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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TRAPPC2B (CAeditome ID:10597) |
Gene summary for TRAPPC2B |
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Gene information | Gene symbol | TRAPPC2B | Gene ID | 10597 |
Gene name | trafficking protein particle complex subunit 2B | |
Synonyms | MIP-2A|SEDLP|SEDLP1|TRAPPC2P1 | |
Cytomap | 19q13.43 | |
Type of gene | protein-coding | |
Description | trafficking protein particle complex subunit 2BMBP-1 interacting protein-2Aspondyloepiphyseal dysplasia, late, pseudogenetrafficking protein particle complex 2 pseudogene 1trafficking protein particle complex 2B | |
Modification date | 20210518 | |
UniProtAcc | P0DI82 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TRAPPC2B | GO:0005654 | Trafficking protein particle complex subunit 2B | 0000052 |
TRAPPC2B | GO:0005783 | Trafficking protein particle complex subunit 2B | 0000052 |
TRAPPC2B | GO:0043231 | Trafficking protein particle complex subunit 2B | 0000052 |
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RNA A-to-I events for TRAPPC2B |
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CAediting_1392657(57364842, +), |
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RNA editing positional annotations for TRAPPC2B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1392657 | chr19_57364842_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for TRAPPC2B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAPPC2B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TRAPPC2B |
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The effects of the RNA editing to the miRNA binding sites for TRAPPC2B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for TRAPPC2B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TRAPPC2B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TRAPPC2B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TRAPPC2B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TRAPPC2B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRAPPC2B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |