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Editing gene: SEC23A (CAeditome ID:10484)

Gene summary for SEC23A

Gene summary

Gene information	Gene symbol	SEC23A
	Gene ID	10484
	Gene name	SEC23 homolog A, COPII coat complex component
	Synonyms	CLSD\|hSec23A
	Cytomap	14q21.1
	Type of gene	protein-coding
	Description	protein transport protein Sec23ASEC23-related protein ASec23 homolog A, coat complex II component
	Modification date	20210518
	UniProtAcc	Q15436
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SEC23A	GO:0008270	Protein transport protein Sec23A	18843296
SEC23A	GO:0090110	Protein transport protein Sec23A	17499046
SEC23A	GO:0090110	Protein transport protein Sec23A	18843296
SEC23A	GO:0005829	Protein transport protein Sec23A	8898360
SEC23A	GO:0019898	Protein transport protein Sec23A	8898360
SEC23A	GO:0070971	Protein transport protein Sec23A	28442536
SEC23A	GO:0070971	Protein transport protein Sec23A	8898360
SEC23A	GO:0030127	Protein transport protein Sec23A	17499046

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RNA A-to-I events for SEC23A

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000100934.13

RNA A-to-I editing events in Cancer.

CAediting_987177(39042068, -), CAediting_987178(39043190, -), CAediting_987179(39046209, -), CAediting_987180(39046218, -), CAediting_987181(39046224, -), CAediting_987182(39053915, -), CAediting_987183(39054018, -), CAediting_987184(39054031, -), CAediting_987185(39054082, -), CAediting_987186(39054163, -), CAediting_987187(39054253, -), CAediting_987188(39054595, -), CAediting_987189(39054723, -), CAediting_987190(39056351, -), CAediting_987191(39056370, -), CAediting_987192(39056379, -), CAediting_987193(39056980, -), CAediting_987194(39057024, -), CAediting_987195(39057070, -), CAediting_987196(39057079, -), CAediting_987197(39057096, -), CAediting_987198(39057097, -), CAediting_987199(39057102, -), CAediting_987200(39057458, -), CAediting_987201(39057617, -), CAediting_987202(39057662, -), CAediting_987203(39058348, -), CAediting_987204(39063740, -), CAediting_987205(39063749, -), CAediting_987206(39063752, -), CAediting_987207(39063762, -), CAediting_987208(39063803, -), CAediting_987209(39063807, -), CAediting_987210(39063815, -), CAediting_987211(39063829, -), CAediting_987212(39063832, -), CAediting_987213(39063861, -), CAediting_987214(39063872, -), CAediting_987215(39063874, -), CAediting_987216(39063884, -), CAediting_987217(39063886, -), CAediting_987218(39063888, -), CAediting_987219(39063939, -), CAediting_987220(39063958, -), CAediting_987221(39063963, -), CAediting_987222(39064800, -), CAediting_987223(39064826, -), CAediting_987224(39064835, -), CAediting_987225(39064852, -), CAediting_987226(39064853, -), CAediting_987227(39064871, -), CAediting_987228(39064872, -), CAediting_987229(39067713, -), CAediting_987230(39067763, -), CAediting_987231(39067773, -), CAediting_987232(39067779, -), CAediting_987233(39067782, -), CAediting_987234(39067799, -), CAediting_987235(39067808, -), CAediting_987236(39067814, -), CAediting_987237(39067833, -), CAediting_987238(39067845, -), CAediting_987239(39067852, -), CAediting_987240(39067866, -), CAediting_987241(39067882, -), CAediting_987242(39067888, -), CAediting_987243(39067942, -), CAediting_987244(39067943, -), CAediting_987245(39070782, -), CAediting_987246(39070830, -), CAediting_987247(39071361, -), CAediting_987248(39071473, -), CAediting_987249(39071608, -), CAediting_987250(39071683, -), CAediting_987251(39071700, -), CAediting_987252(39071743, -), CAediting_987253(39071755, -), CAediting_987254(39071759, -), CAediting_987255(39071782, -), CAediting_987256(39071788, -), CAediting_987257(39071842, -), CAediting_987258(39071988, -), CAediting_987259(39071989, -), CAediting_987260(39072016, -), CAediting_987261(39072068, -), CAediting_987262(39072071, -), CAediting_987263(39072110, -), CAediting_987264(39072120, -), CAediting_987265(39072137, -), CAediting_987266(39072149, -), CAediting_987267(39072150, -), CAediting_987268(39072684, -), CAediting_987269(39072690, -), CAediting_987270(39072692, -), CAediting_987271(39072714, -), CAediting_987272(39072728, -), CAediting_987273(39072757, -), CAediting_987274(39072762, -), CAediting_987275(39072780, -), CAediting_987276(39073395, -), CAediting_987277(39073417, -), CAediting_987278(39073430, -), CAediting_987279(39073431, -), CAediting_987280(39073441, -), CAediting_987281(39073457, -), CAediting_987282(39073476, -), CAediting_987283(39073488, -), CAediting_987284(39073489, -), CAediting_987285(39073497, -), CAediting_987286(39073498, -), CAediting_987287(39073510, -), CAediting_987288(39073513, -), CAediting_987289(39073521, -), CAediting_987290(39073549, -), CAediting_987291(39073552, -), CAediting_987292(39073561, -), CAediting_987293(39073566, -), CAediting_987294(39073567, -), CAediting_987295(39073662, -), CAediting_987296(39073672, -), CAediting_987297(39073677, -), CAediting_987298(39073682, -), CAediting_987299(39073695, -), CAediting_987300(39073706, -), CAediting_987301(39073707, -), CAediting_987302(39073725, -), CAediting_987303(39073742, -), CAediting_987304(39073747, -), CAediting_987305(39073748, -), CAediting_987306(39073754, -), CAediting_987307(39073774, -), CAediting_987308(39073787, -), CAediting_987309(39073789, -), CAediting_987310(39073792, -), CAediting_987311(39073803, -), CAediting_987312(39073805, -), CAediting_987313(39073813, -), CAediting_987314(39073823, -), CAediting_987315(39073829, -), CAediting_987316(39073850, -), CAediting_987317(39073880, -), CAediting_987318(39075071, -), CAediting_987319(39076517, -), CAediting_987320(39077528, -), CAediting_987321(39077733, -), CAediting_987322(39077795, -), CAediting_987323(39077811, -), CAediting_987324(39081002, -), CAediting_987325(39083648, -), CAediting_987326(39092894, -), CAediting_987327(39093652, -), CAediting_987328(39099255, -), CAediting_987329(39099256, -), CAediting_987330(39099287, -), CAediting_987331(39099291, -), CAediting_987332(39099297, -), CAediting_987333(39099323, -), CAediting_987334(39099328, -), CAediting_987335(39099336, -), CAediting_987336(39099338, -), CAediting_987337(39099342, -), CAediting_987338(39099353, -), CAediting_987339(39099354, -), CAediting_987340(39099387, -), CAediting_987341(39099395, -), CAediting_987342(39099430, -), CAediting_987343(39099431, -), CAediting_987344(39099439, -),

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RNA editing positional annotations for SEC23A using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_987177	chr14_39042068_-	intronic
CAediting_987178	chr14_39043190_-	intronic
CAediting_987179	chr14_39046209_-	intronic
CAediting_987180	chr14_39046218_-	intronic
CAediting_987181	chr14_39046224_-	intronic
CAediting_987182	chr14_39053915_-	intronic
CAediting_987183	chr14_39054018_-	intronic
CAediting_987184	chr14_39054031_-	intronic
CAediting_987185	chr14_39054082_-	intronic
CAediting_987186	chr14_39054163_-	intronic
CAediting_987187	chr14_39054253_-	intronic
CAediting_987188	chr14_39054595_-	intronic
CAediting_987189	chr14_39054723_-	intronic
CAediting_987190	chr14_39056351_-	intronic
CAediting_987191	chr14_39056370_-	intronic
CAediting_987192	chr14_39056379_-	intronic
CAediting_987193	chr14_39056980_-	intronic
CAediting_987194	chr14_39057024_-	intronic
CAediting_987195	chr14_39057070_-	intronic
CAediting_987196	chr14_39057079_-	intronic
CAediting_987197	chr14_39057096_-	intronic
CAediting_987198	chr14_39057097_-	intronic
CAediting_987199	chr14_39057102_-	intronic
CAediting_987200	chr14_39057458_-	intronic
CAediting_987201	chr14_39057617_-	intronic
CAediting_987202	chr14_39057662_-	intronic
CAediting_987203	chr14_39058348_-	intronic
CAediting_987204	chr14_39063740_-	intronic
CAediting_987205	chr14_39063749_-	intronic
CAediting_987206	chr14_39063752_-	intronic
CAediting_987207	chr14_39063762_-	intronic
CAediting_987208	chr14_39063803_-	intronic
CAediting_987209	chr14_39063807_-	intronic
CAediting_987210	chr14_39063815_-	intronic
CAediting_987211	chr14_39063829_-	intronic
CAediting_987212	chr14_39063832_-	intronic
CAediting_987213	chr14_39063861_-	intronic
CAediting_987214	chr14_39063872_-	intronic
CAediting_987215	chr14_39063874_-	intronic
CAediting_987216	chr14_39063884_-	intronic
CAediting_987217	chr14_39063886_-	intronic
CAediting_987218	chr14_39063888_-	intronic
CAediting_987219	chr14_39063939_-	intronic
CAediting_987220	chr14_39063958_-	intronic
CAediting_987221	chr14_39063963_-	intronic
CAediting_987222	chr14_39064800_-	ncRNA_exonic
CAediting_987223	chr14_39064826_-	ncRNA_exonic
CAediting_987224	chr14_39064835_-	ncRNA_exonic
CAediting_987225	chr14_39064852_-	ncRNA_exonic
CAediting_987226	chr14_39064853_-	ncRNA_exonic
CAediting_987227	chr14_39064871_-	ncRNA_exonic
CAediting_987228	chr14_39064872_-	ncRNA_exonic
CAediting_987229	chr14_39067713_-	intronic
CAediting_987230	chr14_39067763_-	intronic
CAediting_987231	chr14_39067773_-	intronic
CAediting_987232	chr14_39067779_-	intronic
CAediting_987233	chr14_39067782_-	intronic
CAediting_987234	chr14_39067799_-	intronic
CAediting_987235	chr14_39067808_-	intronic
CAediting_987236	chr14_39067814_-	intronic
CAediting_987237	chr14_39067833_-	intronic
CAediting_987238	chr14_39067845_-	intronic
CAediting_987239	chr14_39067852_-	intronic
CAediting_987240	chr14_39067866_-	intronic
CAediting_987241	chr14_39067882_-	intronic
CAediting_987242	chr14_39067888_-	intronic
CAediting_987243	chr14_39067942_-	intronic
CAediting_987244	chr14_39067943_-	intronic
CAediting_987245	chr14_39070782_-	intronic
CAediting_987246	chr14_39070830_-	intronic
CAediting_987247	chr14_39071361_-	intronic
CAediting_987248	chr14_39071473_-	intronic
CAediting_987249	chr14_39071608_-	intronic
CAediting_987250	chr14_39071683_-	intronic
CAediting_987251	chr14_39071700_-	intronic
CAediting_987252	chr14_39071743_-	intronic
CAediting_987253	chr14_39071755_-	intronic
CAediting_987254	chr14_39071759_-	intronic
CAediting_987255	chr14_39071782_-	intronic
CAediting_987256	chr14_39071788_-	intronic
CAediting_987257	chr14_39071842_-	intronic
CAediting_987258	chr14_39071988_-	intronic
CAediting_987259	chr14_39071989_-	intronic
CAediting_987260	chr14_39072016_-	intronic
CAediting_987261	chr14_39072068_-	intronic
CAediting_987262	chr14_39072071_-	intronic
CAediting_987263	chr14_39072110_-	intronic
CAediting_987264	chr14_39072120_-	intronic
CAediting_987265	chr14_39072137_-	intronic
CAediting_987266	chr14_39072149_-	intronic
CAediting_987267	chr14_39072150_-	intronic
CAediting_987268	chr14_39072684_-	intronic
CAediting_987269	chr14_39072690_-	intronic
CAediting_987270	chr14_39072692_-	intronic
CAediting_987271	chr14_39072714_-	intronic
CAediting_987272	chr14_39072728_-	intronic
CAediting_987273	chr14_39072757_-	intronic
CAediting_987274	chr14_39072762_-	intronic
CAediting_987275	chr14_39072780_-	intronic
CAediting_987276	chr14_39073395_-	intronic
CAediting_987277	chr14_39073417_-	intronic
CAediting_987278	chr14_39073430_-	intronic
CAediting_987279	chr14_39073431_-	intronic
CAediting_987280	chr14_39073441_-	intronic
CAediting_987281	chr14_39073457_-	intronic
CAediting_987282	chr14_39073476_-	intronic
CAediting_987283	chr14_39073488_-	intronic
CAediting_987284	chr14_39073489_-	intronic
CAediting_987285	chr14_39073497_-	intronic
CAediting_987286	chr14_39073498_-	intronic
CAediting_987287	chr14_39073510_-	intronic
CAediting_987288	chr14_39073513_-	intronic
CAediting_987289	chr14_39073521_-	intronic
CAediting_987290	chr14_39073549_-	intronic
CAediting_987291	chr14_39073552_-	intronic
CAediting_987292	chr14_39073561_-	intronic
CAediting_987293	chr14_39073566_-	intronic
CAediting_987294	chr14_39073567_-	intronic
CAediting_987295	chr14_39073662_-	intronic
CAediting_987296	chr14_39073672_-	intronic
CAediting_987297	chr14_39073677_-	intronic
CAediting_987298	chr14_39073682_-	intronic
CAediting_987299	chr14_39073695_-	intronic
CAediting_987300	chr14_39073706_-	intronic
CAediting_987301	chr14_39073707_-	intronic
CAediting_987302	chr14_39073725_-	intronic
CAediting_987303	chr14_39073742_-	intronic
CAediting_987304	chr14_39073747_-	intronic
CAediting_987305	chr14_39073748_-	intronic
CAediting_987306	chr14_39073754_-	intronic
CAediting_987307	chr14_39073774_-	intronic
CAediting_987308	chr14_39073787_-	intronic
CAediting_987309	chr14_39073789_-	intronic
CAediting_987310	chr14_39073792_-	intronic
CAediting_987311	chr14_39073803_-	intronic
CAediting_987312	chr14_39073805_-	intronic
CAediting_987313	chr14_39073813_-	intronic
CAediting_987314	chr14_39073823_-	intronic
CAediting_987315	chr14_39073829_-	intronic
CAediting_987316	chr14_39073850_-	intronic
CAediting_987317	chr14_39073880_-	intronic
CAediting_987318	chr14_39075071_-	intronic
CAediting_987319	chr14_39076517_-	intronic
CAediting_987320	chr14_39077528_-	intronic
CAediting_987321	chr14_39077733_-	intronic
CAediting_987322	chr14_39077795_-	intronic
CAediting_987323	chr14_39077811_-	intronic
CAediting_987324	chr14_39081002_-	intronic
CAediting_987325	chr14_39083648_-	intronic
CAediting_987326	chr14_39092894_-	UTR3
CAediting_987327	chr14_39093652_-	intronic
CAediting_987328	chr14_39099255_-	intronic
CAediting_987329	chr14_39099256_-	intronic
CAediting_987330	chr14_39099287_-	intronic
CAediting_987331	chr14_39099291_-	intronic
CAediting_987332	chr14_39099297_-	intronic
CAediting_987333	chr14_39099323_-	intronic
CAediting_987334	chr14_39099328_-	intronic
CAediting_987335	chr14_39099336_-	intronic
CAediting_987336	chr14_39099338_-	intronic
CAediting_987337	chr14_39099342_-	intronic
CAediting_987338	chr14_39099353_-	intronic
CAediting_987339	chr14_39099354_-	intronic
CAediting_987340	chr14_39099387_-	intronic
CAediting_987341	chr14_39099395_-	intronic
CAediting_987342	chr14_39099430_-	intronic
CAediting_987343	chr14_39099431_-	intronic
CAediting_987344	chr14_39099439_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_987177	chr14_39042068_-	SINE	Alu	AluJo
CAediting_987178	chr14_39043190_-	SINE	Alu	AluJo
CAediting_987179	chr14_39046209_-	SINE	Alu	AluSx
CAediting_987180	chr14_39046218_-	SINE	Alu	AluSx
CAediting_987181	chr14_39046224_-	SINE	Alu	AluSx
CAediting_987182	chr14_39053915_-	SINE	Alu	AluJr4
CAediting_987183	chr14_39054018_-	SINE	Alu	AluJb
CAediting_987184	chr14_39054031_-	SINE	Alu	AluJb
CAediting_987185	chr14_39054082_-	SINE	Alu	AluJb
CAediting_987186	chr14_39054163_-	SINE	Alu	AluJb
CAediting_987187	chr14_39054253_-	SINE	Alu	AluJb
CAediting_987188	chr14_39054595_-	SINE	Alu	AluJr
CAediting_987189	chr14_39054723_-	SINE	Alu	AluJr
CAediting_987190	chr14_39056351_-	SINE	Alu	AluSz
CAediting_987191	chr14_39056370_-	SINE	Alu	AluSz
CAediting_987192	chr14_39056379_-	SINE	Alu	AluSz
CAediting_987193	chr14_39056980_-	SINE	Alu	FLAM_A
CAediting_987194	chr14_39057024_-	SINE	Alu	FLAM_A
CAediting_987195	chr14_39057070_-	SINE	Alu	AluSz
CAediting_987196	chr14_39057079_-	SINE	Alu	AluSz
CAediting_987197	chr14_39057096_-	SINE	Alu	AluSz
CAediting_987198	chr14_39057097_-	SINE	Alu	AluSz
CAediting_987199	chr14_39057102_-	SINE	Alu	AluSz
CAediting_987200	chr14_39057458_-	SINE	Alu	AluJr4
CAediting_987201	chr14_39057617_-	SINE	Alu	AluJr4
CAediting_987202	chr14_39057662_-	SINE	Alu	AluJr4
CAediting_987203	chr14_39058348_-	SINE	Alu	AluYb9
CAediting_987204	chr14_39063740_-	SINE	Alu	AluY
CAediting_987205	chr14_39063749_-	SINE	Alu	AluY
CAediting_987206	chr14_39063752_-	SINE	Alu	AluY
CAediting_987207	chr14_39063762_-	SINE	Alu	AluY
CAediting_987208	chr14_39063803_-	SINE	Alu	AluY
CAediting_987209	chr14_39063807_-	SINE	Alu	AluY
CAediting_987210	chr14_39063815_-	SINE	Alu	AluY
CAediting_987211	chr14_39063829_-	SINE	Alu	AluY
CAediting_987212	chr14_39063832_-	SINE	Alu	AluY
CAediting_987213	chr14_39063861_-	SINE	Alu	AluY
CAediting_987214	chr14_39063872_-	SINE	Alu	AluY
CAediting_987215	chr14_39063874_-	SINE	Alu	AluY
CAediting_987216	chr14_39063884_-	SINE	Alu	AluY
CAediting_987217	chr14_39063886_-	SINE	Alu	AluY
CAediting_987218	chr14_39063888_-	SINE	Alu	AluY
CAediting_987219	chr14_39063939_-	SINE	Alu	AluY
CAediting_987220	chr14_39063958_-	SINE	Alu	AluY
CAediting_987221	chr14_39063963_-	SINE	Alu	AluY
CAediting_987222	chr14_39064800_-	SINE	Alu	FLAM_C
CAediting_987223	chr14_39064826_-	SINE	Alu	FLAM_C
CAediting_987224	chr14_39064835_-	SINE	Alu	FLAM_C
CAediting_987225	chr14_39064852_-	SINE	Alu	FLAM_C
CAediting_987226	chr14_39064853_-	SINE	Alu	FLAM_C
CAediting_987227	chr14_39064871_-	SINE	Alu	FLAM_C
CAediting_987228	chr14_39064872_-	SINE	Alu	FLAM_C
CAediting_987229	chr14_39067713_-	SINE	Alu	AluJb
CAediting_987230	chr14_39067763_-	SINE	Alu	AluJb
CAediting_987231	chr14_39067773_-	SINE	Alu	AluJb
CAediting_987232	chr14_39067779_-	SINE	Alu	AluJb
CAediting_987233	chr14_39067782_-	SINE	Alu	AluJb
CAediting_987234	chr14_39067799_-	SINE	Alu	AluJb
CAediting_987235	chr14_39067808_-	SINE	Alu	AluJb
CAediting_987236	chr14_39067814_-	SINE	Alu	AluJb
CAediting_987237	chr14_39067833_-	SINE	Alu	AluJb
CAediting_987238	chr14_39067845_-	SINE	Alu	AluJb
CAediting_987239	chr14_39067852_-	SINE	Alu	AluJb
CAediting_987240	chr14_39067866_-	SINE	Alu	AluJb
CAediting_987241	chr14_39067882_-	SINE	Alu	AluJb
CAediting_987242	chr14_39067888_-	SINE	Alu	AluJb
CAediting_987243	chr14_39067942_-	SINE	Alu	AluJb
CAediting_987244	chr14_39067943_-	SINE	Alu	AluJb
CAediting_987245	chr14_39070782_-	SINE	Alu	AluSq
CAediting_987246	chr14_39070830_-	SINE	Alu	AluSq
CAediting_987247	chr14_39071361_-	SINE	Alu	AluSz6
CAediting_987248	chr14_39071473_-	SINE	Alu	AluSz6
CAediting_987249	chr14_39071608_-	SINE	Alu	AluSx3
CAediting_987250	chr14_39071683_-	SINE	Alu	AluSx3
CAediting_987251	chr14_39071700_-	SINE	Alu	AluSx3
CAediting_987252	chr14_39071743_-	SINE	Alu	AluSx3
CAediting_987253	chr14_39071755_-	SINE	Alu	AluSx3
CAediting_987254	chr14_39071759_-	SINE	Alu	AluSx3
CAediting_987255	chr14_39071782_-	SINE	Alu	AluSx3
CAediting_987256	chr14_39071788_-	SINE	Alu	AluSx3
CAediting_987257	chr14_39071842_-	SINE	Alu	AluSx3
CAediting_987258	chr14_39071988_-	SINE	Alu	AluSz
CAediting_987259	chr14_39071989_-	SINE	Alu	AluSz
CAediting_987260	chr14_39072016_-	SINE	Alu	AluSz
CAediting_987261	chr14_39072068_-	SINE	Alu	AluSz
CAediting_987262	chr14_39072071_-	SINE	Alu	AluSz
CAediting_987263	chr14_39072110_-	SINE	Alu	AluSz
CAediting_987264	chr14_39072120_-	SINE	Alu	AluSz
CAediting_987265	chr14_39072137_-	SINE	Alu	AluSz
CAediting_987266	chr14_39072149_-	SINE	Alu	AluSz
CAediting_987267	chr14_39072150_-	SINE	Alu	AluSz
CAediting_987268	chr14_39072684_-	SINE	Alu	AluJr
CAediting_987269	chr14_39072690_-	SINE	Alu	AluJr
CAediting_987270	chr14_39072692_-	SINE	Alu	AluJr
CAediting_987271	chr14_39072714_-	SINE	Alu	AluJr
CAediting_987272	chr14_39072728_-	SINE	Alu	AluJr
CAediting_987273	chr14_39072757_-	SINE	Alu	AluJr
CAediting_987274	chr14_39072762_-	SINE	Alu	AluJr
CAediting_987275	chr14_39072780_-	SINE	Alu	AluJr
CAediting_987276	chr14_39073395_-	SINE	Alu	AluSx
CAediting_987277	chr14_39073417_-	SINE	Alu	AluSx
CAediting_987278	chr14_39073430_-	SINE	Alu	AluSx
CAediting_987279	chr14_39073431_-	SINE	Alu	AluSx
CAediting_987280	chr14_39073441_-	SINE	Alu	AluSx
CAediting_987281	chr14_39073457_-	SINE	Alu	AluSx
CAediting_987282	chr14_39073476_-	SINE	Alu	AluSx
CAediting_987283	chr14_39073488_-	SINE	Alu	AluSx
CAediting_987284	chr14_39073489_-	SINE	Alu	AluSx
CAediting_987285	chr14_39073497_-	SINE	Alu	AluSx
CAediting_987286	chr14_39073498_-	SINE	Alu	AluSx
CAediting_987287	chr14_39073510_-	SINE	Alu	AluSx
CAediting_987288	chr14_39073513_-	SINE	Alu	AluSx
CAediting_987289	chr14_39073521_-	SINE	Alu	AluSx
CAediting_987290	chr14_39073549_-	SINE	Alu	AluSx
CAediting_987291	chr14_39073552_-	SINE	Alu	AluSx
CAediting_987292	chr14_39073561_-	SINE	Alu	AluSx
CAediting_987293	chr14_39073566_-	SINE	Alu	AluSx
CAediting_987294	chr14_39073567_-	SINE	Alu	AluSx
CAediting_987295	chr14_39073662_-	SINE	Alu	AluSg7
CAediting_987296	chr14_39073672_-	SINE	Alu	AluSg7
CAediting_987297	chr14_39073677_-	SINE	Alu	AluSg7
CAediting_987298	chr14_39073682_-	SINE	Alu	AluSg7
CAediting_987299	chr14_39073695_-	SINE	Alu	AluSg7
CAediting_987300	chr14_39073706_-	SINE	Alu	AluSg7
CAediting_987301	chr14_39073707_-	SINE	Alu	AluSg7
CAediting_987302	chr14_39073725_-	SINE	Alu	AluSg7
CAediting_987303	chr14_39073742_-	SINE	Alu	AluSg7
CAediting_987304	chr14_39073747_-	SINE	Alu	AluSg7
CAediting_987305	chr14_39073748_-	SINE	Alu	AluSg7
CAediting_987306	chr14_39073754_-	SINE	Alu	AluSg7
CAediting_987307	chr14_39073774_-	SINE	Alu	AluSg7
CAediting_987308	chr14_39073787_-	SINE	Alu	AluSg7
CAediting_987309	chr14_39073789_-	SINE	Alu	AluSg7
CAediting_987310	chr14_39073792_-	SINE	Alu	AluSg7
CAediting_987311	chr14_39073803_-	SINE	Alu	AluSg7
CAediting_987312	chr14_39073805_-	SINE	Alu	AluSg7
CAediting_987313	chr14_39073813_-	SINE	Alu	AluSg7
CAediting_987314	chr14_39073823_-	SINE	Alu	AluSg7
CAediting_987315	chr14_39073829_-	SINE	Alu	AluSg7
CAediting_987316	chr14_39073850_-	SINE	Alu	AluSg7
CAediting_987317	chr14_39073880_-	SINE	Alu	AluSg7
CAediting_987318	chr14_39075071_-	SINE	Alu	AluY
CAediting_987319	chr14_39076517_-	SINE	Alu	FLAM_A
CAediting_987320	chr14_39077528_-	SINE	Alu	AluSg7
CAediting_987321	chr14_39077733_-	SINE	Alu	AluSz6
CAediting_987322	chr14_39077795_-	SINE	Alu	AluSz6
CAediting_987323	chr14_39077811_-	SINE	Alu	AluSz6
CAediting_987324	chr14_39081002_-	SINE	Alu	AluJr
CAediting_987325	chr14_39083648_-	SINE	Alu	AluSx1
CAediting_987326	chr14_39092894_-	SINE	Alu	AluY
CAediting_987327	chr14_39093652_-	SINE	Alu	AluJb
CAediting_987328	chr14_39099255_-	SINE	Alu	AluSc8
CAediting_987329	chr14_39099256_-	SINE	Alu	AluSc8
CAediting_987330	chr14_39099287_-	SINE	Alu	AluSc8
CAediting_987331	chr14_39099291_-	SINE	Alu	AluSc8
CAediting_987332	chr14_39099297_-	SINE	Alu	AluSc8
CAediting_987333	chr14_39099323_-	SINE	Alu	AluSc8
CAediting_987334	chr14_39099328_-	SINE	Alu	AluSc8
CAediting_987335	chr14_39099336_-	SINE	Alu	AluSc8
CAediting_987336	chr14_39099338_-	SINE	Alu	AluSc8
CAediting_987337	chr14_39099342_-	SINE	Alu	AluSc8
CAediting_987338	chr14_39099353_-	SINE	Alu	AluSc8
CAediting_987339	chr14_39099354_-	SINE	Alu	AluSc8
CAediting_987340	chr14_39099387_-	SINE	Alu	AluSc8
CAediting_987341	chr14_39099395_-	SINE	Alu	AluSc8
CAediting_987342	chr14_39099430_-	SINE	Alu	AluSc8
CAediting_987343	chr14_39099431_-	SINE	Alu	AluSc8
CAediting_987344	chr14_39099439_-	SINE	Alu	AluSc8

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RNA A-to-I editing events in the alternative splicing sites for SEC23A

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000100934.13.SEC23A.

Correlation between RNA A-to-I editing and PSI for ENSG00000100934.13.SEC23A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SEC23A

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SEC23A

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SEC23A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_987326	chr14_39092894_-	ENSG00000100934.13	ENST00000548032	hsa-miR-431-5p	39092890	39092896	7mer-m8	39092889	39092909	140	-13.39
CAediting_987326	chr14_39092894_-	ENSG00000100934.13	ENST00000548032	hsa-miR-5691	39092893	39092900	8mer-1a	39092893	39092915	146	-19.21

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SEC23A

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SEC23A

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for SEC23A

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SEC23A

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SEC23A

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SEC23A

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SEC23A	C0029408	Degenerative polyarthritis	1	CTD_human
SEC23A	C0086743	Osteoarthrosis Deformans	1	CTD_human
SEC23A	C1843042	Craniolenticulosutural Dysplasia	1	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene