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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CGRRF1 (CAeditome ID:10668) |
Gene summary for CGRRF1 |
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Gene information | Gene symbol | CGRRF1 | Gene ID | 10668 |
Gene name | cell growth regulator with ring finger domain 1 | |
Synonyms | CGR19|RNF197 | |
Cytomap | 14q22.2 | |
Type of gene | protein-coding | |
Description | cell growth regulator with RING finger domain protein 1RING finger protein 197cell growth regulatory gene 19 protein | |
Modification date | 20210518 | |
UniProtAcc | Q99675 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CGRRF1 | GO:0005654 | Cell growth regulator with RING finger domain protein 1 | 0000052 |
CGRRF1 | GO:0005783 | Cell growth regulator with RING finger domain protein 1 | 27485036 |
CGRRF1 | GO:0043231 | Cell growth regulator with RING finger domain protein 1 | 0000052 |
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RNA A-to-I events for CGRRF1 |
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CAediting_992467(54522987, +), CAediting_992468(54522991, +), CAediting_992469(54523029, +), CAediting_992470(54523045, +), CAediting_992471(54523047, +), CAediting_992472(54523165, +), CAediting_992473(54524991, +), |
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RNA editing positional annotations for CGRRF1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_992472 | chr14_54523165_+ | nonsynonymous SNV | ENST00000557317.1 | c.A260G | p.H87R | T | . | D |
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CAeditome ID | Position | Variant type |
CAediting_992467 | chr14_54522987_+ | ncRNA_intronic |
CAediting_992468 | chr14_54522991_+ | ncRNA_intronic |
CAediting_992469 | chr14_54523029_+ | ncRNA_intronic |
CAediting_992470 | chr14_54523045_+ | ncRNA_intronic |
CAediting_992471 | chr14_54523047_+ | ncRNA_intronic |
CAediting_992472 | chr14_54523165_+ | exonic |
CAediting_992473 | chr14_54524991_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_992467 | chr14_54522987_+ | SINE | Alu | AluSx |
CAediting_992468 | chr14_54522991_+ | SINE | Alu | AluSx |
CAediting_992469 | chr14_54523029_+ | SINE | Alu | AluSx |
CAediting_992470 | chr14_54523045_+ | SINE | Alu | AluSx |
CAediting_992471 | chr14_54523047_+ | SINE | Alu | AluSx |
CAediting_992472 | chr14_54523165_+ | SINE | Alu | AluSx |
CAediting_992473 | chr14_54524991_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for CGRRF1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CGRRF1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CGRRF1 |
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The effects of the RNA editing to the miRNA binding sites for CGRRF1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_524911 | chr7_5495852_- | ENSG00000100532.10 | ENST00000557755 | hsa-miR-589-3p | 54530187 | 54530193 | 7mer-m8 | 54530171 | 54530194 | 147 | -15.45 |
CAediting_77128 | chr1_85133844_+ | ENSG00000100532.10 | ENST00000556172 | hsa-miR-4423-3p | 54538295 | 54538302 | 8mer-1a | 54538280 | 54538302 | 144 | -12.47 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CGRRF1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CGRRF1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CGRRF1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CGRRF1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CGRRF1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CGRRF1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |