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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HMG20A (CAeditome ID:10363)

Gene summary for HMG20A

check button Gene summary
Gene informationGene symbol

HMG20A

Gene ID

10363

Gene namehigh mobility group 20A
SynonymsHMGX1|HMGXB1
Cytomap

15q24.3

Type of geneprotein-coding
Descriptionhigh mobility group protein 20AHMG box domain containing 1HMG box-containing protein 20AHMG domain-containing protein 1HMG domain-containing protein HMGX1
Modification date20210518
UniProtAcc

Q9NP66

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for HMG20A

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000140382.13

check button RNA A-to-I editing events in Cancer.
CAediting_1064066(77432585, +), CAediting_1064067(77432591, +), CAediting_1064068(77433127, +), CAediting_1064069(77433153, +), CAediting_1064070(77433154, +), CAediting_1064071(77433201, +), CAediting_1064072(77433225, +), CAediting_1064073(77433227, +), CAediting_1064074(77433262, +), CAediting_1064075(77435568, +), CAediting_1064076(77443911, +), CAediting_1064077(77448994, +), CAediting_1064078(77449004, +), CAediting_1064079(77449005, +), CAediting_1064080(77451745, +), CAediting_1064081(77453532, +), CAediting_1064082(77453533, +), CAediting_1064083(77456471, +), CAediting_1064084(77464986, +), CAediting_1064085(77464991, +), CAediting_1064086(77465005, +), CAediting_1064087(77465026, +), CAediting_1064088(77465027, +), CAediting_1064089(77465031, +), CAediting_1064090(77465050, +), CAediting_1064091(77465058, +), CAediting_1064092(77465059, +), CAediting_1064093(77465082, +), CAediting_1064094(77465083, +), CAediting_1064095(77465084, +), CAediting_1064096(77465141, +), CAediting_1064097(77465142, +), CAediting_1064098(77465155, +), CAediting_1064099(77465158, +), CAediting_1064100(77465164, +), CAediting_1064101(77465165, +), CAediting_1064102(77465168, +), CAediting_1064103(77465174, +), CAediting_1064104(77465182, +), CAediting_1064105(77465183, +), CAediting_1064106(77465210, +), CAediting_1064107(77465215, +), CAediting_1064108(77465243, +), CAediting_1064109(77465289, +), CAediting_1064110(77465427, +), CAediting_1064111(77465457, +), CAediting_1064112(77465465, +), CAediting_1064113(77465489, +), CAediting_1064114(77465496, +), CAediting_1064115(77465521, +), CAediting_1064116(77465522, +), CAediting_1064117(77465525, +), CAediting_1064118(77465535, +), CAediting_1064119(77465562, +), CAediting_1064120(77465617, +), CAediting_1064121(77465630, +), CAediting_1064122(77465656, +), CAediting_1064123(77466166, +), CAediting_1064124(77466203, +), CAediting_1064125(77466335, +), CAediting_1064126(77466351, +), CAediting_1064127(77472338, +), CAediting_1064128(77472378, +), CAediting_1064129(77472481, +), CAediting_1064130(77472536, +), CAediting_1064131(77472537, +), CAediting_1064132(77476226, +), CAediting_1064133(77476227, +), CAediting_1064134(77476253, +), CAediting_1064135(77476320, +), CAediting_1064136(77476321, +), CAediting_1064137(77476322, +), CAediting_1064138(77476328, +), CAediting_1064139(77476338, +), CAediting_1064140(77476342, +), CAediting_1064141(77476364, +), CAediting_1064142(77476365, +), CAediting_1064143(77476387, +), CAediting_1064144(77476394, +), CAediting_1064145(77476405, +), CAediting_1064146(77476406, +), CAediting_1064147(77476417, +), CAediting_1064148(77476426, +), CAediting_1064149(77476430, +), CAediting_1064150(77476467, +), CAediting_1064151(77480054, +), CAediting_1064152(77480060, +), CAediting_1064153(77480193, +), CAediting_1064154(77480194, +), CAediting_1064155(77480195, +), CAediting_1064156(77480201, +), CAediting_1064157(77480352, +), CAediting_1064158(77480409, +), CAediting_1064159(77480410, +), CAediting_1064160(77480466, +), CAediting_1064161(77480506, +),

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RNA editing positional annotations for HMG20A using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1064066chr15_77432585_+ncRNA_intronic
CAediting_1064067chr15_77432591_+ncRNA_intronic
CAediting_1064068chr15_77433127_+ncRNA_intronic
CAediting_1064069chr15_77433153_+ncRNA_intronic
CAediting_1064070chr15_77433154_+ncRNA_intronic
CAediting_1064071chr15_77433201_+ncRNA_intronic
CAediting_1064072chr15_77433225_+ncRNA_intronic
CAediting_1064073chr15_77433227_+ncRNA_intronic
CAediting_1064074chr15_77433262_+ncRNA_intronic
CAediting_1064075chr15_77435568_+ncRNA_intronic
CAediting_1064076chr15_77443911_+ncRNA_intronic
CAediting_1064077chr15_77448994_+ncRNA_intronic
CAediting_1064078chr15_77449004_+ncRNA_intronic
CAediting_1064079chr15_77449005_+ncRNA_intronic
CAediting_1064080chr15_77451745_+ncRNA_intronic
CAediting_1064081chr15_77453532_+ncRNA_intronic
CAediting_1064082chr15_77453533_+ncRNA_intronic
CAediting_1064083chr15_77456471_+ncRNA_intronic
CAediting_1064084chr15_77464986_+intronic
CAediting_1064085chr15_77464991_+intronic
CAediting_1064086chr15_77465005_+intronic
CAediting_1064087chr15_77465026_+intronic
CAediting_1064088chr15_77465027_+intronic
CAediting_1064089chr15_77465031_+intronic
CAediting_1064090chr15_77465050_+intronic
CAediting_1064091chr15_77465058_+intronic
CAediting_1064092chr15_77465059_+intronic
CAediting_1064093chr15_77465082_+intronic
CAediting_1064094chr15_77465083_+intronic
CAediting_1064095chr15_77465084_+intronic
CAediting_1064096chr15_77465141_+intronic
CAediting_1064097chr15_77465142_+intronic
CAediting_1064098chr15_77465155_+intronic
CAediting_1064099chr15_77465158_+intronic
CAediting_1064100chr15_77465164_+intronic
CAediting_1064101chr15_77465165_+intronic
CAediting_1064102chr15_77465168_+intronic
CAediting_1064103chr15_77465174_+intronic
CAediting_1064104chr15_77465182_+intronic
CAediting_1064105chr15_77465183_+intronic
CAediting_1064106chr15_77465210_+intronic
CAediting_1064107chr15_77465215_+intronic
CAediting_1064108chr15_77465243_+intronic
CAediting_1064109chr15_77465289_+intronic
CAediting_1064110chr15_77465427_+intronic
CAediting_1064111chr15_77465457_+intronic
CAediting_1064112chr15_77465465_+intronic
CAediting_1064113chr15_77465489_+intronic
CAediting_1064114chr15_77465496_+intronic
CAediting_1064115chr15_77465521_+intronic
CAediting_1064116chr15_77465522_+intronic
CAediting_1064117chr15_77465525_+intronic
CAediting_1064118chr15_77465535_+intronic
CAediting_1064119chr15_77465562_+intronic
CAediting_1064120chr15_77465617_+intronic
CAediting_1064121chr15_77465630_+intronic
CAediting_1064122chr15_77465656_+intronic
CAediting_1064123chr15_77466166_+intronic
CAediting_1064124chr15_77466203_+intronic
CAediting_1064125chr15_77466335_+intronic
CAediting_1064126chr15_77466351_+intronic
CAediting_1064127chr15_77472338_+intronic
CAediting_1064128chr15_77472378_+intronic
CAediting_1064129chr15_77472481_+intronic
CAediting_1064130chr15_77472536_+intronic
CAediting_1064131chr15_77472537_+intronic
CAediting_1064132chr15_77476226_+intronic
CAediting_1064133chr15_77476227_+intronic
CAediting_1064134chr15_77476253_+intronic
CAediting_1064135chr15_77476320_+intronic
CAediting_1064136chr15_77476321_+intronic
CAediting_1064137chr15_77476322_+intronic
CAediting_1064138chr15_77476328_+intronic
CAediting_1064139chr15_77476338_+intronic
CAediting_1064140chr15_77476342_+intronic
CAediting_1064141chr15_77476364_+intronic
CAediting_1064142chr15_77476365_+intronic
CAediting_1064143chr15_77476387_+intronic
CAediting_1064144chr15_77476394_+intronic
CAediting_1064145chr15_77476405_+intronic
CAediting_1064146chr15_77476406_+intronic
CAediting_1064147chr15_77476417_+intronic
CAediting_1064148chr15_77476426_+intronic
CAediting_1064149chr15_77476430_+intronic
CAediting_1064150chr15_77476467_+intronic
CAediting_1064151chr15_77480054_+ncRNA_intronic
CAediting_1064152chr15_77480060_+ncRNA_intronic
CAediting_1064153chr15_77480193_+ncRNA_intronic
CAediting_1064154chr15_77480194_+ncRNA_intronic
CAediting_1064155chr15_77480195_+ncRNA_intronic
CAediting_1064156chr15_77480201_+ncRNA_intronic
CAediting_1064157chr15_77480352_+ncRNA_intronic
CAediting_1064158chr15_77480409_+ncRNA_intronic
CAediting_1064159chr15_77480410_+ncRNA_intronic
CAediting_1064160chr15_77480466_+ncRNA_intronic
CAediting_1064161chr15_77480506_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1064066chr15_77432585_+SINEAluAluSq2
CAediting_1064067chr15_77432591_+SINEAluAluSq2
CAediting_1064068chr15_77433127_+SINEAluAluJr4
CAediting_1064069chr15_77433153_+SINEAluAluJr4
CAediting_1064070chr15_77433154_+SINEAluAluJr4
CAediting_1064071chr15_77433201_+SINEAluAluJr4
CAediting_1064072chr15_77433225_+SINEAluAluJr4
CAediting_1064073chr15_77433227_+SINEAluAluJr4
CAediting_1064074chr15_77433262_+SINEAluAluJr4
CAediting_1064075chr15_77435568_+SINEAluAluSz
CAediting_1064076chr15_77443911_+SINEAluAluJb
CAediting_1064077chr15_77448994_+SINEAluAluSg7
CAediting_1064078chr15_77449004_+SINEAluAluSg7
CAediting_1064079chr15_77449005_+SINEAluAluSg7
CAediting_1064080chr15_77451745_+LINEL2L2a
CAediting_1064081chr15_77453532_+LINEL1L1MB7
CAediting_1064082chr15_77453533_+LINEL1L1MB7
CAediting_1064083chr15_77456471_+SINEAluAluSz6
CAediting_1064084chr15_77464986_+SINEAluAluSx
CAediting_1064085chr15_77464991_+SINEAluAluSx
CAediting_1064086chr15_77465005_+SINEAluAluSx
CAediting_1064087chr15_77465026_+SINEAluAluSx
CAediting_1064088chr15_77465027_+SINEAluAluSx
CAediting_1064089chr15_77465031_+SINEAluAluSx
CAediting_1064090chr15_77465050_+SINEAluAluSx
CAediting_1064091chr15_77465058_+SINEAluAluSx
CAediting_1064092chr15_77465059_+SINEAluAluSx
CAediting_1064093chr15_77465082_+SINEAluAluSx
CAediting_1064094chr15_77465083_+SINEAluAluSx
CAediting_1064095chr15_77465084_+SINEAluAluSx
CAediting_1064096chr15_77465141_+SINEAluAluSx
CAediting_1064097chr15_77465142_+SINEAluAluSx
CAediting_1064098chr15_77465155_+SINEAluAluSx
CAediting_1064099chr15_77465158_+SINEAluAluSx
CAediting_1064100chr15_77465164_+SINEAluAluSx
CAediting_1064101chr15_77465165_+SINEAluAluSx
CAediting_1064102chr15_77465168_+SINEAluAluSx
CAediting_1064103chr15_77465174_+SINEAluAluSx
CAediting_1064104chr15_77465182_+SINEAluAluSx
CAediting_1064105chr15_77465183_+SINEAluAluSx
CAediting_1064106chr15_77465210_+SINEAluAluSx
CAediting_1064107chr15_77465215_+SINEAluAluSx
CAediting_1064108chr15_77465243_+SINEAluAluSx
CAediting_1064109chr15_77465289_+SINEAluAluSx
CAediting_1064110chr15_77465427_+SINEAluAluSz
CAediting_1064111chr15_77465457_+SINEAluAluSz
CAediting_1064112chr15_77465465_+SINEAluAluSz
CAediting_1064113chr15_77465489_+SINEAluAluSz
CAediting_1064114chr15_77465496_+SINEAluAluSz
CAediting_1064115chr15_77465521_+SINEAluAluSz
CAediting_1064116chr15_77465522_+SINEAluAluSz
CAediting_1064117chr15_77465525_+SINEAluAluSz
CAediting_1064118chr15_77465535_+SINEAluAluSz
CAediting_1064119chr15_77465562_+SINEAluAluSz
CAediting_1064120chr15_77465617_+SINEAluAluSz
CAediting_1064121chr15_77465630_+SINEAluAluSz
CAediting_1064122chr15_77465656_+SINEAluAluSz
CAediting_1064123chr15_77466166_+SINEAluAluSp
CAediting_1064124chr15_77466203_+SINEAluAluSp
CAediting_1064125chr15_77466335_+SINEAluAluSp
CAediting_1064126chr15_77466351_+SINEAluAluSp
CAediting_1064127chr15_77472338_+SINEAluAluSc8
CAediting_1064128chr15_77472378_+SINEAluAluSc8
CAediting_1064129chr15_77472481_+SINEAluAluSc8
CAediting_1064130chr15_77472536_+SINEAluAluSc8
CAediting_1064131chr15_77472537_+SINEAluAluSc8
CAediting_1064132chr15_77476226_+SINEAluAluSx1
CAediting_1064133chr15_77476227_+SINEAluAluSx1
CAediting_1064134chr15_77476253_+SINEAluAluSx1
CAediting_1064135chr15_77476320_+SINEAluAluSx1
CAediting_1064136chr15_77476321_+SINEAluAluSx1
CAediting_1064137chr15_77476322_+SINEAluAluSx1
CAediting_1064138chr15_77476328_+SINEAluAluSx1
CAediting_1064139chr15_77476338_+SINEAluAluSx1
CAediting_1064140chr15_77476342_+SINEAluAluSx1
CAediting_1064141chr15_77476364_+SINEAluAluSx1
CAediting_1064142chr15_77476365_+SINEAluAluSx1
CAediting_1064143chr15_77476387_+SINEAluAluSx1
CAediting_1064144chr15_77476394_+SINEAluAluSx1
CAediting_1064145chr15_77476405_+SINEAluAluSx1
CAediting_1064146chr15_77476406_+SINEAluAluSx1
CAediting_1064147chr15_77476417_+SINEAluAluSx1
CAediting_1064148chr15_77476426_+SINEAluAluSx1
CAediting_1064149chr15_77476430_+SINEAluAluSx1
CAediting_1064150chr15_77476467_+SINEAluAluSx1
CAediting_1064151chr15_77480054_+SINEAluAluJb
CAediting_1064152chr15_77480060_+SINEAluAluJb
CAediting_1064153chr15_77480193_+SINEAluAluJb
CAediting_1064154chr15_77480194_+SINEAluAluJb
CAediting_1064155chr15_77480195_+SINEAluAluJb
CAediting_1064156chr15_77480201_+SINEAluAluJb
CAediting_1064157chr15_77480352_+SINEAluAluJo
CAediting_1064158chr15_77480409_+SINEAluAluJo
CAediting_1064159chr15_77480410_+SINEAluAluJo
CAediting_1064160chr15_77480466_+SINEAluAluJo
CAediting_1064161chr15_77480506_+SINEAluAluJo

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RNA A-to-I editing events in the alternative splicing sites for HMG20A

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000140382.13.HMG20A.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000140382.13.HMG20A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HMG20A

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HMG20A

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for HMG20A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000140382.13ENST00000381714hsa-miR-624-3p77483576774835816mer7748356277483582146-22.84
CAediting_393chr1_1167164_+ENSG00000140382.13ENST00000381714hsa-miR-200b-3p77484944774849507mer-m87748493077484951159-15.97
CAediting_1229415chr17_67471547_+ENSG00000140382.13ENST00000381714hsa-miR-548aa77483639774836457mer-m87748362177483646162-22.1
CAediting_580943chr7_100356700_+ENSG00000140382.13ENST00000381714hsa-miR-6840-3p77483205774832117mer-m87748319277483212144-23.44
CAediting_468389chr6_31355314_-ENSG00000140382.13ENST00000381714hsa-miR-6891-5p77484903774849108mer-1a7748489177484910154-27.19
CAediting_468389chr6_31355314_-ENSG00000140382.13ENST00000381714hsa-miR-6891-5p77485223774852297mer-m87748521277485230149-21.11
CAediting_1524209chrX_134546392_-ENSG00000140382.13ENST00000381714hsa-miR-503-5p77483652774836576mer7748363677483658141-23.35

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228905chr2_188297554_+ENSG00000140382.13ENST00000381714hsa-miR-561-3p77485522774855287mer-m87748550877485529150-6.08
CAediting_228905chr2_188297554_+ENSG00000140382.13ENST00000381714hsa-miR-561-3p77485585774855917mer-m87748557177485592143-4.18
CAediting_1351755chr19_40282625_-ENSG00000140382.13ENST00000381714hsa-miR-64177483989774839946mer7748397177483995140-20.19
CAediting_1351755chr19_40282625_-ENSG00000140382.13ENST00000381714hsa-miR-64177484608774846158mer-1a7748458877484615149-12.94
CAediting_1351755chr19_40282625_-ENSG00000140382.13ENST00000381714hsa-miR-64177483776774837827mer-m87748375877483783151-11.58

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HMG20A

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for HMG20A

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for HMG20A

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for HMG20A

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for HMG20A

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HMG20A

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
HMG20AC0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human