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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: KANTR (CAeditome ID:102723508)

Gene summary for KANTR

check button Gene summary
Gene informationGene symbol

KANTR

Gene ID

102723508

Gene nameKDM5C adjacent transcript
SynonymsLINC01155|Spasm
Cytomap

Xp11.22

Type of genencRNA
DescriptionKDM5C adjacent non-coding transcriptlong intergenic non-protein coding RNA 1155
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for KANTR

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000232593.5

check button RNA A-to-I editing events in Cancer.
CAediting_1508424(53097058, +), CAediting_1508425(53097904, +), CAediting_1508426(53097957, +), CAediting_1508427(53097983, +), CAediting_1508428(53098006, +), CAediting_1508429(53098851, +), CAediting_1508430(53099314, +), CAediting_1508431(53100226, +), CAediting_1508432(53100544, +), CAediting_1508433(53100545, +), CAediting_1508434(53100612, +), CAediting_1508435(53100616, +), CAediting_1508436(53100622, +), CAediting_1508437(53100639, +), CAediting_1508438(53100677, +), CAediting_1508439(53100725, +), CAediting_1508440(53100730, +), CAediting_1508441(53100755, +), CAediting_1508442(53101335, +), CAediting_1508443(53101350, +), CAediting_1508444(53101351, +), CAediting_1508445(53106846, +), CAediting_1508446(53106862, +), CAediting_1508447(53106908, +), CAediting_1508448(53108800, +), CAediting_1508449(53108840, +), CAediting_1508450(53108930, +), CAediting_1508451(53118546, +), CAediting_1508452(53119879, +), CAediting_1508453(53119907, +), CAediting_1508454(53119924, +), CAediting_1508455(53119925, +), CAediting_1508456(53119957, +), CAediting_1508457(53131792, +), CAediting_1508458(53131795, +), CAediting_1508459(53131804, +), CAediting_1508460(53133269, +), CAediting_1508461(53133292, +), CAediting_1508462(53136926, +), CAediting_1508463(53138127, +), CAediting_1508464(53139100, +), CAediting_1508465(53139547, +), CAediting_1508466(53139557, +), CAediting_1508467(53139587, +), CAediting_1508468(53139727, +), CAediting_1508469(53140394, +), CAediting_1508470(53141880, +), CAediting_1508471(53142138, +), CAediting_1508472(53142163, +), CAediting_1508473(53142481, +), CAediting_1508474(53142490, +), CAediting_1508475(53142496, +), CAediting_1508476(53142574, +), CAediting_1508477(53142575, +), CAediting_1508478(53142576, +), CAediting_1508479(53142636, +), CAediting_1508480(53144139, +), CAediting_1508481(53144153, +), CAediting_1508482(53144185, +), CAediting_1508483(53144199, +), CAediting_1508484(53144207, +), CAediting_1508485(53144209, +), CAediting_1508486(53144224, +), CAediting_1508487(53144230, +), CAediting_1508488(53144233, +), CAediting_1508489(53144234, +), CAediting_1508490(53144236, +), CAediting_1508491(53144307, +), CAediting_1508492(53144320, +), CAediting_1508493(53144468, +), CAediting_1508494(53144573, +), CAediting_1508495(53150473, +), CAediting_1508496(53150494, +), CAediting_1508497(53150532, +), CAediting_1508498(53150577, +), CAediting_1508499(53150578, +), CAediting_1508500(53150598, +), CAediting_1508501(53150612, +), CAediting_1508502(53150621, +), CAediting_1508503(53150625, +), CAediting_1508504(53150626, +), CAediting_1508505(53152785, +), CAediting_1508506(53152809, +), CAediting_1508507(53154452, +), CAediting_1508508(53154689, +), CAediting_1508509(53154695, +), CAediting_1508510(53154731, +), CAediting_1508511(53154742, +), CAediting_1508512(53154748, +), CAediting_1508513(53155104, +), CAediting_1508514(53155117, +), CAediting_1508515(53155136, +), CAediting_1508516(53155141, +), CAediting_1508517(53155142, +), CAediting_1508518(53155143, +), CAediting_1508519(53155144, +), CAediting_1508520(53155147, +), CAediting_1508521(53155156, +), CAediting_1508522(53155165, +), CAediting_1508523(53155203, +), CAediting_1508524(53155235, +), CAediting_1508525(53155243, +), CAediting_1508526(53155249, +), CAediting_1508527(53155256, +), CAediting_1508528(53155325, +), CAediting_1508529(53158468, +), CAediting_1508530(53158477, +), CAediting_1508531(53158664, +),

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RNA editing positional annotations for KANTR using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1508424chrX_53097058_+ncRNA_intronic
CAediting_1508425chrX_53097904_+ncRNA_intronic
CAediting_1508426chrX_53097957_+ncRNA_intronic
CAediting_1508427chrX_53097983_+ncRNA_intronic
CAediting_1508428chrX_53098006_+ncRNA_intronic
CAediting_1508429chrX_53098851_+ncRNA_intronic
CAediting_1508430chrX_53099314_+ncRNA_intronic
CAediting_1508431chrX_53100226_+ncRNA_intronic
CAediting_1508432chrX_53100544_+ncRNA_intronic
CAediting_1508433chrX_53100545_+ncRNA_intronic
CAediting_1508434chrX_53100612_+ncRNA_intronic
CAediting_1508435chrX_53100616_+ncRNA_intronic
CAediting_1508436chrX_53100622_+ncRNA_intronic
CAediting_1508437chrX_53100639_+ncRNA_intronic
CAediting_1508438chrX_53100677_+ncRNA_intronic
CAediting_1508439chrX_53100725_+ncRNA_intronic
CAediting_1508440chrX_53100730_+ncRNA_intronic
CAediting_1508441chrX_53100755_+ncRNA_intronic
CAediting_1508442chrX_53101335_+ncRNA_intronic
CAediting_1508443chrX_53101350_+ncRNA_intronic
CAediting_1508444chrX_53101351_+ncRNA_intronic
CAediting_1508445chrX_53106846_+ncRNA_intronic
CAediting_1508446chrX_53106862_+ncRNA_intronic
CAediting_1508447chrX_53106908_+ncRNA_intronic
CAediting_1508448chrX_53108800_+ncRNA_intronic
CAediting_1508449chrX_53108840_+ncRNA_intronic
CAediting_1508450chrX_53108930_+ncRNA_intronic
CAediting_1508451chrX_53118546_+ncRNA_intronic
CAediting_1508452chrX_53119879_+ncRNA_intronic
CAediting_1508453chrX_53119907_+ncRNA_intronic
CAediting_1508454chrX_53119924_+ncRNA_intronic
CAediting_1508455chrX_53119925_+ncRNA_intronic
CAediting_1508456chrX_53119957_+ncRNA_intronic
CAediting_1508457chrX_53131792_+ncRNA_intronic
CAediting_1508458chrX_53131795_+ncRNA_intronic
CAediting_1508459chrX_53131804_+ncRNA_intronic
CAediting_1508460chrX_53133269_+ncRNA_intronic
CAediting_1508461chrX_53133292_+ncRNA_intronic
CAediting_1508462chrX_53136926_+ncRNA_intronic
CAediting_1508463chrX_53138127_+ncRNA_intronic
CAediting_1508464chrX_53139100_+ncRNA_intronic
CAediting_1508465chrX_53139547_+ncRNA_intronic
CAediting_1508466chrX_53139557_+ncRNA_intronic
CAediting_1508467chrX_53139587_+ncRNA_intronic
CAediting_1508468chrX_53139727_+ncRNA_intronic
CAediting_1508469chrX_53140394_+ncRNA_intronic
CAediting_1508470chrX_53141880_+ncRNA_exonic
CAediting_1508471chrX_53142138_+ncRNA_exonic
CAediting_1508472chrX_53142163_+ncRNA_exonic
CAediting_1508473chrX_53142481_+ncRNA_exonic
CAediting_1508474chrX_53142490_+ncRNA_exonic
CAediting_1508475chrX_53142496_+ncRNA_exonic
CAediting_1508476chrX_53142574_+ncRNA_exonic
CAediting_1508477chrX_53142575_+ncRNA_exonic
CAediting_1508478chrX_53142576_+ncRNA_exonic
CAediting_1508479chrX_53142636_+ncRNA_exonic
CAediting_1508480chrX_53144139_+ncRNA_intronic
CAediting_1508481chrX_53144153_+ncRNA_intronic
CAediting_1508482chrX_53144185_+ncRNA_intronic
CAediting_1508483chrX_53144199_+ncRNA_intronic
CAediting_1508484chrX_53144207_+ncRNA_intronic
CAediting_1508485chrX_53144209_+ncRNA_intronic
CAediting_1508486chrX_53144224_+ncRNA_intronic
CAediting_1508487chrX_53144230_+ncRNA_intronic
CAediting_1508488chrX_53144233_+ncRNA_intronic
CAediting_1508489chrX_53144234_+ncRNA_intronic
CAediting_1508490chrX_53144236_+ncRNA_intronic
CAediting_1508491chrX_53144307_+ncRNA_intronic
CAediting_1508492chrX_53144320_+ncRNA_intronic
CAediting_1508493chrX_53144468_+ncRNA_intronic
CAediting_1508494chrX_53144573_+ncRNA_intronic
CAediting_1508495chrX_53150473_+ncRNA_intronic
CAediting_1508496chrX_53150494_+ncRNA_intronic
CAediting_1508497chrX_53150532_+ncRNA_intronic
CAediting_1508498chrX_53150577_+ncRNA_intronic
CAediting_1508499chrX_53150578_+ncRNA_intronic
CAediting_1508500chrX_53150598_+ncRNA_intronic
CAediting_1508501chrX_53150612_+ncRNA_intronic
CAediting_1508502chrX_53150621_+ncRNA_intronic
CAediting_1508503chrX_53150625_+ncRNA_intronic
CAediting_1508504chrX_53150626_+ncRNA_intronic
CAediting_1508505chrX_53152785_+ncRNA_intronic
CAediting_1508506chrX_53152809_+ncRNA_intronic
CAediting_1508507chrX_53154452_+ncRNA_intronic
CAediting_1508508chrX_53154689_+ncRNA_intronic
CAediting_1508509chrX_53154695_+ncRNA_intronic
CAediting_1508510chrX_53154731_+ncRNA_intronic
CAediting_1508511chrX_53154742_+ncRNA_intronic
CAediting_1508512chrX_53154748_+ncRNA_intronic
CAediting_1508513chrX_53155104_+ncRNA_intronic
CAediting_1508514chrX_53155117_+ncRNA_intronic
CAediting_1508515chrX_53155136_+ncRNA_intronic
CAediting_1508516chrX_53155141_+ncRNA_intronic
CAediting_1508517chrX_53155142_+ncRNA_intronic
CAediting_1508518chrX_53155143_+ncRNA_intronic
CAediting_1508519chrX_53155144_+ncRNA_intronic
CAediting_1508520chrX_53155147_+ncRNA_intronic
CAediting_1508521chrX_53155156_+ncRNA_intronic
CAediting_1508522chrX_53155165_+ncRNA_intronic
CAediting_1508523chrX_53155203_+ncRNA_intronic
CAediting_1508524chrX_53155235_+ncRNA_intronic
CAediting_1508525chrX_53155243_+ncRNA_intronic
CAediting_1508526chrX_53155249_+ncRNA_intronic
CAediting_1508527chrX_53155256_+ncRNA_intronic
CAediting_1508528chrX_53155325_+ncRNA_intronic
CAediting_1508529chrX_53158468_+ncRNA_intronic
CAediting_1508530chrX_53158477_+ncRNA_intronic
CAediting_1508531chrX_53158664_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1508424chrX_53097058_+SINEAluAluSq
CAediting_1508425chrX_53097904_+SINEAluAluSx
CAediting_1508426chrX_53097957_+SINEAluAluSx
CAediting_1508427chrX_53097983_+SINEAluAluSx
CAediting_1508428chrX_53098006_+SINEAluAluSx
CAediting_1508429chrX_53098851_+SINEAluAluJr
CAediting_1508430chrX_53099314_+SINEAluAluSx1
CAediting_1508431chrX_53100226_+SINEAluAluSp
CAediting_1508432chrX_53100544_+SINEAluAluSq4
CAediting_1508433chrX_53100545_+SINEAluAluSq4
CAediting_1508434chrX_53100612_+SINEAluAluSq4
CAediting_1508435chrX_53100616_+SINEAluAluSq4
CAediting_1508436chrX_53100622_+SINEAluAluSq4
CAediting_1508437chrX_53100639_+SINEAluAluSq4
CAediting_1508438chrX_53100677_+SINEAluAluSq4
CAediting_1508439chrX_53100725_+SINEAluAluSq4
CAediting_1508440chrX_53100730_+SINEAluAluSq4
CAediting_1508441chrX_53100755_+SINEAluAluSq4
CAediting_1508442chrX_53101335_+SINEAluFLAM_C
CAediting_1508443chrX_53101350_+SINEAluFLAM_C
CAediting_1508444chrX_53101351_+SINEAluFLAM_C
CAediting_1508445chrX_53106846_+SINEAluFLAM_A
CAediting_1508446chrX_53106862_+SINEAluFLAM_A
CAediting_1508447chrX_53106908_+SINEAluFLAM_A
CAediting_1508448chrX_53108800_+SINEAluAluJr4
CAediting_1508449chrX_53108840_+SINEAluAluJr4
CAediting_1508450chrX_53108930_+SINEAluAluJr4
CAediting_1508451chrX_53118546_+SINEAluAluJb
CAediting_1508452chrX_53119879_+SINEAluAluJb
CAediting_1508453chrX_53119907_+SINEAluAluJb
CAediting_1508454chrX_53119924_+SINEAluAluJb
CAediting_1508455chrX_53119925_+SINEAluAluJb
CAediting_1508456chrX_53119957_+SINEAluAluJb
CAediting_1508457chrX_53131792_+LINEL1L1M4
CAediting_1508458chrX_53131795_+LINEL1L1M4
CAediting_1508459chrX_53131804_+LINEL1L1M4
CAediting_1508460chrX_53133269_+SINEAluAluJo
CAediting_1508461chrX_53133292_+SINEAluAluJo
CAediting_1508462chrX_53136926_+SINEAluAluSq2
CAediting_1508463chrX_53138127_+SINEAluAluSp
CAediting_1508464chrX_53139100_+SINEAluAluSz
CAediting_1508465chrX_53139547_+SINEAluAluJr4
CAediting_1508466chrX_53139557_+SINEAluAluJr4
CAediting_1508467chrX_53139587_+SINEAluAluJr4
CAediting_1508468chrX_53139727_+SINEAluAluJr4
CAediting_1508469chrX_53140394_+SINEAluAluSx1
CAediting_1508473chrX_53142481_+SINEAluAluSg
CAediting_1508474chrX_53142490_+SINEAluAluSg
CAediting_1508475chrX_53142496_+SINEAluAluSg
CAediting_1508476chrX_53142574_+SINEAluAluSg
CAediting_1508477chrX_53142575_+SINEAluAluSg
CAediting_1508478chrX_53142576_+SINEAluAluSg
CAediting_1508480chrX_53144139_+SINEAluAluSz6
CAediting_1508481chrX_53144153_+SINEAluAluSz6
CAediting_1508482chrX_53144185_+SINEAluAluSz6
CAediting_1508483chrX_53144199_+SINEAluAluSz6
CAediting_1508484chrX_53144207_+SINEAluAluSz6
CAediting_1508485chrX_53144209_+SINEAluAluSz6
CAediting_1508486chrX_53144224_+SINEAluAluSz6
CAediting_1508487chrX_53144230_+SINEAluAluSz6
CAediting_1508488chrX_53144233_+SINEAluAluSz6
CAediting_1508489chrX_53144234_+SINEAluAluSz6
CAediting_1508490chrX_53144236_+SINEAluAluSz6
CAediting_1508491chrX_53144307_+SINEAluAluSz6
CAediting_1508492chrX_53144320_+SINEAluAluSz6
CAediting_1508493chrX_53144468_+SINEAluAluSx
CAediting_1508494chrX_53144573_+SINEAluAluSx
CAediting_1508495chrX_53150473_+SINEAluAluJr
CAediting_1508496chrX_53150494_+SINEAluAluJr
CAediting_1508497chrX_53150532_+SINEAluAluJr
CAediting_1508498chrX_53150577_+SINEAluFAM
CAediting_1508499chrX_53150578_+SINEAluFAM
CAediting_1508500chrX_53150598_+SINEAluFAM
CAediting_1508501chrX_53150612_+SINEAluFAM
CAediting_1508502chrX_53150621_+SINEAluFAM
CAediting_1508503chrX_53150625_+SINEAluFAM
CAediting_1508504chrX_53150626_+SINEAluFAM
CAediting_1508505chrX_53152785_+LTRERVLERVL-int
CAediting_1508506chrX_53152809_+LTRERVLERVL-int
CAediting_1508507chrX_53154452_+SINEAluFLAM_C
CAediting_1508508chrX_53154689_+SINEAluAluSz
CAediting_1508509chrX_53154695_+SINEAluAluSz
CAediting_1508510chrX_53154731_+SINEAluAluSz
CAediting_1508511chrX_53154742_+SINEAluAluSz
CAediting_1508512chrX_53154748_+SINEAluAluSz
CAediting_1508513chrX_53155104_+SINEAluAluJr
CAediting_1508514chrX_53155117_+SINEAluAluJr
CAediting_1508515chrX_53155136_+SINEAluAluJr
CAediting_1508516chrX_53155141_+SINEAluAluJr
CAediting_1508517chrX_53155142_+SINEAluAluJr
CAediting_1508518chrX_53155143_+SINEAluAluJr
CAediting_1508519chrX_53155144_+SINEAluAluJr
CAediting_1508520chrX_53155147_+SINEAluAluJr
CAediting_1508521chrX_53155156_+SINEAluAluJr
CAediting_1508522chrX_53155165_+SINEAluAluJr
CAediting_1508523chrX_53155203_+SINEAluAluJr
CAediting_1508524chrX_53155235_+SINEAluAluJr
CAediting_1508525chrX_53155243_+SINEAluAluJr
CAediting_1508526chrX_53155249_+SINEAluAluJr
CAediting_1508527chrX_53155256_+SINEAluAluJr
CAediting_1508528chrX_53155325_+SINEAluAluJr
CAediting_1508529chrX_53158468_+SINEAluAluY
CAediting_1508530chrX_53158477_+SINEAluAluY
CAediting_1508531chrX_53158664_+SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for KANTR

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000232593.5.KANTR.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000232593.5.KANTR.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KANTR

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
BRCA.CAediting_1508471.ENSG00000232593.KANTR.png
Soverview

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Protein coding region RNA A-to-I editings for KANTR

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for KANTR

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for KANTR

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for KANTR

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for KANTR

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for KANTR

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for KANTR

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for KANTR

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource