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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TNFSF13B (CAeditome ID:10673) |
Gene summary for TNFSF13B |
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Gene information | Gene symbol | TNFSF13B | Gene ID | 10673 |
Gene name | TNF superfamily member 13b | |
Synonyms | BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 | |
Cytomap | 13q33.3 | |
Type of gene | protein-coding | |
Description | tumor necrosis factor ligand superfamily member 13BApoL related ligand TALL-1B-cell-activating factorB-lymphocyte stimulatorDelta4 BAFFTNF and ApoL-related leukocyte expressed ligand 1TNF homolog that activates apoptosisdelta BAFFdendritic cell-de | |
Modification date | 20210518 | |
UniProtAcc | Q9Y275 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TNFSF13B | GO:0005737 | Tumor necrosis factor ligand superfamily member 13B | 19828625 |
TNFSF13B | GO:0005886 | Tumor necrosis factor ligand superfamily member 13B | 0000052 |
TNFSF13B | GO:0005925 | Tumor necrosis factor ligand superfamily member 13B | 0000052 |
TNFSF13B | GO:0043231 | Tumor necrosis factor ligand superfamily member 13B | 0000052 |
TNFSF13B | GO:0048471 | Tumor necrosis factor ligand superfamily member 13B | 19828625 |
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RNA A-to-I events for TNFSF13B |
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CAediting_972809(108251697, +), CAediting_972810(108251701, +), CAediting_972811(108251751, +), CAediting_972812(108252078, +), CAediting_972813(108252118, +), CAediting_972814(108252152, +), CAediting_972815(108258321, +), CAediting_972816(108258338, +), CAediting_972817(108258342, +), CAediting_972818(108258343, +), CAediting_972819(108258344, +), CAediting_972820(108258351, +), CAediting_972821(108258357, +), CAediting_972822(108258380, +), CAediting_972823(108258404, +), CAediting_972824(108258405, +), CAediting_972825(108258895, +), CAediting_972826(108264551, +), CAediting_972827(108264554, +), CAediting_972828(108264582, +), CAediting_972829(108264583, +), CAediting_972830(108264584, +), CAediting_972831(108264624, +), CAediting_972832(108264625, +), CAediting_972833(108264630, +), CAediting_972834(108264740, +), CAediting_972835(108264766, +), CAediting_972836(108265443, +), CAediting_972837(108265462, +), CAediting_972838(108265464, +), CAediting_972839(108265469, +), CAediting_972840(108294249, +), CAediting_972841(108295231, +), CAediting_972842(108295300, +), CAediting_972843(108295304, +), CAediting_972844(108297501, +), CAediting_972845(108297702, +), CAediting_972846(108297710, +), CAediting_972847(108297717, +), CAediting_972848(108297756, +), CAediting_972849(108297761, +), CAediting_972850(108298165, +), CAediting_972851(108298222, +), CAediting_972852(108298229, +), CAediting_972853(108298248, +), CAediting_972854(108298341, +), CAediting_972855(108298362, +), CAediting_972856(108298449, +), CAediting_972857(108298450, +), CAediting_972858(108298456, +), CAediting_972859(108298472, +), CAediting_972860(108298708, +), CAediting_972861(108298795, +), CAediting_972862(108298860, +), CAediting_972863(108303584, +), CAediting_972864(108303586, +), |
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RNA editing positional annotations for TNFSF13B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_972864 | chr13_108303586_+ | nonsynonymous SNV | ENST00000375887.7 | c.A727G | p.N243D | D | D | D |
CAediting_972864 | chr13_108303586_+ | nonsynonymous SNV | ENST00000430559.4 | c.A670G | p.N224D | D | D | D |
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CAeditome ID | Position | Variant type |
CAediting_972809 | chr13_108251697_+ | ncRNA_intronic |
CAediting_972810 | chr13_108251701_+ | ncRNA_intronic |
CAediting_972811 | chr13_108251751_+ | ncRNA_intronic |
CAediting_972812 | chr13_108252078_+ | ncRNA_intronic |
CAediting_972813 | chr13_108252118_+ | ncRNA_intronic |
CAediting_972814 | chr13_108252152_+ | ncRNA_intronic |
CAediting_972815 | chr13_108258321_+ | ncRNA_intronic |
CAediting_972816 | chr13_108258338_+ | ncRNA_intronic |
CAediting_972817 | chr13_108258342_+ | ncRNA_intronic |
CAediting_972818 | chr13_108258343_+ | ncRNA_intronic |
CAediting_972819 | chr13_108258344_+ | ncRNA_intronic |
CAediting_972820 | chr13_108258351_+ | ncRNA_intronic |
CAediting_972821 | chr13_108258357_+ | ncRNA_intronic |
CAediting_972822 | chr13_108258380_+ | ncRNA_intronic |
CAediting_972823 | chr13_108258404_+ | ncRNA_intronic |
CAediting_972824 | chr13_108258405_+ | ncRNA_intronic |
CAediting_972825 | chr13_108258895_+ | ncRNA_intronic |
CAediting_972826 | chr13_108264551_+ | ncRNA_intronic |
CAediting_972827 | chr13_108264554_+ | ncRNA_intronic |
CAediting_972828 | chr13_108264582_+ | ncRNA_intronic |
CAediting_972829 | chr13_108264583_+ | ncRNA_intronic |
CAediting_972830 | chr13_108264584_+ | ncRNA_intronic |
CAediting_972831 | chr13_108264624_+ | ncRNA_intronic |
CAediting_972832 | chr13_108264625_+ | ncRNA_intronic |
CAediting_972833 | chr13_108264630_+ | ncRNA_intronic |
CAediting_972834 | chr13_108264740_+ | ncRNA_intronic |
CAediting_972835 | chr13_108264766_+ | ncRNA_intronic |
CAediting_972836 | chr13_108265443_+ | ncRNA_intronic |
CAediting_972837 | chr13_108265462_+ | ncRNA_intronic |
CAediting_972838 | chr13_108265464_+ | ncRNA_intronic |
CAediting_972839 | chr13_108265469_+ | ncRNA_intronic |
CAediting_972840 | chr13_108294249_+ | ncRNA_intronic |
CAediting_972841 | chr13_108295231_+ | ncRNA_intronic |
CAediting_972842 | chr13_108295300_+ | ncRNA_intronic |
CAediting_972843 | chr13_108295304_+ | ncRNA_intronic |
CAediting_972844 | chr13_108297501_+ | ncRNA_intronic |
CAediting_972845 | chr13_108297702_+ | ncRNA_intronic |
CAediting_972846 | chr13_108297710_+ | ncRNA_intronic |
CAediting_972847 | chr13_108297717_+ | ncRNA_intronic |
CAediting_972848 | chr13_108297756_+ | ncRNA_intronic |
CAediting_972849 | chr13_108297761_+ | ncRNA_intronic |
CAediting_972850 | chr13_108298165_+ | ncRNA_intronic |
CAediting_972851 | chr13_108298222_+ | ncRNA_intronic |
CAediting_972852 | chr13_108298229_+ | ncRNA_intronic |
CAediting_972853 | chr13_108298248_+ | ncRNA_intronic |
CAediting_972854 | chr13_108298341_+ | ncRNA_intronic |
CAediting_972855 | chr13_108298362_+ | ncRNA_intronic |
CAediting_972856 | chr13_108298449_+ | ncRNA_intronic |
CAediting_972857 | chr13_108298450_+ | ncRNA_intronic |
CAediting_972858 | chr13_108298456_+ | ncRNA_intronic |
CAediting_972859 | chr13_108298472_+ | ncRNA_intronic |
CAediting_972860 | chr13_108298708_+ | ncRNA_intronic |
CAediting_972861 | chr13_108298795_+ | ncRNA_intronic |
CAediting_972862 | chr13_108298860_+ | ncRNA_intronic |
CAediting_972863 | chr13_108303584_+ | exonic |
CAediting_972864 | chr13_108303586_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_972809 | chr13_108251697_+ | LINE | L1 | L1PA15 |
CAediting_972810 | chr13_108251701_+ | LINE | L1 | L1PA15 |
CAediting_972811 | chr13_108251751_+ | LINE | L1 | L1PA15 |
CAediting_972812 | chr13_108252078_+ | LINE | L1 | L1PA15 |
CAediting_972813 | chr13_108252118_+ | LINE | L1 | L1PA15 |
CAediting_972814 | chr13_108252152_+ | LINE | L1 | L1PA15 |
CAediting_972825 | chr13_108258895_+ | LINE | L1 | L1M5 |
CAediting_972826 | chr13_108264551_+ | LINE | L1 | L1MA4 |
CAediting_972827 | chr13_108264554_+ | LINE | L1 | L1MA4 |
CAediting_972828 | chr13_108264582_+ | LINE | L1 | L1MA4 |
CAediting_972829 | chr13_108264583_+ | LINE | L1 | L1MA4 |
CAediting_972830 | chr13_108264584_+ | LINE | L1 | L1MA4 |
CAediting_972831 | chr13_108264624_+ | LINE | L1 | L1MA4 |
CAediting_972832 | chr13_108264625_+ | LINE | L1 | L1MA4 |
CAediting_972833 | chr13_108264630_+ | LINE | L1 | L1MA4 |
CAediting_972834 | chr13_108264740_+ | LINE | L1 | L1MA4 |
CAediting_972835 | chr13_108264766_+ | LINE | L1 | L1MA4 |
CAediting_972836 | chr13_108265443_+ | LINE | L1 | L1MA6 |
CAediting_972837 | chr13_108265462_+ | LINE | L1 | L1MA6 |
CAediting_972838 | chr13_108265464_+ | LINE | L1 | L1MA6 |
CAediting_972839 | chr13_108265469_+ | LINE | L1 | L1MA6 |
CAediting_972840 | chr13_108294249_+ | SINE | Alu | AluSx1 |
CAediting_972841 | chr13_108295231_+ | SINE | Alu | AluSz |
CAediting_972842 | chr13_108295300_+ | SINE | Alu | AluSz |
CAediting_972843 | chr13_108295304_+ | SINE | Alu | AluSz |
CAediting_972844 | chr13_108297501_+ | LINE | L1 | L1MB5 |
CAediting_972845 | chr13_108297702_+ | LINE | L1 | L1MC1 |
CAediting_972846 | chr13_108297710_+ | LINE | L1 | L1MC1 |
CAediting_972847 | chr13_108297717_+ | LINE | L1 | L1MC1 |
CAediting_972848 | chr13_108297756_+ | LINE | L1 | L1MC1 |
CAediting_972849 | chr13_108297761_+ | LINE | L1 | L1MC1 |
CAediting_972850 | chr13_108298165_+ | LINE | L1 | L1MC1 |
CAediting_972851 | chr13_108298222_+ | LINE | L1 | L1MC1 |
CAediting_972852 | chr13_108298229_+ | LINE | L1 | L1MC1 |
CAediting_972853 | chr13_108298248_+ | LINE | L1 | L1MC1 |
CAediting_972854 | chr13_108298341_+ | LINE | L1 | L1M4 |
CAediting_972855 | chr13_108298362_+ | LINE | L1 | L1M4 |
CAediting_972856 | chr13_108298449_+ | LINE | L1 | L1M4 |
CAediting_972857 | chr13_108298450_+ | LINE | L1 | L1M4 |
CAediting_972858 | chr13_108298456_+ | LINE | L1 | L1M4 |
CAediting_972859 | chr13_108298472_+ | LINE | L1 | L1M4 |
CAediting_972860 | chr13_108298708_+ | SINE | Alu | AluSx4 |
CAediting_972861 | chr13_108298795_+ | SINE | Alu | AluSx4 |
CAediting_972862 | chr13_108298860_+ | SINE | Alu | AluSx4 |
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RNA A-to-I editing events in the alternative splicing sites for TNFSF13B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TNFSF13B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TNFSF13B |
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The effects of the RNA editing to the miRNA binding sites for TNFSF13B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_77128 | chr1_85133844_+ | ENSG00000102524.10 | ENST00000430559 | hsa-miR-4423-3p | 108307319 | 108307325 | 7mer-m8 | 108307306 | 108307326 | 140 | -12.9 |
CAediting_442554 | chr5_154685830_+ | ENSG00000102524.10 | ENST00000430559 | hsa-miR-1303 | 108307753 | 108307759 | 7mer-m8 | 108307739 | 108307760 | 150 | -10.25 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_228905 | chr2_188297554_+ | ENSG00000102524.10 | ENST00000430559 | hsa-miR-561-3p | 108307668 | 108307674 | 7mer-m8 | 108307651 | 108307675 | 147 | -7.86 |
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The effects of the RNA editing to the stability of the RNA structures for TNFSF13B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TNFSF13B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TNFSF13B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TNFSF13B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TNFSF13B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
TNFSF13B | Q9Y275 | DB08879 | Belimumab | Tumor necrosis factor ligand superfamily member 13B | BiotechDrug | approved |
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RelatedDiseases for TNFSF13B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TNFSF13B | C0525045 | Mood Disorders | 1 | PSYGENET |