89719	chr1_113724458_-	intronic
CAediting_89720	chr1_113724459_-	intronic
CAediting_89721	chr1_113724464_-	intronic
CAediting_89722	chr1_113724484_-	intronic
CAediting_89723	chr1_113725798_-	ncRNA_exonic
CAediting_89724	chr1_113725891_-	ncRNA_exonic
CAediting_89725	chr1_113732313_-	ncRNA_intronic
CAediting_89726	chr1_113732928_-	ncRNA_intronic
CAediting_89727	chr1_113732975_-	ncRNA_intronic
CAediting_89728	chr1_113732986_-	ncRNA_intronic
CAediting_89729	chr1_113732989_-	ncRNA_intronic
CAediting_89730	chr1_113732994_-	ncRNA_intronic
CAediting_89731	chr1_113733012_-	ncRNA_intronic
CAediting_89732	chr1_113733021_-	ncRNA_intronic
CAediting_89733	chr1_113733035_-	ncRNA_intronic
CAediting_89734	chr1_113733058_-	ncRNA_intronic
CAediting_89735	chr1_113733104_-	ncRNA_intronic
CAediting_89736	chr1_113733108_-	ncRNA_intronic
CAediting_89737	chr1_113733157_-	ncRNA_intronic
CAediting_89738	chr1_113733160_-	ncRNA_intronic
CAediting_89739	chr1_113733175_-	ncRNA_intronic
CAediting_89740	chr1_113734252_-	ncRNA_intronic
CAediting_89741	chr1_113737716_-	ncRNA_intronic
CAediting_89742	chr1_113737723_-	ncRNA_intronic
CAediting_89743	chr1_113739126_-	intronic
CAediting_89744	chr1_113740813_-	intronic
CAediting_89745	chr1_113740859_-	intronic
CAediting_89746	chr1_113740919_-	intronic
CAediting_89747	chr1_113740948_-	intronic
CAediting_89748	chr1_113740949_-	intronic
CAediting_89749	chr1_113741000_-	intronic
CAediting_89750	chr1_113743014_-	intronic
CAediting_89751	chr1_113743041_-	intronic
CAediting_89752	chr1_113743046_-	intronic
CAediting_89753	chr1_113743072_-	intronic
CAediting_89754	chr1_113744705_-	intronic
CAediting_89755	chr1_113744706_-	intronic
CAediting_89756	chr1_113744715_-	intronic
CAediting_89757	chr1_113744733_-	intronic
CAediting_89758	chr1_113744760_-	intronic
CAediting_89759	chr1_113744773_-	intronic
CAediting_89760	chr1_113744779_-	intronic
CAediting_89761	chr1_113744799_-	intronic
CAediting_89762	chr1_113744800_-	intronic
CAediting_89763	chr1_113744827_-	intronic
CAediting_89764	chr1_113744837_-	intronic
CAediting_89765	chr1_113744849_-	intronic
CAediting_89766	chr1_113744866_-	intronic
CAediting_89767	chr1_113744918_-	intronic
CAediting_89768	chr1_113744927_-	intronic
CAediting_89769	chr1_113744941_-	intronic
CAediting_89770	chr1_113744945_-	intronic
CAediting_89771	chr1_113748008_-	intronic
CAediting_89772	chr1_113748012_-	intronic
CAediting_89773	chr1_113748025_-	intronic
CAediting_89774	chr1_113748061_-	intronic
CAediting_89775	chr1_113748075_-	intronic
CAediting_89776	chr1_113748086_-	intronic
CAediting_89777	chr1_113748093_-	intronic
CAediting_89778	chr1_113748116_-	intronic
CAediting_89779	chr1_113748132_-	intronic
CAediting_89780	chr1_113748142_-	intronic
CAediting_89781	chr1_113748147_-	intronic
CAediting_89782	chr1_113748154_-	intronic
CAediting_89783	chr1_113748167_-	intronic
CAediting_89784	chr1_113748183_-	intronic
CAediting_89785	chr1_113748224_-	intronic
CAediting_89786	chr1_113748235_-	intronic
CAediting_89787	chr1_113748251_-	intronic
CAediting_89788	chr1_113748252_-	intronic
CAediting_89789	chr1_113748260_-	intronic
CAediting_89790	chr1_113748568_-	intronic
CAediting_89791	chr1_113748570_-	intronic
CAediting_89792	chr1_113748582_-	intronic
CAediting_89793	chr1_113748617_-	intronic
CAediting_89794	chr1_113748623_-	intronic
CAediting_89795	chr1_113748632_-	intronic
CAediting_89796	chr1_113748655_-	intronic
CAediting_89797	chr1_113748658_-	intronic
CAediting_89798	chr1_113748662_-	intronic
CAediting_89799	chr1_113748672_-	intronic
CAediting_89800	chr1_113748698_-	intronic
CAediting_89801	chr1_113748711_-	intronic
CAediting_89802	chr1_113748712_-	intronic
CAediting_89803	chr1_113748714_-	intronic
CAediting_89804	chr1_113748715_-	intronic
CAediting_89805	chr1_113748718_-	intronic
CAediting_89806	chr1_113748754_-	intronic
CAediting_89807	chr1_113748755_-	intronic
CAediting_89808	chr1_113748760_-	intronic
CAediting_89809	chr1_113748804_-	intronic
CAediting_89810	chr1_113748813_-	intronic
CAediting_89811	chr1_113748821_-	intronic
CAediting_89812	chr1_113750262_-	ncRNA_intronic
CAediting_89813	chr1_113750996_-	ncRNA_intronic
CAediting_89814	chr1_113750997_-	ncRNA_intronic
CAediting_89815	chr1_113751003_-	ncRNA_intronic
CAediting_89816	chr1_113751018_-	ncRNA_intronic
CAediting_89817	chr1_113752497_-	ncRNA_intronic
CAediting_89818	chr1_113753517_-	ncRNA_intronic
CAediting_89819	chr1_113753525_-	ncRNA_intronic
CAediting_89820	chr1_113753552_-	ncRNA_intronic
CAediting_89821	chr1_113753556_-	ncRNA_intronic
CAediting_89822	chr1_113753566_-	ncRNA_intronic
CAediting_89823	chr1_113753647_-	ncRNA_intronic
CAediting_89824	chr1_113753870_-	ncRNA_intronic
CAediting_89825	chr1_113753874_-	ncRNA_intronic
CAediting_89826	chr1_113754194_-	ncRNA_intronic
CAediting_89827	chr1_113754256_-	ncRNA_intronic
CAediting_89828	chr1_113754316_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_89636	chr1_113702583_-	SINE	Alu	AluJr
CAediting_89637	chr1_113702584_-	SINE	Alu	AluJr
CAediting_89638	chr1_113702586_-	SINE	Alu	AluJr
CAediting_89639	chr1_113703580_-	SINE	Alu	FLAM_C
CAediting_89640	chr1_113709037_-	SINE	Alu	AluJb
CAediting_89641	chr1_113715398_-	SINE	Alu	AluJb
CAediting_89642	chr1_113715445_-	SINE	Alu	AluJb
CAediting_89643	chr1_113715484_-	SINE	Alu	AluJb
CAediting_89644	chr1_113715490_-	SINE	Alu	AluJb
CAediting_89645	chr1_113715491_-	SINE	Alu	AluJb
CAediting_89646	chr1_113715536_-	SINE	Alu	AluJb
CAediting_89647	chr1_113715565_-	SINE	Alu	AluJb
CAediting_89648	chr1_113715566_-	SINE	Alu	AluJb
CAediting_89649	chr1_113715572_-	SINE	Alu	AluJb
CAediting_89650	chr1_113716398_-	SINE	Alu	AluJr
CAediting_89651	chr1_113716410_-	SINE	Alu	AluJr
CAediting_89652	chr1_113716411_-	SINE	Alu	AluJr
CAediting_89653	chr1_113716417_-	SINE	Alu	AluJr
CAediting_89654	chr1_113716421_-	SINE	Alu	AluJr
CAediting_89655	chr1_113716424_-	SINE	Alu	AluJr
CAediting_89656	chr1_113716437_-	SINE	Alu	AluJr
CAediting_89657	chr1_113716442_-	SINE	Alu	AluJr
CAediting_89658	chr1_113716452_-	SINE	Alu	AluJr
CAediting_89659	chr1_113716453_-	SINE	Alu	AluJr
CAediting_89660	chr1_113716455_-	SINE	Alu	AluJr
CAediting_89661	chr1_113716456_-	SINE	Alu	AluJr
CAediting_89662	chr1_113716458_-	SINE	Alu	AluJr
CAediting_89663	chr1_113716460_-	SINE	Alu	AluJr
CAediting_89664	chr1_113716466_-	SINE	Alu	AluJr
CAediting_89665	chr1_113716473_-	SINE	Alu	AluJr
CAediting_89666	chr1_113716477_-	SINE	Alu	AluJr
CAediting_89667	chr1_113716495_-	SINE	Alu	AluJr
CAediting_89668	chr1_113716509_-	SINE	Alu	AluJr
CAediting_89669	chr1_113716513_-	SINE	Alu	AluJr
CAediting_89670	chr1_113716519_-	SINE	Alu	AluJr
CAediting_89671	chr1_113716527_-	SINE	Alu	AluJr
CAediting_89672	chr1_113716528_-	SINE	Alu	AluJr
CAediting_89673	chr1_113716531_-	SINE	Alu	AluJr
CAediting_89674	chr1_113716544_-	SINE	Alu	AluJr
CAediting_89675	chr1_113716548_-	SINE	Alu	AluJr
CAediting_89676	chr1_113716553_-	SINE	Alu	AluJr
CAediting_89677	chr1_113716569_-	SINE	Alu	AluJr
CAediting_89678	chr1_113716577_-	SINE	Alu	AluJr
CAediting_89679	chr1_113716593_-	SINE	Alu	AluJr
CAediting_89680	chr1_113716623_-	SINE	Alu	AluJr
CAediting_89681	chr1_113716625_-	SINE	Alu	AluJr
CAediting_89682	chr1_113719015_-	SINE	Alu	AluSx1
CAediting_89683	chr1_113719066_-	SINE	Alu	AluSx1
CAediting_89684	chr1_113719073_-	SINE	Alu	AluSx1
CAediting_89685	chr1_113719092_-	SINE	Alu	AluSx1
CAediting_89686	chr1_113719093_-	SINE	Alu	AluSx1
CAediting_89687	chr1_113719097_-	SINE	Alu	AluSx1
CAediting_89688	chr1_113719098_-	SINE	Alu	AluSx1
CAediting_89689	chr1_113719112_-	SINE	Alu	AluSx1
CAediting_89690	chr1_113719138_-	SINE	Alu	AluSx1
CAediting_89691	chr1_113719139_-	SINE	Alu	AluSx1
CAediting_89692	chr1_113719161_-	SINE	Alu	AluSx1
CAediting_89693	chr1_113719313_-	LTR	ERVL-MaLR	THE1A-int
CAediting_89694	chr1_113721042_-	SINE	Alu	AluSz6
CAediting_89695	chr1_113721061_-	SINE	Alu	AluSz6
CAediting_89696	chr1_113721889_-	SINE	Alu	AluY
CAediting_89697	chr1_113721890_-	SINE	Alu	AluY
CAediting_89698	chr1_113722710_-	SINE	Alu	AluSx1
CAediting_89699	chr1_113723220_-	SINE	Alu	AluSx1
CAediting_89700	chr1_113723238_-	SINE	Alu	AluSx1
CAediting_89701	chr1_113723246_-	SINE	Alu	AluSx1
CAediting_89702	chr1_113723263_-	SINE	Alu	AluSx1
CAediting_89703	chr1_113723267_-	SINE	Alu	AluSx1
CAediting_89704	chr1_113723274_-	SINE	Alu	AluSx1
CAediting_89705	chr1_113723275_-	SINE	Alu	AluSx1
CAediting_89706	chr1_113723283_-	SINE	Alu	AluSx1
CAediting_89707	chr1_113723289_-	SINE	Alu	AluSx1
CAediting_89708	chr1_113723292_-	SINE	Alu	AluSx1
CAediting_89709	chr1_113723315_-	SINE	Alu	AluSx1
CAediting_89710	chr1_113723316_-	SINE	Alu	AluSx1
CAediting_89711	chr1_113723322_-	SINE	Alu	AluSx1
CAediting_89712	chr1_113723348_-	SINE	Alu	AluSx1
CAediting_89713	chr1_113723351_-	SINE	Alu	AluSx1
CAediting_89714	chr1_113723354_-	SINE	Alu	AluSx1
CAediting_89715	chr1_113723356_-	SINE	Alu	AluSx1
CAediting_89716	chr1_113723381_-	SINE	Alu	AluSx1
CAediting_89717	chr1_113724374_-	SINE	Alu	AluSx1
CAediting_89718	chr1_113724395_-	SINE	Alu	AluSx1
CAediting_89719	chr1_113724458_-	SINE	Alu	AluSx1
CAediting_89720	chr1_113724459_-	SINE	Alu	AluSx1
CAediting_89721	chr1_113724464_-	SINE	Alu	AluSx1
CAediting_89722	chr1_113724484_-	SINE	Alu	AluSx1
CAediting_89723	chr1_113725798_-	SINE	Alu	AluSq2
CAediting_89724	chr1_113725891_-	SINE	Alu	AluSq2
CAediting_89725	chr1_113732313_-	SINE	Alu	AluSg
CAediting_89726	chr1_113732928_-	SINE	Alu	AluJr
CAediting_89727	chr1_113732975_-	SINE	Alu	AluJr
CAediting_89728	chr1_113732986_-	SINE	Alu	AluJr
CAediting_89729	chr1_113732989_-	SINE	Alu	AluJr
CAediting_89730	chr1_113732994_-	SINE	Alu	AluJr
CAediting_89731	chr1_113733012_-	SINE	Alu	AluJr
CAediting_89732	chr1_113733021_-	SINE	Alu	AluJr
CAediting_89733	chr1_113733035_-	SINE	Alu	AluJr
CAediting_89734	chr1_113733058_-	SINE	Alu	AluJr
CAediting_89735	chr1_113733104_-	SINE	Alu	AluJr
CAediting_89736	chr1_113733108_-	SINE	Alu	AluJr
CAediting_89737	chr1_113733157_-	SINE	Alu	AluJr
CAediting_89738	chr1_113733160_-	SINE	Alu	AluJr
CAediting_89739	chr1_113733175_-	SINE	Alu	AluJr
CAediting_89740	chr1_113734252_-	SINE	Alu	AluSx1
CAediting_89741	chr1_113737716_-	SINE	Alu	AluJb
CAediting_89742	chr1_113737723_-	SINE	Alu	AluJb
CAediting_89743	chr1_113739126_-	SINE	Alu	AluSq2
CAediting_89744	chr1_113740813_-	SINE	Alu	AluSx1
CAediting_89745	chr1_113740859_-	SINE	Alu	AluSx1
CAediting_89746	chr1_113740919_-	SINE	Alu	AluSx1
CAediting_89747	chr1_113740948_-	SINE	Alu	AluSx1
CAediting_89748	chr1_113740949_-	SINE	Alu	AluSx1
CAediting_89749	chr1_113741000_-	SINE	Alu	AluSx1
CAediting_89750	chr1_113743014_-	SINE	Alu	AluJo
CAediting_89751	chr1_113743041_-	SINE	Alu	AluJo
CAediting_89752	chr1_113743046_-	SINE	Alu	AluJo
CAediting_89753	chr1_113743072_-	SINE	Alu	AluJo
CAediting_89754	chr1_113744705_-	SINE	Alu	AluSx
CAediting_89755	chr1_113744706_-	SINE	Alu	AluSx
CAediting_89756	chr1_113744715_-	SINE	Alu	AluSx
CAediting_89757	chr1_113744733_-	SINE	Alu	AluSx
CAediting_89758	chr1_113744760_-	SINE	Alu	AluSx
CAediting_89759	chr1_113744773_-	SINE	Alu	AluSx
CAediting_89760	chr1_113744779_-	SINE	Alu	AluSx
CAediting_89761	chr1_113744799_-	SINE	Alu	AluSx
CAediting_89762	chr1_113744800_-	SINE	Alu	AluSx
CAediting_89763	chr1_113744827_-	SINE	Alu	AluSx
CAediting_89764	chr1_113744837_-	SINE	Alu	AluSx
CAediting_89765	chr1_113744849_-	SINE	Alu	AluSx
CAediting_89766	chr1_113744866_-	SINE	Alu	AluSx
CAediting_89767	chr1_113744918_-	SINE	Alu	AluSx
CAediting_89768	chr1_113744927_-	SINE	Alu	AluSx
CAediting_89769	chr1_113744941_-	SINE	Alu	AluSx
CAediting_89770	chr1_113744945_-	SINE	Alu	AluSx
CAediting_89771	chr1_113748008_-	SINE	Alu	AluJb
CAediting_89772	chr1_113748012_-	SINE	Alu	AluJb
CAediting_89773	chr1_113748025_-	SINE	Alu	AluJb
CAediting_89774	chr1_113748061_-	SINE	Alu	AluJb
CAediting_89775	chr1_113748075_-	SINE	Alu	AluJb
CAediting_89776	chr1_113748086_-	SINE	Alu	AluJb
CAediting_89777	chr1_113748093_-	SINE	Alu	AluJb
CAediting_89778	chr1_113748116_-	SINE	Alu	AluJb
CAediting_89779	chr1_113748132_-	SINE	Alu	AluJb
CAediting_89780	chr1_113748142_-	SINE	Alu	AluJb
CAediting_89781	chr1_113748147_-	SINE	Alu	AluJb
CAediting_89782	chr1_113748154_-	SINE	Alu	AluJb
CAediting_89783	chr1_113748167_-	SINE	Alu	AluJb
CAediting_89784	chr1_113748183_-	SINE	Alu	AluJb
CAediting_89785	chr1_113748224_-	SINE	Alu	AluJb
CAediting_89786	chr1_113748235_-	SINE	Alu	AluJb
CAediting_89787	chr1_113748251_-	SINE	Alu	AluJb
CAediting_89788	chr1_113748252_-	SINE	Alu	AluJb
CAediting_89789	chr1_113748260_-	SINE	Alu	AluJb
CAediting_89790	chr1_113748568_-	SINE	Alu	AluJb
CAediting_89791	chr1_113748570_-	SINE	Alu	AluJb
CAediting_89792	chr1_113748582_-	SINE	Alu	AluJb
CAediting_89793	chr1_113748617_-	SINE	Alu	AluJb
CAediting_89794	chr1_113748623_-	SINE	Alu	AluJb
CAediting_89795	chr1_113748632_-	SINE	Alu	AluJb
CAediting_89796	chr1_113748655_-	SINE	Alu	AluJb
CAediting_89797	chr1_113748658_-	SINE	Alu	AluJb
CAediting_89798	chr1_113748662_-	SINE	Alu	AluJb
CAediting_89799	chr1_113748672_-	SINE	Alu	AluJb
CAediting_89800	chr1_113748698_-	SINE	Alu	AluJb
CAediting_89801	chr1_113748711_-	SINE	Alu	AluJb
CAediting_89802	chr1_113748712_-	SINE	Alu	AluJb
CAediting_89803	chr1_113748714_-	SINE	Alu	AluJb
CAediting_89804	chr1_113748715_-	SINE	Alu	AluJb
CAediting_89805	chr1_113748718_-	SINE	Alu	AluJb
CAediting_89806	chr1_113748754_-	SINE	Alu	AluJb
CAediting_89807	chr1_113748755_-	SINE	Alu	AluJb
CAediting_89808	chr1_113748760_-	SINE	Alu	AluJb
CAediting_89809	chr1_113748804_-	SINE	Alu	AluJb
CAediting_89810	chr1_113748813_-	SINE	Alu	AluJb
CAediting_89811	chr1_113748821_-	SINE	Alu	AluJb
CAediting_89812	chr1_113750262_-	SINE	Alu	AluJr
CAediting_89813	chr1_113750996_-	SINE	Alu	AluJo
CAediting_89814	chr1_113750997_-	SINE	Alu	AluJo
CAediting_89815	chr1_113751003_-	SINE	Alu	AluJo
CAediting_89816	chr1_113751018_-	SINE	Alu	AluJo
CAediting_89817	chr1_113752497_-	SINE	Alu	AluY
CAediting_89818	chr1_113753517_-	SINE	Alu	AluSq2
CAediting_89819	chr1_113753525_-	SINE	Alu	AluSq2
CAediting_89820	chr1_113753552_-	SINE	Alu	AluSq2
CAediting_89821	chr1_113753556_-	SINE	Alu	AluSq2
CAediting_89822	chr1_113753566_-	SINE	Alu	AluSq2
CAediting_89823	chr1_113753647_-	SINE	Alu	AluSq2
CAediting_89824	chr1_113753870_-	SINE	Alu	AluJr
CAediting_89825	chr1_113753874_-	SINE	Alu	AluJr
CAediting_89826	chr1_113754194_-	SINE	Alu	AluJr
CAediting_89827	chr1_113754256_-	SINE	Alu	AluJr
CAediting_89828	chr1_113754316_-	SINE	Alu	AluJr

Top

RNA A-to-I editing events in the alternative splicing sites for PHTF1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000116793.14.PHTF1.

Correlation between RNA A-to-I editing and PSI for ENSG00000116793.14.PHTF1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for PHTF1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for PHTF1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for PHTF1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_117844	chr1_162342605_+	ENSG00000116793.14	ENST00000412670	hsa-miR-556-3p	113705781	113705788	8mer-1a	113705781	113705805	150	-12.99

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for PHTF1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000472612.4	processed_transcript
ENST00000486855.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_89723	ENST00000472612.4	chr1_113725798_-	-227.70	-227.60	-227.60
CAediting_89724	ENST00000472612.4	chr1_113725891_-	-227.60	-227.60	-227.60
CAediting_89723	ENST00000486855.1	chr1_113725798_-	-155.90	-155.20	-157.20
CAediting_89724	ENST00000486855.1	chr1_113725891_-	-157.50	-155.20	-157.20

Top

Relation with ADAR for PHTF1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_89651	chr1_113716410_-	0.00605231659162965	0.297152261609488	.	.	.	.

Top

Relation with cancer stages for PHTF1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
STAD	pathologic_stage	CAediting_89660	chr1_113716455_-	0.00400647402131617	0.230632252370198

Top

Relation with survival for PHTF1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for PHTF1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for PHTF1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene