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Editing gene: LINC01320 (CAeditome ID:104355288)

Gene summary for LINC01320

Gene summary

Gene information	Gene symbol	LINC01320
	Gene ID	104355288
	Gene name	long intergenic non-protein coding RNA 1320
	Synonyms	-
	Cytomap	2p22.3
	Type of gene	ncRNA
	Description	-
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC01320

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000228262.7

RNA A-to-I editing events in Cancer.

CAediting_169883(34679706, +), CAediting_169884(34679843, +), CAediting_169885(34681960, +), CAediting_169886(34681982, +), CAediting_169887(34681983, +), CAediting_169888(34682009, +), CAediting_169889(34682026, +), CAediting_169890(34682040, +), CAediting_169891(34682049, +), CAediting_169892(34682050, +), CAediting_169893(34682059, +), CAediting_169894(34682060, +), CAediting_169895(34682075, +), CAediting_169896(34682076, +), CAediting_169897(34682116, +), CAediting_169898(34682117, +), CAediting_169899(34682122, +), CAediting_169900(34682158, +), CAediting_169901(34682169, +), CAediting_169902(34682228, +), CAediting_169903(34684303, +), CAediting_169904(34704858, +), CAediting_169905(34722512, +), CAediting_169906(34722513, +), CAediting_169907(34722518, +), CAediting_169908(34722521, +), CAediting_169909(34722572, +), CAediting_169910(34722581, +), CAediting_169911(34722582, +), CAediting_169912(34722589, +), CAediting_169913(34722590, +), CAediting_169914(34722604, +), CAediting_169915(34722622, +), CAediting_169916(34722626, +), CAediting_169917(34722631, +), CAediting_169918(34722632, +), CAediting_169919(34722660, +), CAediting_169920(34722699, +), CAediting_169921(34722708, +), CAediting_169922(34722727, +), CAediting_169923(34722735, +), CAediting_169924(34722811, +), CAediting_169925(34722812, +), CAediting_169926(34722814, +), CAediting_169927(34722823, +), CAediting_169928(34722824, +), CAediting_169929(34722827, +), CAediting_169930(34722828, +), CAediting_169931(34725601, +), CAediting_169932(34725659, +), CAediting_169933(34725675, +), CAediting_169934(34725699, +), CAediting_169935(34725792, +), CAediting_169936(34725837, +), CAediting_169937(34725846, +), CAediting_169938(34725847, +), CAediting_169939(34725868, +), CAediting_169940(34730833, +), CAediting_169941(34730841, +), CAediting_169942(34730842, +), CAediting_169943(34730868, +), CAediting_169944(34730877, +), CAediting_169945(34730885, +), CAediting_169946(34730908, +), CAediting_169947(34730909, +), CAediting_169948(34730911, +), CAediting_169949(34730950, +), CAediting_169950(34730976, +), CAediting_169951(34730986, +), CAediting_169952(34731002, +), CAediting_169953(34731008, +), CAediting_169954(34731016, +), CAediting_169955(34731017, +), CAediting_169956(34731024, +), CAediting_169957(34731028, +), CAediting_169958(34731037, +), CAediting_169959(34731046, +), CAediting_169960(34731056, +),

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RNA editing positional annotations for LINC01320 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_169883	chr2_34679706_+	ncRNA_intronic
CAediting_169884	chr2_34679843_+	ncRNA_intronic
CAediting_169885	chr2_34681960_+	ncRNA_intronic
CAediting_169886	chr2_34681982_+	ncRNA_intronic
CAediting_169887	chr2_34681983_+	ncRNA_intronic
CAediting_169888	chr2_34682009_+	ncRNA_intronic
CAediting_169889	chr2_34682026_+	ncRNA_intronic
CAediting_169890	chr2_34682040_+	ncRNA_intronic
CAediting_169891	chr2_34682049_+	ncRNA_intronic
CAediting_169892	chr2_34682050_+	ncRNA_intronic
CAediting_169893	chr2_34682059_+	ncRNA_intronic
CAediting_169894	chr2_34682060_+	ncRNA_intronic
CAediting_169895	chr2_34682075_+	ncRNA_intronic
CAediting_169896	chr2_34682076_+	ncRNA_intronic
CAediting_169897	chr2_34682116_+	ncRNA_intronic
CAediting_169898	chr2_34682117_+	ncRNA_intronic
CAediting_169899	chr2_34682122_+	ncRNA_intronic
CAediting_169900	chr2_34682158_+	ncRNA_intronic
CAediting_169901	chr2_34682169_+	ncRNA_intronic
CAediting_169902	chr2_34682228_+	ncRNA_intronic
CAediting_169903	chr2_34684303_+	ncRNA_intronic
CAediting_169904	chr2_34704858_+	ncRNA_exonic
CAediting_169905	chr2_34722512_+	ncRNA_exonic
CAediting_169906	chr2_34722513_+	ncRNA_exonic
CAediting_169907	chr2_34722518_+	ncRNA_exonic
CAediting_169908	chr2_34722521_+	ncRNA_exonic
CAediting_169909	chr2_34722572_+	ncRNA_intronic
CAediting_169910	chr2_34722581_+	ncRNA_intronic
CAediting_169911	chr2_34722582_+	ncRNA_intronic
CAediting_169912	chr2_34722589_+	ncRNA_intronic
CAediting_169913	chr2_34722590_+	ncRNA_intronic
CAediting_169914	chr2_34722604_+	ncRNA_intronic
CAediting_169915	chr2_34722622_+	ncRNA_intronic
CAediting_169916	chr2_34722626_+	ncRNA_intronic
CAediting_169917	chr2_34722631_+	ncRNA_intronic
CAediting_169918	chr2_34722632_+	ncRNA_intronic
CAediting_169919	chr2_34722660_+	ncRNA_intronic
CAediting_169920	chr2_34722699_+	ncRNA_intronic
CAediting_169921	chr2_34722708_+	ncRNA_intronic
CAediting_169922	chr2_34722727_+	ncRNA_intronic
CAediting_169923	chr2_34722735_+	ncRNA_intronic
CAediting_169924	chr2_34722811_+	ncRNA_intronic
CAediting_169925	chr2_34722812_+	ncRNA_intronic
CAediting_169926	chr2_34722814_+	ncRNA_intronic
CAediting_169927	chr2_34722823_+	ncRNA_intronic
CAediting_169928	chr2_34722824_+	ncRNA_intronic
CAediting_169929	chr2_34722827_+	ncRNA_intronic
CAediting_169930	chr2_34722828_+	ncRNA_intronic
CAediting_169931	chr2_34725601_+	ncRNA_intronic
CAediting_169932	chr2_34725659_+	ncRNA_intronic
CAediting_169933	chr2_34725675_+	ncRNA_intronic
CAediting_169934	chr2_34725699_+	ncRNA_intronic
CAediting_169935	chr2_34725792_+	ncRNA_intronic
CAediting_169936	chr2_34725837_+	ncRNA_intronic
CAediting_169937	chr2_34725846_+	ncRNA_intronic
CAediting_169938	chr2_34725847_+	ncRNA_intronic
CAediting_169939	chr2_34725868_+	ncRNA_intronic
CAediting_169940	chr2_34730833_+	ncRNA_intronic
CAediting_169941	chr2_34730841_+	ncRNA_intronic
CAediting_169942	chr2_34730842_+	ncRNA_intronic
CAediting_169943	chr2_34730868_+	ncRNA_intronic
CAediting_169944	chr2_34730877_+	ncRNA_intronic
CAediting_169945	chr2_34730885_+	ncRNA_intronic
CAediting_169946	chr2_34730908_+	ncRNA_intronic
CAediting_169947	chr2_34730909_+	ncRNA_intronic
CAediting_169948	chr2_34730911_+	ncRNA_intronic
CAediting_169949	chr2_34730950_+	ncRNA_intronic
CAediting_169950	chr2_34730976_+	ncRNA_intronic
CAediting_169951	chr2_34730986_+	ncRNA_intronic
CAediting_169952	chr2_34731002_+	ncRNA_intronic
CAediting_169953	chr2_34731008_+	ncRNA_intronic
CAediting_169954	chr2_34731016_+	ncRNA_intronic
CAediting_169955	chr2_34731017_+	ncRNA_intronic
CAediting_169956	chr2_34731024_+	ncRNA_intronic
CAediting_169957	chr2_34731028_+	ncRNA_intronic
CAediting_169958	chr2_34731037_+	ncRNA_intronic
CAediting_169959	chr2_34731046_+	ncRNA_intronic
CAediting_169960	chr2_34731056_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_169883	chr2_34679706_+	SINE	Alu	AluY
CAediting_169884	chr2_34679843_+	SINE	Alu	AluY
CAediting_169885	chr2_34681960_+	SINE	Alu	AluSq4
CAediting_169886	chr2_34681982_+	SINE	Alu	AluSq4
CAediting_169887	chr2_34681983_+	SINE	Alu	AluSq4
CAediting_169888	chr2_34682009_+	SINE	Alu	AluSq4
CAediting_169889	chr2_34682026_+	SINE	Alu	AluSq4
CAediting_169890	chr2_34682040_+	SINE	Alu	AluSq4
CAediting_169891	chr2_34682049_+	SINE	Alu	AluSq4
CAediting_169892	chr2_34682050_+	SINE	Alu	AluSq4
CAediting_169893	chr2_34682059_+	SINE	Alu	AluSq4
CAediting_169894	chr2_34682060_+	SINE	Alu	AluSq4
CAediting_169895	chr2_34682075_+	SINE	Alu	AluSq4
CAediting_169896	chr2_34682076_+	SINE	Alu	AluSq4
CAediting_169897	chr2_34682116_+	SINE	Alu	AluSq4
CAediting_169898	chr2_34682117_+	SINE	Alu	AluSq4
CAediting_169899	chr2_34682122_+	SINE	Alu	AluSq4
CAediting_169900	chr2_34682158_+	SINE	Alu	AluSq4
CAediting_169901	chr2_34682169_+	SINE	Alu	AluSq4
CAediting_169902	chr2_34682228_+	SINE	Alu	AluSq4
CAediting_169904	chr2_34704858_+	SINE	Alu	AluY
CAediting_169905	chr2_34722512_+	SINE	Alu	AluJo
CAediting_169906	chr2_34722513_+	SINE	Alu	AluJo
CAediting_169907	chr2_34722518_+	SINE	Alu	AluJo
CAediting_169908	chr2_34722521_+	SINE	Alu	AluJo
CAediting_169909	chr2_34722572_+	SINE	Alu	AluJo
CAediting_169910	chr2_34722581_+	SINE	Alu	AluJo
CAediting_169911	chr2_34722582_+	SINE	Alu	AluJo
CAediting_169912	chr2_34722589_+	SINE	Alu	AluJo
CAediting_169913	chr2_34722590_+	SINE	Alu	AluJo
CAediting_169914	chr2_34722604_+	SINE	Alu	AluJo
CAediting_169915	chr2_34722622_+	SINE	Alu	AluJo
CAediting_169916	chr2_34722626_+	SINE	Alu	AluJo
CAediting_169917	chr2_34722631_+	SINE	Alu	AluJo
CAediting_169918	chr2_34722632_+	SINE	Alu	AluJo
CAediting_169919	chr2_34722660_+	SINE	Alu	AluJo
CAediting_169920	chr2_34722699_+	SINE	Alu	AluJo
CAediting_169921	chr2_34722708_+	SINE	Alu	AluJo
CAediting_169922	chr2_34722727_+	SINE	Alu	AluJo
CAediting_169923	chr2_34722735_+	SINE	Alu	AluJo
CAediting_169924	chr2_34722811_+	SINE	Alu	AluJo
CAediting_169925	chr2_34722812_+	SINE	Alu	AluJo
CAediting_169926	chr2_34722814_+	SINE	Alu	AluJo
CAediting_169927	chr2_34722823_+	SINE	Alu	AluJo
CAediting_169928	chr2_34722824_+	SINE	Alu	AluJo
CAediting_169929	chr2_34722827_+	SINE	Alu	AluJo
CAediting_169930	chr2_34722828_+	SINE	Alu	AluJo
CAediting_169931	chr2_34725601_+	SINE	Alu	AluY
CAediting_169932	chr2_34725659_+	SINE	Alu	AluY
CAediting_169933	chr2_34725675_+	SINE	Alu	AluY
CAediting_169934	chr2_34725699_+	SINE	Alu	AluY
CAediting_169935	chr2_34725792_+	SINE	Alu	AluY
CAediting_169936	chr2_34725837_+	SINE	Alu	AluY
CAediting_169937	chr2_34725846_+	SINE	Alu	AluY
CAediting_169938	chr2_34725847_+	SINE	Alu	AluY
CAediting_169939	chr2_34725868_+	SINE	Alu	AluY
CAediting_169940	chr2_34730833_+	SINE	Alu	AluY
CAediting_169941	chr2_34730841_+	SINE	Alu	AluY
CAediting_169942	chr2_34730842_+	SINE	Alu	AluY
CAediting_169943	chr2_34730868_+	SINE	Alu	AluY
CAediting_169944	chr2_34730877_+	SINE	Alu	AluY
CAediting_169945	chr2_34730885_+	SINE	Alu	AluY
CAediting_169946	chr2_34730908_+	SINE	Alu	AluY
CAediting_169947	chr2_34730909_+	SINE	Alu	AluY
CAediting_169948	chr2_34730911_+	SINE	Alu	AluY
CAediting_169949	chr2_34730950_+	SINE	Alu	AluY
CAediting_169950	chr2_34730976_+	SINE	Alu	AluY
CAediting_169951	chr2_34730986_+	SINE	Alu	AluY
CAediting_169952	chr2_34731002_+	SINE	Alu	AluY
CAediting_169953	chr2_34731008_+	SINE	Alu	AluY
CAediting_169954	chr2_34731016_+	SINE	Alu	AluY
CAediting_169955	chr2_34731017_+	SINE	Alu	AluY
CAediting_169956	chr2_34731024_+	SINE	Alu	AluY
CAediting_169957	chr2_34731028_+	SINE	Alu	AluY
CAediting_169958	chr2_34731037_+	SINE	Alu	AluY
CAediting_169959	chr2_34731046_+	SINE	Alu	AluY
CAediting_169960	chr2_34731056_+	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for LINC01320

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000228262.7.LINC01320.

Correlation between RNA A-to-I editing and PSI for ENSG00000228262.7.LINC01320.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC01320

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LINC01320

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC01320

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-513a-5p	34722507	34722513	7mer-m8	34722497	34722514	152	-17.32
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-638	34722512	34722518	7mer-1a	34722494	34722518	155	-34.38
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-513a-5p	34722507	34722513	7mer-m8	34722497	34722514	152	-17.32
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-638	34722512	34722518	7mer-1a	34722494	34722518	155	-34.38
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-513a-5p	34722507	34722513	7mer-m8	34722497	34722514	152	-17.32
CAediting_169905	chr2_34722512_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-638	34722512	34722518	7mer-1a	34722494	34722518	155	-34.38
CAediting_169906	chr2_34722513_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-8052	34722512	34722518	7mer-1a	34722500	34722518	148	-29.06
CAediting_169906	chr2_34722513_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-8052	34722512	34722518	7mer-1a	34722500	34722518	148	-29.06
CAediting_169906	chr2_34722513_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-8052	34722512	34722518	7mer-1a	34722500	34722518	148	-29.06
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-1537-3p	34722520	34722525	6mer	34722504	34722526	141	-15.07
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-1537-3p	34722520	34722525	6mer	34722504	34722526	141	-15.07
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-1537-3p	34722520	34722525	6mer	34722504	34722526	141	-15.07

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_169907	chr2_34722518_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-548av-3p	34722519	34722525	7mer-m8	34722504	34722526	145	-9.46
CAediting_169907	chr2_34722518_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-548av-3p	34722519	34722525	7mer-m8	34722504	34722526	145	-9.46
CAediting_169907	chr2_34722518_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-3692-5p	34722516	34722522	7mer-m8	34722495	34722523	151	-24.4
CAediting_169908	chr2_34722521_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-548av-3p	34722519	34722525	7mer-m8	34722504	34722526	145	-9.46

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688081	chr9_63819627_+	ENSG00000228262.7	ENST00000621006.1	hsa-miR-4477b	34732416	34732422	7mer-m8	34732401	34732423	156	-18.96
CAediting_1054808	chr15_66496985_-	ENSG00000228262.7	ENST00000423663.4	hsa-miR-4512	34677850	34677856	7mer-m8	34677838	34677857	143	-17.28
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000423663.4	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000621006.1	hsa-miR-1303	34732176	34732183	8mer-1a	34732163	34732183	147	-14.59
CAediting_1054808	chr15_66496985_-	ENSG00000228262.7	ENST00000628407.1	hsa-miR-4512	34677850	34677856	7mer-m8	34677838	34677857	143	-17.28
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000628407.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_1054808	chr15_66496985_-	ENSG00000228262.7	ENST00000625995.1	hsa-miR-4512	34677850	34677856	7mer-m8	34677838	34677857	143	-17.28
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000625995.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000616475.3	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_1054808	chr15_66496985_-	ENSG00000228262.7	ENST00000627935.1	hsa-miR-4512	34677850	34677856	7mer-m8	34677838	34677857	143	-17.28
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000627935.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_414656	chr5_72878640_+	ENSG00000228262.7	ENST00000587085.1	hsa-miR-4804-3p	34735267	34735273	7mer-m8	34735254	34735274	140	-9.4
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000604250.2	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000626601.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_1054808	chr15_66496985_-	ENSG00000228262.7	ENST00000626008.1	hsa-miR-4512	34677850	34677856	7mer-m8	34677838	34677857	143	-17.28
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000626008.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000630686.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000626688.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000627270.1	hsa-miR-1303	34713741	34713747	7mer-m8	34713729	34713748	151	-18.15

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_396018	chr5_1062918_-	ENSG00000228262.7	ENST00000621006.1	hsa-miR-4635	34732322	34732327	6mer	34732308	34732328	141	-14.76
CAediting_442554	chr5_154685830_+	ENSG00000228262.7	ENST00000587085.1	hsa-miR-1303	34735553	34735559	7mer-m8	34735540	34735560	142	-10.87
CAediting_1306323	chr19_13836462_-	ENSG00000228262.7	ENST00000626688.1	hsa-miR-27a-3p	34710453	34710460	8mer-1a	34691659	34710460	142	-12.85

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC01320

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000423663.4	lincRNA
ENST00000604250.2	lincRNA
ENST00000627935.1	lincRNA
ENST00000607437.3	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_169905	ENST00000423663.4	chr2_34722512_+	-361.60	-360.20	-367.40
CAediting_169906	ENST00000423663.4	chr2_34722513_+	-362.00	-360.20	-367.40
CAediting_169907	ENST00000423663.4	chr2_34722518_+	-359.50	-360.20	-367.40
CAediting_169908	ENST00000423663.4	chr2_34722521_+	-360.40	-360.20	-367.40
CAediting_169905	ENST00000604250.2	chr2_34722512_+	-244.90	-244.90	-246.00
CAediting_169906	ENST00000604250.2	chr2_34722513_+	-246.70	-244.90	-246.00
CAediting_169907	ENST00000604250.2	chr2_34722518_+	-244.20	-244.90	-246.00
CAediting_169908	ENST00000604250.2	chr2_34722521_+	-246.20	-244.90	-246.00
CAediting_169905	ENST00000627935.1	chr2_34722512_+	-267.90	-267.90	-268.30
CAediting_169906	ENST00000627935.1	chr2_34722513_+	-269.70	-267.90	-268.30
CAediting_169907	ENST00000627935.1	chr2_34722518_+	-267.20	-267.90	-268.30
CAediting_169908	ENST00000627935.1	chr2_34722521_+	-268.50	-267.90	-268.30
CAediting_169904	ENST00000607437.3	chr2_34704858_+	-156.10	-153.50	-156.10

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Relation with ADAR for LINC01320

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_169897	chr2_34682116_+	.	.	0.0123174485526614	0.344759184897773	.	.
KIRP	CAediting_169905	chr2_34722512_+	0.00653133848122501	0.162769344511193	.	.	.	.
KIRC	CAediting_169911	chr2_34722582_+	0.03555269455684	0.0978245433866135	.	.	.	.
KIRP	CAediting_169911	chr2_34722582_+	0.0118248273383914	0.18134787774882	.	.	.	.

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Relation with cancer stages for LINC01320

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRP	clinical_stage	CAediting_169905	chr2_34722512_+	0.0487044922614255	0.141357587175327
KIRP	clinical_stage	CAediting_169911	chr2_34722582_+	0.0136279321599902	0.215890731191806
KIRP	clinical_stage	CAediting_169912	chr2_34722589_+	0.00766868375398069	0.20627474449334
KIRP	clinical_stage	CAediting_169913	chr2_34722590_+	0.00472102833663245	0.20206644257184
KIRP	pathologic_stage	CAediting_169907	chr2_34722518_+	0.0118683981245887	0.204285456355978
KIRP	pathologic_stage	CAediting_169911	chr2_34722582_+	0.0125415005773283	0.188915732199623
KIRP	pathologic_stage	CAediting_169912	chr2_34722589_+	0.00133139020936649	0.21601936866784
KIRP	pathologic_stage	CAediting_169913	chr2_34722590_+	0.00946322795395341	0.16349798002266
OV	clinical_stage	CAediting_169911	chr2_34722582_+	0.0258310315450873	0.229865339990085
OV	clinical_stage	CAediting_169912	chr2_34722589_+	0.0218358472724444	0.204173305523139
UCEC	clinical_stage	CAediting_169905	chr2_34722512_+	0.0295709614429755	-0.168428041490262

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Relation with survival for LINC01320

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
KIRP	CAediting_169907	chr2_34722518_+	0.0395570395775521	0.00987334	1103.67

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RelatedDrugs for LINC01320

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC01320

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene