|
Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples | |
The effects of the RNA editing to the stability of the RNA structures | |
Editing gene: DCAF7 (CAeditome ID:10238) |
Gene summary for DCAF7 |
Gene summary |
Gene information | Gene symbol | DCAF7 | Gene ID | 10238 |
Gene name | DDB1 and CUL4 associated factor 7 | |
Synonyms | AN11|HAN11|SWAN-1|WDR68 | |
Cytomap | 17q23.3 | |
Type of gene | protein-coding | |
Description | DDB1- and CUL4-associated factor 7WD repeat-containing protein 68WD repeat-containing protein An11 homologhuman anthocyaninseven-WD-repeat protein of the AN11 family-1 | |
Modification date | 20210518 | |
UniProtAcc | P61962 | |
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
DCAF7 | GO:0005654 | DDB1- and CUL4-associated factor 7 | 0000052 |
DCAF7 | GO:0005829 | DDB1- and CUL4-associated factor 7 | 0000052 |
DCAF7 | GO:0016363 | DDB1- and CUL4-associated factor 7 | 21328542 |
DCAF7 | GO:0016604 | DDB1- and CUL4-associated factor 7 | 0000052 |
DCAF7 | GO:0032991 | DDB1- and CUL4-associated factor 7 | 21328542 |
DCAF7 | GO:0080008 | DDB1- and CUL4-associated factor 7 | 16949367 |
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RNA A-to-I events for DCAF7 |
RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure. |
RNA editing frequencies across 33 cancers of gene: ENSG00000136485.13 |
RNA A-to-I editing events in Cancer. |
CAediting_1224274(63551783, +), CAediting_1224275(63551871, +), CAediting_1224276(63551957, +), CAediting_1224277(63552019, +), CAediting_1224278(63556298, +), CAediting_1224279(63556341, +), CAediting_1224280(63556405, +), CAediting_1224281(63556417, +), CAediting_1224282(63556448, +), CAediting_1224283(63556449, +), CAediting_1224284(63556613, +), CAediting_1224285(63556614, +), CAediting_1224286(63556691, +), CAediting_1224287(63556714, +), CAediting_1224288(63556747, +), CAediting_1224289(63556773, +), CAediting_1224290(63556867, +), CAediting_1224291(63556881, +), CAediting_1224292(63556894, +), CAediting_1224293(63556897, +), CAediting_1224294(63556901, +), CAediting_1224295(63556907, +), CAediting_1224296(63556921, +), CAediting_1224297(63556962, +), CAediting_1224298(63556977, +), CAediting_1224299(63557372, +), CAediting_1224300(63557388, +), CAediting_1224301(63557389, +), CAediting_1224302(63557415, +), CAediting_1224303(63557438, +), CAediting_1224304(63557459, +), CAediting_1224305(63557916, +), CAediting_1224306(63557920, +), CAediting_1224307(63557965, +), CAediting_1224308(63557989, +), CAediting_1224309(63558008, +), CAediting_1224310(63558025, +), CAediting_1224311(63558030, +), CAediting_1224312(63558061, +), CAediting_1224313(63558084, +), CAediting_1224314(63558104, +), CAediting_1224315(63558129, +), CAediting_1224316(63558141, +), CAediting_1224317(63558596, +), CAediting_1224318(63558607, +), CAediting_1224319(63558612, +), CAediting_1224320(63558618, +), CAediting_1224321(63558690, +), CAediting_1224322(63558691, +), CAediting_1224323(63558718, +), CAediting_1224324(63558738, +), CAediting_1224325(63559040, +), CAediting_1224326(63559100, +), CAediting_1224327(63559128, +), CAediting_1224328(63559149, +), CAediting_1224329(63559190, +), CAediting_1224330(63559191, +), CAediting_1224331(63559723, +), CAediting_1224332(63559727, +), CAediting_1224333(63561150, +), CAediting_1224334(63561186, +), CAediting_1224335(63561464, +), CAediting_1224336(63562877, +), CAediting_1224337(63562899, +), CAediting_1224338(63562918, +), CAediting_1224339(63562924, +), CAediting_1224340(63562925, +), CAediting_1224341(63562927, +), CAediting_1224342(63562937, +), CAediting_1224343(63562951, +), CAediting_1224344(63562958, +), CAediting_1224345(63562964, +), CAediting_1224346(63563028, +), CAediting_1224347(63563087, +), CAediting_1224348(63563090, +), CAediting_1224349(63563624, +), CAediting_1224350(63563664, +), CAediting_1224351(63563694, +), CAediting_1224352(63563730, +), CAediting_1224353(63563735, +), CAediting_1224354(63563736, +), CAediting_1224355(63565845, +), CAediting_1224356(63565876, +), CAediting_1224357(63565877, +), CAediting_1224358(63565878, +), CAediting_1224359(63565981, +), CAediting_1224360(63565998, +), CAediting_1224361(63565999, +), CAediting_1224362(63566007, +), CAediting_1224363(63566026, +), CAediting_1224364(63566250, +), CAediting_1224365(63566256, +), CAediting_1224366(63566277, +), CAediting_1224367(63566796, +), CAediting_1224368(63567024, +), CAediting_1224369(63567039, +), CAediting_1224370(63567065, +), CAediting_1224371(63567684, +), CAediting_1224372(63567691, +), CAediting_1224373(63567729, +), CAediting_1224374(63567772, +), CAediting_1224375(63567790, +), CAediting_1224376(63567799, +), CAediting_1224377(63568101, +), CAediting_1224378(63568278, +), CAediting_1224379(63568437, +), CAediting_1224380(63568717, +), CAediting_1224381(63569771, +), CAediting_1224382(63569852, +), CAediting_1224383(63569868, +), CAediting_1224384(63570176, +), CAediting_1224385(63570239, +), CAediting_1224386(63570244, +), CAediting_1224387(63570275, +), CAediting_1224388(63570292, +), CAediting_1224389(63570303, +), CAediting_1224390(63570307, +), CAediting_1224391(63570333, +), CAediting_1224392(63570334, +), CAediting_1224393(63570343, +), CAediting_1224394(63570383, +), CAediting_1224395(63571066, +), CAediting_1224396(63571111, +), CAediting_1224397(63571135, +), CAediting_1224398(63572787, +), CAediting_1224399(63572824, +), CAediting_1224400(63572837, +), CAediting_1224401(63572842, +), CAediting_1224402(63572856, +), CAediting_1224403(63572863, +), CAediting_1224404(63572864, +), CAediting_1224405(63572875, +), CAediting_1224406(63572880, +), CAediting_1224407(63572946, +), CAediting_1224408(63572963, +), CAediting_1224409(63572972, +), CAediting_1224410(63572977, +), CAediting_1224411(63572998, +), CAediting_1224412(63573037, +), CAediting_1224413(63573469, +), CAediting_1224414(63573470, +), CAediting_1224415(63573491, +), CAediting_1224416(63573583, +), CAediting_1224417(63573609, +), CAediting_1224418(63573610, +), CAediting_1224419(63573649, +), CAediting_1224420(63573679, +), CAediting_1224421(63574701, +), CAediting_1224422(63574771, +), CAediting_1224423(63574772, +), CAediting_1224424(63574898, +), CAediting_1224425(63575275, +), CAediting_1224426(63575459, +), CAediting_1224427(63575509, +), CAediting_1224428(63575521, +), CAediting_1224429(63576833, +), CAediting_1224430(63576834, +), CAediting_1224431(63585936, +), CAediting_1224432(63586004, +), CAediting_1224433(63586010, +), CAediting_1224434(63586014, +), CAediting_1224435(63586018, +), CAediting_1224436(63586040, +), CAediting_1224437(63586045, +), CAediting_1224438(63586050, +), CAediting_1224439(63586615, +), CAediting_1224440(63587843, +), CAediting_1224441(63587865, +), CAediting_1224442(63587866, +), CAediting_1224443(63587871, +), CAediting_1224444(63587892, +), CAediting_1224445(63587898, +), CAediting_1224446(63587906, +), CAediting_1224447(63587907, +), CAediting_1224448(63587955, +), CAediting_1224449(63587956, +), CAediting_1224450(63587965, +), CAediting_1224451(63588449, +), CAediting_1224452(63592139, +), CAediting_1224453(63592141, +), CAediting_1224454(63592147, +), CAediting_1224455(63592148, +), CAediting_1224456(63592178, +), CAediting_1224457(63592191, +), CAediting_1224458(63592194, +), CAediting_1224459(63592214, +), CAediting_1224460(63592215, +), CAediting_1224461(63592223, +), CAediting_1224462(63592224, +), CAediting_1224463(63592225, +), CAediting_1224464(63592230, +), CAediting_1224465(63592258, +), CAediting_1224466(63592294, +), |
Top |
RNA editing positional annotations for DCAF7 using Annovar |
Protein coding RNA editing(s). |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
CAeditome ID | Position | Variant type |
CAediting_1224274 | chr17_63551783_+ | ncRNA_intronic |
CAediting_1224275 | chr17_63551871_+ | ncRNA_intronic |
CAediting_1224276 | chr17_63551957_+ | ncRNA_intronic |
CAediting_1224277 | chr17_63552019_+ | ncRNA_intronic |
CAediting_1224278 | chr17_63556298_+ | intronic |
CAediting_1224279 | chr17_63556341_+ | intronic |
CAediting_1224280 | chr17_63556405_+ | intronic |
CAediting_1224281 | chr17_63556417_+ | intronic |
CAediting_1224282 | chr17_63556448_+ | intronic |
CAediting_1224283 | chr17_63556449_+ | intronic |
CAediting_1224284 | chr17_63556613_+ | intronic |
CAediting_1224285 | chr17_63556614_+ | intronic |
CAediting_1224286 | chr17_63556691_+ | intronic |
CAediting_1224287 | chr17_63556714_+ | intronic |
CAediting_1224288 | chr17_63556747_+ | intronic |
CAediting_1224289 | chr17_63556773_+ | intronic |
CAediting_1224290 | chr17_63556867_+ | intronic |
CAediting_1224291 | chr17_63556881_+ | intronic |
CAediting_1224292 | chr17_63556894_+ | intronic |
CAediting_1224293 | chr17_63556897_+ | intronic |
CAediting_1224294 | chr17_63556901_+ | intronic |
CAediting_1224295 | chr17_63556907_+ | intronic |
CAediting_1224296 | chr17_63556921_+ | intronic |
CAediting_1224297 | chr17_63556962_+ | intronic |
CAediting_1224298 | chr17_63556977_+ | intronic |
CAediting_1224299 | chr17_63557372_+ | intronic |
CAediting_1224300 | chr17_63557388_+ | intronic |
CAediting_1224301 | chr17_63557389_+ | intronic |
CAediting_1224302 | chr17_63557415_+ | intronic |
CAediting_1224303 | chr17_63557438_+ | intronic |
CAediting_1224304 | chr17_63557459_+ | intronic |
CAediting_1224305 | chr17_63557916_+ | intronic |
CAediting_1224306 | chr17_63557920_+ | intronic |
CAediting_1224307 | chr17_63557965_+ | intronic |
CAediting_1224308 | chr17_63557989_+ | intronic |
CAediting_1224309 | chr17_63558008_+ | intronic |
CAediting_1224310 | chr17_63558025_+ | intronic |
CAediting_1224311 | chr17_63558030_+ | intronic |
CAediting_1224312 | chr17_63558061_+ | intronic |
CAediting_1224313 | chr17_63558084_+ | intronic |
CAediting_1224314 | chr17_63558104_+ | intronic |
CAediting_1224315 | chr17_63558129_+ | intronic |
CAediting_1224316 | chr17_63558141_+ | intronic |
CAediting_1224317 | chr17_63558596_+ | intronic |
CAediting_1224318 | chr17_63558607_+ | intronic |
CAediting_1224319 | chr17_63558612_+ | intronic |
CAediting_1224320 | chr17_63558618_+ | intronic |
CAediting_1224321 | chr17_63558690_+ | intronic |
CAediting_1224322 | chr17_63558691_+ | intronic |
CAediting_1224323 | chr17_63558718_+ | intronic |
CAediting_1224324 | chr17_63558738_+ | intronic |
CAediting_1224325 | chr17_63559040_+ | intronic |
CAediting_1224326 | chr17_63559100_+ | intronic |
CAediting_1224327 | chr17_63559128_+ | intronic |
CAediting_1224328 | chr17_63559149_+ | intronic |
CAediting_1224329 | chr17_63559190_+ | intronic |
CAediting_1224330 | chr17_63559191_+ | intronic |
CAediting_1224331 | chr17_63559723_+ | intronic |
CAediting_1224332 | chr17_63559727_+ | intronic |
CAediting_1224333 | chr17_63561150_+ | intronic |
CAediting_1224334 | chr17_63561186_+ | intronic |
CAediting_1224335 | chr17_63561464_+ | intronic |
CAediting_1224336 | chr17_63562877_+ | intronic |
CAediting_1224337 | chr17_63562899_+ | intronic |
CAediting_1224338 | chr17_63562918_+ | intronic |
CAediting_1224339 | chr17_63562924_+ | intronic |
CAediting_1224340 | chr17_63562925_+ | intronic |
CAediting_1224341 | chr17_63562927_+ | intronic |
CAediting_1224342 | chr17_63562937_+ | intronic |
CAediting_1224343 | chr17_63562951_+ | intronic |
CAediting_1224344 | chr17_63562958_+ | intronic |
CAediting_1224345 | chr17_63562964_+ | intronic |
CAediting_1224346 | chr17_63563028_+ | intronic |
CAediting_1224347 | chr17_63563087_+ | intronic |
CAediting_1224348 | chr17_63563090_+ | intronic |
CAediting_1224349 | chr17_63563624_+ | intronic |
CAediting_1224350 | chr17_63563664_+ | intronic |
CAediting_1224351 | chr17_63563694_+ | intronic |
CAediting_1224352 | chr17_63563730_+ | intronic |
CAediting_1224353 | chr17_63563735_+ | intronic |
CAediting_1224354 | chr17_63563736_+ | intronic |
CAediting_1224355 | chr17_63565845_+ | intronic |
CAediting_1224356 | chr17_63565876_+ | intronic |
CAediting_1224357 | chr17_63565877_+ | intronic |
CAediting_1224358 | chr17_63565878_+ | intronic |
CAediting_1224359 | chr17_63565981_+ | intronic |
CAediting_1224360 | chr17_63565998_+ | intronic |
CAediting_1224361 | chr17_63565999_+ | intronic |
CAediting_1224362 | chr17_63566007_+ | intronic |
CAediting_1224363 | chr17_63566026_+ | intronic |
CAediting_1224364 | chr17_63566250_+ | intronic |
CAediting_1224365 | chr17_63566256_+ | intronic |
CAediting_1224366 | chr17_63566277_+ | intronic |
CAediting_1224367 | chr17_63566796_+ | intronic |
CAediting_1224368 | chr17_63567024_+ | intronic |
CAediting_1224369 | chr17_63567039_+ | intronic |
CAediting_1224370 | chr17_63567065_+ | intronic |
CAediting_1224371 | chr17_63567684_+ | intronic |
CAediting_1224372 | chr17_63567691_+ | intronic |
CAediting_1224373 | chr17_63567729_+ | intronic |
CAediting_1224374 | chr17_63567772_+ | intronic |
CAediting_1224375 | chr17_63567790_+ | intronic |
CAediting_1224376 | chr17_63567799_+ | intronic |
CAediting_1224377 | chr17_63568101_+ | intronic |
CAediting_1224378 | chr17_63568278_+ | intronic |
CAediting_1224379 | chr17_63568437_+ | intronic |
CAediting_1224380 | chr17_63568717_+ | intronic |
CAediting_1224381 | chr17_63569771_+ | intronic |
CAediting_1224382 | chr17_63569852_+ | intronic |
CAediting_1224383 | chr17_63569868_+ | intronic |
CAediting_1224384 | chr17_63570176_+ | intronic |
CAediting_1224385 | chr17_63570239_+ | intronic |
CAediting_1224386 | chr17_63570244_+ | intronic |
CAediting_1224387 | chr17_63570275_+ | intronic |
CAediting_1224388 | chr17_63570292_+ | intronic |
CAediting_1224389 | chr17_63570303_+ | intronic |
CAediting_1224390 | chr17_63570307_+ | intronic |
CAediting_1224391 | chr17_63570333_+ | intronic |
CAediting_1224392 | chr17_63570334_+ | intronic |
CAediting_1224393 | chr17_63570343_+ | intronic |
CAediting_1224394 | chr17_63570383_+ | intronic |
CAediting_1224395 | chr17_63571066_+ | intronic |
CAediting_1224396 | chr17_63571111_+ | intronic |
CAediting_1224397 | chr17_63571135_+ | intronic |
CAediting_1224398 | chr17_63572787_+ | intronic |
CAediting_1224399 | chr17_63572824_+ | intronic |
CAediting_1224400 | chr17_63572837_+ | intronic |
CAediting_1224401 | chr17_63572842_+ | intronic |
CAediting_1224402 | chr17_63572856_+ | intronic |
CAediting_1224403 | chr17_63572863_+ | intronic |
CAediting_1224404 | chr17_63572864_+ | intronic |
CAediting_1224405 | chr17_63572875_+ | intronic |
CAediting_1224406 | chr17_63572880_+ | intronic |
CAediting_1224407 | chr17_63572946_+ | intronic |
CAediting_1224408 | chr17_63572963_+ | intronic |
CAediting_1224409 | chr17_63572972_+ | intronic |
CAediting_1224410 | chr17_63572977_+ | intronic |
CAediting_1224411 | chr17_63572998_+ | intronic |
CAediting_1224412 | chr17_63573037_+ | intronic |
CAediting_1224413 | chr17_63573469_+ | intronic |
CAediting_1224414 | chr17_63573470_+ | intronic |
CAediting_1224415 | chr17_63573491_+ | intronic |
CAediting_1224416 | chr17_63573583_+ | intronic |
CAediting_1224417 | chr17_63573609_+ | intronic |
CAediting_1224418 | chr17_63573610_+ | intronic |
CAediting_1224419 | chr17_63573649_+ | intronic |
CAediting_1224420 | chr17_63573679_+ | intronic |
CAediting_1224421 | chr17_63574701_+ | intronic |
CAediting_1224422 | chr17_63574771_+ | intronic |
CAediting_1224423 | chr17_63574772_+ | intronic |
CAediting_1224424 | chr17_63574898_+ | intronic |
CAediting_1224425 | chr17_63575275_+ | intronic |
CAediting_1224426 | chr17_63575459_+ | intronic |
CAediting_1224427 | chr17_63575509_+ | intronic |
CAediting_1224428 | chr17_63575521_+ | intronic |
CAediting_1224429 | chr17_63576833_+ | intronic |
CAediting_1224430 | chr17_63576834_+ | intronic |
CAediting_1224431 | chr17_63585936_+ | intronic |
CAediting_1224432 | chr17_63586004_+ | intronic |
CAediting_1224433 | chr17_63586010_+ | intronic |
CAediting_1224434 | chr17_63586014_+ | intronic |
CAediting_1224435 | chr17_63586018_+ | intronic |
CAediting_1224436 | chr17_63586040_+ | intronic |
CAediting_1224437 | chr17_63586045_+ | intronic |
CAediting_1224438 | chr17_63586050_+ | intronic |
CAediting_1224439 | chr17_63586615_+ | intronic |
CAediting_1224440 | chr17_63587843_+ | intronic |
CAediting_1224441 | chr17_63587865_+ | intronic |
CAediting_1224442 | chr17_63587866_+ | intronic |
CAediting_1224443 | chr17_63587871_+ | intronic |
CAediting_1224444 | chr17_63587892_+ | intronic |
CAediting_1224445 | chr17_63587898_+ | intronic |
CAediting_1224446 | chr17_63587906_+ | intronic |
CAediting_1224447 | chr17_63587907_+ | intronic |
CAediting_1224448 | chr17_63587955_+ | intronic |
CAediting_1224449 | chr17_63587956_+ | intronic |
CAediting_1224450 | chr17_63587965_+ | intronic |
CAediting_1224451 | chr17_63588449_+ | intronic |
CAediting_1224452 | chr17_63592139_+ | ncRNA_intronic |
CAediting_1224453 | chr17_63592141_+ | ncRNA_intronic |
CAediting_1224454 | chr17_63592147_+ | ncRNA_intronic |
CAediting_1224455 | chr17_63592148_+ | ncRNA_intronic |
CAediting_1224456 | chr17_63592178_+ | ncRNA_intronic |
CAediting_1224457 | chr17_63592191_+ | ncRNA_intronic |
CAediting_1224458 | chr17_63592194_+ | ncRNA_intronic |
CAediting_1224459 | chr17_63592214_+ | ncRNA_intronic |
CAediting_1224460 | chr17_63592215_+ | ncRNA_intronic |
CAediting_1224461 | chr17_63592223_+ | ncRNA_intronic |
CAediting_1224462 | chr17_63592224_+ | ncRNA_intronic |
CAediting_1224463 | chr17_63592225_+ | ncRNA_intronic |
CAediting_1224464 | chr17_63592230_+ | ncRNA_intronic |
CAediting_1224465 | chr17_63592258_+ | ncRNA_intronic |
CAediting_1224466 | chr17_63592294_+ | ncRNA_intronic |
Repat-regional RNA editing(s). |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1224274 | chr17_63551783_+ | SINE | Alu | AluSx |
CAediting_1224275 | chr17_63551871_+ | SINE | Alu | AluSx |
CAediting_1224276 | chr17_63551957_+ | SINE | Alu | AluSx |
CAediting_1224277 | chr17_63552019_+ | SINE | Alu | AluSx |
CAediting_1224278 | chr17_63556298_+ | SINE | Alu | AluSx |
CAediting_1224279 | chr17_63556341_+ | SINE | Alu | AluSx |
CAediting_1224280 | chr17_63556405_+ | SINE | Alu | AluSx |
CAediting_1224281 | chr17_63556417_+ | SINE | Alu | AluSx |
CAediting_1224282 | chr17_63556448_+ | SINE | Alu | AluSx |
CAediting_1224283 | chr17_63556449_+ | SINE | Alu | AluSx |
CAediting_1224284 | chr17_63556613_+ | SINE | Alu | AluSg |
CAediting_1224285 | chr17_63556614_+ | SINE | Alu | AluSg |
CAediting_1224286 | chr17_63556691_+ | SINE | Alu | AluSg |
CAediting_1224287 | chr17_63556714_+ | SINE | Alu | AluSg |
CAediting_1224288 | chr17_63556747_+ | SINE | Alu | AluSg |
CAediting_1224289 | chr17_63556773_+ | SINE | Alu | AluSg |
CAediting_1224290 | chr17_63556867_+ | SINE | Alu | AluSg |
CAediting_1224291 | chr17_63556881_+ | SINE | Alu | AluJb |
CAediting_1224292 | chr17_63556894_+ | SINE | Alu | AluJb |
CAediting_1224293 | chr17_63556897_+ | SINE | Alu | AluJb |
CAediting_1224294 | chr17_63556901_+ | SINE | Alu | AluJb |
CAediting_1224295 | chr17_63556907_+ | SINE | Alu | AluJb |
CAediting_1224296 | chr17_63556921_+ | SINE | Alu | AluJb |
CAediting_1224297 | chr17_63556962_+ | SINE | Alu | AluJb |
CAediting_1224298 | chr17_63556977_+ | SINE | Alu | AluJb |
CAediting_1224299 | chr17_63557372_+ | SINE | Alu | AluSx |
CAediting_1224300 | chr17_63557388_+ | SINE | Alu | AluSx |
CAediting_1224301 | chr17_63557389_+ | SINE | Alu | AluSx |
CAediting_1224302 | chr17_63557415_+ | SINE | Alu | AluSx |
CAediting_1224303 | chr17_63557438_+ | SINE | Alu | AluSx |
CAediting_1224304 | chr17_63557459_+ | SINE | Alu | AluSx |
CAediting_1224305 | chr17_63557916_+ | SINE | Alu | AluJb |
CAediting_1224306 | chr17_63557920_+ | SINE | Alu | AluJb |
CAediting_1224307 | chr17_63557965_+ | SINE | Alu | AluJb |
CAediting_1224308 | chr17_63557989_+ | SINE | Alu | AluJb |
CAediting_1224309 | chr17_63558008_+ | SINE | Alu | AluJb |
CAediting_1224310 | chr17_63558025_+ | SINE | Alu | AluJb |
CAediting_1224311 | chr17_63558030_+ | SINE | Alu | AluJb |
CAediting_1224312 | chr17_63558061_+ | SINE | Alu | AluJb |
CAediting_1224313 | chr17_63558084_+ | SINE | Alu | AluJb |
CAediting_1224314 | chr17_63558104_+ | SINE | Alu | AluJb |
CAediting_1224315 | chr17_63558129_+ | SINE | Alu | AluJb |
CAediting_1224316 | chr17_63558141_+ | SINE | Alu | AluJb |
CAediting_1224317 | chr17_63558596_+ | SINE | Alu | AluJr4 |
CAediting_1224318 | chr17_63558607_+ | SINE | Alu | AluJr4 |
CAediting_1224319 | chr17_63558612_+ | SINE | Alu | AluJr4 |
CAediting_1224320 | chr17_63558618_+ | SINE | Alu | AluJr4 |
CAediting_1224321 | chr17_63558690_+ | SINE | Alu | AluJr |
CAediting_1224322 | chr17_63558691_+ | SINE | Alu | AluJr |
CAediting_1224323 | chr17_63558718_+ | SINE | Alu | AluJr |
CAediting_1224324 | chr17_63558738_+ | SINE | Alu | AluJr |
CAediting_1224325 | chr17_63559040_+ | SINE | Alu | AluSx3 |
CAediting_1224326 | chr17_63559100_+ | SINE | Alu | AluSx3 |
CAediting_1224327 | chr17_63559128_+ | SINE | Alu | AluSx3 |
CAediting_1224328 | chr17_63559149_+ | SINE | Alu | AluSx3 |
CAediting_1224329 | chr17_63559190_+ | SINE | Alu | AluSx3 |
CAediting_1224330 | chr17_63559191_+ | SINE | Alu | AluSx3 |
CAediting_1224331 | chr17_63559723_+ | SINE | Alu | AluSx1 |
CAediting_1224332 | chr17_63559727_+ | SINE | Alu | AluSx1 |
CAediting_1224333 | chr17_63561150_+ | SINE | Alu | AluSz |
CAediting_1224334 | chr17_63561186_+ | SINE | Alu | AluSz |
CAediting_1224335 | chr17_63561464_+ | SINE | Alu | AluJb |
CAediting_1224336 | chr17_63562877_+ | SINE | Alu | AluJb |
CAediting_1224337 | chr17_63562899_+ | SINE | Alu | AluJb |
CAediting_1224338 | chr17_63562918_+ | SINE | Alu | AluJb |
CAediting_1224339 | chr17_63562924_+ | SINE | Alu | AluJb |
CAediting_1224340 | chr17_63562925_+ | SINE | Alu | AluJb |
CAediting_1224341 | chr17_63562927_+ | SINE | Alu | AluJb |
CAediting_1224342 | chr17_63562937_+ | SINE | Alu | AluJb |
CAediting_1224343 | chr17_63562951_+ | SINE | Alu | AluJb |
CAediting_1224344 | chr17_63562958_+ | SINE | Alu | AluJb |
CAediting_1224345 | chr17_63562964_+ | SINE | Alu | AluJb |
CAediting_1224346 | chr17_63563028_+ | SINE | Alu | AluJb |
CAediting_1224347 | chr17_63563087_+ | SINE | Alu | AluJb |
CAediting_1224348 | chr17_63563090_+ | SINE | Alu | AluJb |
CAediting_1224349 | chr17_63563624_+ | SINE | Alu | AluSx3 |
CAediting_1224350 | chr17_63563664_+ | SINE | Alu | AluSx3 |
CAediting_1224351 | chr17_63563694_+ | SINE | Alu | AluSx3 |
CAediting_1224352 | chr17_63563730_+ | SINE | Alu | AluSx3 |
CAediting_1224353 | chr17_63563735_+ | SINE | Alu | AluSx3 |
CAediting_1224354 | chr17_63563736_+ | SINE | Alu | AluSx3 |
CAediting_1224355 | chr17_63565845_+ | SINE | Alu | AluSz |
CAediting_1224356 | chr17_63565876_+ | SINE | Alu | AluSz |
CAediting_1224357 | chr17_63565877_+ | SINE | Alu | AluSz |
CAediting_1224358 | chr17_63565878_+ | SINE | Alu | AluSz |
CAediting_1224359 | chr17_63565981_+ | SINE | Alu | AluSz |
CAediting_1224360 | chr17_63565998_+ | SINE | Alu | AluSz |
CAediting_1224361 | chr17_63565999_+ | SINE | Alu | AluSz |
CAediting_1224362 | chr17_63566007_+ | SINE | Alu | AluSz |
CAediting_1224363 | chr17_63566026_+ | SINE | Alu | AluSz |
CAediting_1224364 | chr17_63566250_+ | SINE | Alu | AluYk3 |
CAediting_1224365 | chr17_63566256_+ | SINE | Alu | AluYk3 |
CAediting_1224366 | chr17_63566277_+ | SINE | Alu | AluYk3 |
CAediting_1224367 | chr17_63566796_+ | SINE | Alu | AluJb |
CAediting_1224368 | chr17_63567024_+ | SINE | Alu | FLAM_C |
CAediting_1224369 | chr17_63567039_+ | SINE | Alu | FLAM_C |
CAediting_1224370 | chr17_63567065_+ | SINE | Alu | FLAM_C |
CAediting_1224371 | chr17_63567684_+ | SINE | Alu | AluJb |
CAediting_1224372 | chr17_63567691_+ | SINE | Alu | AluJb |
CAediting_1224373 | chr17_63567729_+ | SINE | Alu | AluJb |
CAediting_1224374 | chr17_63567772_+ | SINE | Alu | AluJb |
CAediting_1224375 | chr17_63567790_+ | SINE | Alu | AluJb |
CAediting_1224376 | chr17_63567799_+ | SINE | Alu | AluJb |
CAediting_1224377 | chr17_63568101_+ | SINE | Alu | AluSz |
CAediting_1224378 | chr17_63568278_+ | SINE | Alu | AluSz |
CAediting_1224379 | chr17_63568437_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_1224380 | chr17_63568717_+ | LTR | ERVL-MaLR | MLT1O |
CAediting_1224381 | chr17_63569771_+ | SINE | Alu | AluSx |
CAediting_1224382 | chr17_63569852_+ | SINE | Alu | AluSx |
CAediting_1224383 | chr17_63569868_+ | SINE | Alu | AluSx |
CAediting_1224384 | chr17_63570176_+ | SINE | Alu | AluSz6 |
CAediting_1224385 | chr17_63570239_+ | SINE | Alu | AluSz6 |
CAediting_1224386 | chr17_63570244_+ | SINE | Alu | AluSz6 |
CAediting_1224387 | chr17_63570275_+ | SINE | Alu | AluSz6 |
CAediting_1224388 | chr17_63570292_+ | SINE | Alu | AluSz6 |
CAediting_1224389 | chr17_63570303_+ | SINE | Alu | AluSz6 |
CAediting_1224390 | chr17_63570307_+ | SINE | Alu | AluSz6 |
CAediting_1224391 | chr17_63570333_+ | SINE | Alu | AluSz6 |
CAediting_1224392 | chr17_63570334_+ | SINE | Alu | AluSz6 |
CAediting_1224393 | chr17_63570343_+ | SINE | Alu | AluSz6 |
CAediting_1224394 | chr17_63570383_+ | SINE | Alu | AluSz6 |
CAediting_1224395 | chr17_63571066_+ | SINE | Alu | AluSx1 |
CAediting_1224396 | chr17_63571111_+ | SINE | Alu | AluSx1 |
CAediting_1224397 | chr17_63571135_+ | SINE | Alu | AluSx1 |
CAediting_1224398 | chr17_63572787_+ | SINE | Alu | AluJb |
CAediting_1224399 | chr17_63572824_+ | SINE | Alu | AluJb |
CAediting_1224400 | chr17_63572837_+ | SINE | Alu | AluJb |
CAediting_1224401 | chr17_63572842_+ | SINE | Alu | AluJb |
CAediting_1224402 | chr17_63572856_+ | SINE | Alu | AluJb |
CAediting_1224403 | chr17_63572863_+ | SINE | Alu | AluJb |
CAediting_1224404 | chr17_63572864_+ | SINE | Alu | AluJb |
CAediting_1224405 | chr17_63572875_+ | SINE | Alu | AluJb |
CAediting_1224406 | chr17_63572880_+ | SINE | Alu | AluJb |
CAediting_1224407 | chr17_63572946_+ | SINE | Alu | AluJb |
CAediting_1224408 | chr17_63572963_+ | SINE | Alu | AluJb |
CAediting_1224409 | chr17_63572972_+ | SINE | Alu | AluJb |
CAediting_1224410 | chr17_63572977_+ | SINE | Alu | AluJb |
CAediting_1224411 | chr17_63572998_+ | SINE | Alu | AluJb |
CAediting_1224412 | chr17_63573037_+ | SINE | Alu | AluJb |
CAediting_1224413 | chr17_63573469_+ | SINE | Alu | AluSq2 |
CAediting_1224414 | chr17_63573470_+ | SINE | Alu | AluSq2 |
CAediting_1224415 | chr17_63573491_+ | SINE | Alu | AluSq2 |
CAediting_1224416 | chr17_63573583_+ | SINE | Alu | AluSq2 |
CAediting_1224417 | chr17_63573609_+ | SINE | Alu | AluSq2 |
CAediting_1224418 | chr17_63573610_+ | SINE | Alu | AluSq2 |
CAediting_1224419 | chr17_63573649_+ | SINE | Alu | AluSq2 |
CAediting_1224420 | chr17_63573679_+ | SINE | Alu | AluSq2 |
CAediting_1224421 | chr17_63574701_+ | SINE | Alu | AluJb |
CAediting_1224422 | chr17_63574771_+ | SINE | Alu | AluJb |
CAediting_1224423 | chr17_63574772_+ | SINE | Alu | AluJb |
CAediting_1224424 | chr17_63574898_+ | SINE | Alu | AluJb |
CAediting_1224425 | chr17_63575275_+ | SINE | Alu | AluSz |
CAediting_1224426 | chr17_63575459_+ | SINE | Alu | AluSz6 |
CAediting_1224427 | chr17_63575509_+ | SINE | Alu | AluSz6 |
CAediting_1224428 | chr17_63575521_+ | SINE | Alu | AluSz6 |
CAediting_1224429 | chr17_63576833_+ | SINE | Alu | AluJo |
CAediting_1224430 | chr17_63576834_+ | SINE | Alu | AluJo |
CAediting_1224431 | chr17_63585936_+ | SINE | Alu | AluSx |
CAediting_1224432 | chr17_63586004_+ | SINE | Alu | AluSx |
CAediting_1224433 | chr17_63586010_+ | SINE | Alu | AluSx |
CAediting_1224434 | chr17_63586014_+ | SINE | Alu | AluSx |
CAediting_1224435 | chr17_63586018_+ | SINE | Alu | AluSx |
CAediting_1224436 | chr17_63586040_+ | SINE | Alu | AluSx |
CAediting_1224437 | chr17_63586045_+ | SINE | Alu | AluSx |
CAediting_1224438 | chr17_63586050_+ | SINE | Alu | AluSx |
CAediting_1224439 | chr17_63586615_+ | SINE | Alu | AluSc |
CAediting_1224440 | chr17_63587843_+ | SINE | Alu | AluSx |
CAediting_1224441 | chr17_63587865_+ | SINE | Alu | AluSx |
CAediting_1224442 | chr17_63587866_+ | SINE | Alu | AluSx |
CAediting_1224443 | chr17_63587871_+ | SINE | Alu | AluSx |
CAediting_1224444 | chr17_63587892_+ | SINE | Alu | AluSx |
CAediting_1224445 | chr17_63587898_+ | SINE | Alu | AluSx |
CAediting_1224446 | chr17_63587906_+ | SINE | Alu | AluSx |
CAediting_1224447 | chr17_63587907_+ | SINE | Alu | AluSx |
CAediting_1224448 | chr17_63587955_+ | SINE | Alu | AluSx |
CAediting_1224449 | chr17_63587956_+ | SINE | Alu | AluSx |
CAediting_1224450 | chr17_63587965_+ | SINE | Alu | AluSx |
CAediting_1224451 | chr17_63588449_+ | SINE | Alu | AluSx |
CAediting_1224452 | chr17_63592139_+ | SINE | Alu | AluY |
CAediting_1224453 | chr17_63592141_+ | SINE | Alu | AluY |
CAediting_1224454 | chr17_63592147_+ | SINE | Alu | AluY |
CAediting_1224455 | chr17_63592148_+ | SINE | Alu | AluY |
CAediting_1224456 | chr17_63592178_+ | SINE | Alu | AluY |
CAediting_1224457 | chr17_63592191_+ | SINE | Alu | AluY |
CAediting_1224458 | chr17_63592194_+ | SINE | Alu | AluY |
CAediting_1224459 | chr17_63592214_+ | SINE | Alu | AluY |
CAediting_1224460 | chr17_63592215_+ | SINE | Alu | AluY |
CAediting_1224461 | chr17_63592223_+ | SINE | Alu | AluY |
CAediting_1224462 | chr17_63592224_+ | SINE | Alu | AluY |
CAediting_1224463 | chr17_63592225_+ | SINE | Alu | AluY |
CAediting_1224464 | chr17_63592230_+ | SINE | Alu | AluY |
CAediting_1224465 | chr17_63592258_+ | SINE | Alu | AluY |
CAediting_1224466 | chr17_63592294_+ | SINE | Alu | AluY |
Top |
RNA A-to-I editing events in the alternative splicing sites for DCAF7 |
RNA A-to-I editing(s) in the alternative splicing sites. |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000136485.13.DCAF7. |
Correlation between RNA A-to-I editing and PSI for ENSG00000136485.13.DCAF7. |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for DCAF7 |
Differential gene expressions between RNA A-to-I edited and non-edited tumor samples. * The grey color means N/A. |
Correlation between RNA A-to-I editing and gene expression. |
- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for DCAF7 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for DCAF7 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1224459 | chr17_63592214_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3157-5p | 63592208 | 63592214 | 7mer-m8 | 63592194 | 63592215 | 159.00 | -20.57 |
CAediting_1224460 | chr17_63592215_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3146 | 63592211 | 63592217 | 7mer-m8 | 63592198 | 63592218 | 143.00 | -19.32 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-1229-3p | 63592218 | 63592224 | 7mer-m8 | 63592204 | 63592225 | 146.00 | -15.39 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511a-3p | 63592217 | 63592224 | 8mer-1a | 63592203 | 63592224 | 145.00 | -15.90 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511a-3p | 63592217 | 63592224 | 8mer-1a | 63592203 | 63592224 | 145.00 | -15.90 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511a-3p | 63592217 | 63592224 | 8mer-1a | 63592203 | 63592224 | 145.00 | -15.90 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511a-3p | 63592217 | 63592224 | 8mer-1a | 63592203 | 63592224 | 145.00 | -15.90 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511b-3p | 63592217 | 63592224 | 8mer-1a | 63592202 | 63592224 | 140.00 | -14.38 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6511b-3p | 63592217 | 63592224 | 8mer-1a | 63592202 | 63592224 | 140.00 | -14.38 |
CAediting_1224463 | chr17_63592225_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-412-3p | 63592218 | 63592224 | 7mer-m8 | 63592203 | 63592225 | 151.00 | -19.82 |
CAediting_1224463 | chr17_63592225_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6754-3p | 63592218 | 63592224 | 7mer-m8 | 63592205 | 63592225 | 144.00 | -16.46 |
CAediting_1224452 | chr17_63592139_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4466 | 63592137 | 63592142 | 6mer | 63592126 | 63592143 | 143.00 | -28.34 |
CAediting_1224454 | chr17_63592147_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-513a-5p | 63592141 | 63592147 | 7mer-m8 | 63592131 | 63592148 | 144.00 | -17.77 |
CAediting_1224454 | chr17_63592147_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-513a-5p | 63592141 | 63592147 | 7mer-m8 | 63592131 | 63592148 | 144.00 | -17.77 |
CAediting_1224454 | chr17_63592147_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-638 | 63592146 | 63592152 | 7mer-1a | 63592128 | 63592152 | 151.00 | -32.73 |
CAediting_1224461 | chr17_63592223_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-23a-5p | 63592221 | 63592227 | 7mer-m8 | 63592202 | 63592228 | 142.00 | -26.19 |
CAediting_1224461 | chr17_63592223_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-23b-5p | 63592221 | 63592227 | 7mer-m8 | 63592208 | 63592228 | 152.00 | -19.34 |
CAediting_1224464 | chr17_63592230_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-483-5p | 63592226 | 63592232 | 7mer-m8 | 63592212 | 63592233 | 140.00 | -14.01 |
CAediting_1224466 | chr17_63592294_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-646 | 63592289 | 63592295 | 7mer-m8 | 63592277 | 63592296 | 144.00 | -20.34 |
CAediting_1224458 | chr17_63592194_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-301a-5p | 63592187 | 63592193 | 7mer-m8 | 63592173 | 63592194 | 151.00 | -14.53 |
CAediting_1224458 | chr17_63592194_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-301b-5p | 63592187 | 63592193 | 7mer-m8 | 63592173 | 63592194 | 140.00 | -13.00 |
CAediting_1224458 | chr17_63592194_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6780a-3p | 63592189 | 63592195 | 7mer-m8 | 63592176 | 63592196 | 144.00 | -14.01 |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1224454 | chr17_63592147_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-10399-5p | 63592142 | 63592148 | 7mer-m8 | 63592128 | 63592149 | 148 | -10 |
CAediting_1224455 | chr17_63592148_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-10399-5p | 63592142 | 63592148 | 7mer-m8 | 63592128 | 63592149 | 148 | -10 |
CAediting_1224457 | chr17_63592191_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-11181-5p | 63592186 | 63592193 | 8mer-1a | 63592173 | 63592193 | 140 | -12.52 |
CAediting_1224462 | chr17_63592224_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-193b-5p | 63592222 | 63592229 | 8mer-1a | 63592208 | 63592229 | 142 | -13.06 |
CAediting_1224463 | chr17_63592225_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-193b-5p | 63592222 | 63592229 | 8mer-1a | 63592208 | 63592229 | 142 | -13.06 |
CAediting_1224456 | chr17_63592178_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3126-3p | 63592174 | 63592180 | 7mer-m8 | 63592161 | 63592181 | 150 | -16.43 |
CAediting_1224463 | chr17_63592225_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3170 | 63592223 | 63592229 | 7mer-m8 | 63592206 | 63592230 | 143 | -14.72 |
CAediting_1224464 | chr17_63592230_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3170 | 63592223 | 63592229 | 7mer-m8 | 63592206 | 63592230 | 143 | -14.72 |
CAediting_1224453 | chr17_63592141_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3934-5p | 63592138 | 63592144 | 7mer-m8 | 63592123 | 63592145 | 147 | -20.32 |
CAediting_1224457 | chr17_63592191_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4256 | 63592186 | 63592193 | 8mer-1a | 63592176 | 63592193 | 146 | -13.84 |
CAediting_1224460 | chr17_63592215_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4716-5p | 63592213 | 63592219 | 7mer-m8 | 63592199 | 63592220 | 140 | -11.49 |
CAediting_1224465 | chr17_63592258_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4735-5p | 63592252 | 63592258 | 7mer-m8 | 63592238 | 63592259 | 140 | -4.28 |
CAediting_1224455 | chr17_63592148_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-5089-5p | 63592146 | 63592152 | 7mer-m8 | 63592131 | 63592153 | 148 | -13.62 |
CAediting_1224453 | chr17_63592141_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-552-3p | 63592139 | 63592146 | 8mer-1a | 63592124 | 63592146 | 142 | -14.51 |
CAediting_1224466 | chr17_63592294_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-562 | 63592290 | 63592296 | 7mer-m8 | 63592277 | 63592297 | 151 | -12.18 |
CAediting_1224466 | chr17_63592294_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-5697 | 63592291 | 63592297 | 7mer-m8 | 63592279 | 63592298 | 148 | -14.12 |
CAediting_1224456 | chr17_63592178_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-588 | 63592171 | 63592177 | 7mer-m8 | 63592158 | 63592178 | 144 | -17.14 |
CAediting_1224454 | chr17_63592147_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6504-3p | 63592142 | 63592148 | 7mer-m8 | 63592128 | 63592149 | 145 | -14.48 |
CAediting_1224455 | chr17_63592148_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6504-3p | 63592142 | 63592148 | 7mer-m8 | 63592128 | 63592149 | 145 | -14.48 |
CAediting_1224452 | chr17_63592139_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6807-5p | 63592132 | 63592138 | 7mer-m8 | 63592118 | 63592139 | 141 | -14.53 |
CAediting_1224463 | chr17_63592225_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6855-5p | 63592223 | 63592229 | 7mer-m8 | 63592204 | 63592230 | 147 | -16.06 |
CAediting_1224464 | chr17_63592230_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6855-5p | 63592223 | 63592229 | 7mer-m8 | 63592204 | 63592230 | 147 | -16.06 |
CAediting_1224464 | chr17_63592230_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6890-5p | 63592224 | 63592230 | 7mer-m8 | 63592211 | 63592231 | 142 | -13.82 |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-1304-3p | 63591754 | 63591761 | 8mer-1a | 63591740 | 63591761 | 140 | -15.69 |
CAediting_393 | chr1_1167164_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-200b-3p | 63592151 | 63592157 | 7mer-m8 | 63592137 | 63592158 | 140 | -10.3 |
CAediting_688080 | chr9_63819626_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4477b | 63589427 | 63589433 | 7mer-m8 | 63589413 | 63589434 | 140 | -10.68 |
CAediting_688080 | chr9_63819626_+ | ENSG00000136485.13 | ENST00000415273 | hsa-miR-4477b | 63589427 | 63589433 | 7mer-m8 | 63589413 | 63589434 | 140 | -10.68 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-548aa | 63591567 | 63591573 | 7mer-m8 | 63591550 | 63591574 | 154 | -18.5 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-641 | 63589518 | 63589523 | 6mer | 63589500 | 63589524 | 140 | -21.23 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-641 | 63589549 | 63589555 | 7mer-m8 | 63589534 | 63589556 | 145 | -14.98 |
CAediting_1368054 | chr19_46709310_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-320e | 63591447 | 63591453 | 7mer-m8 | 63591437 | 63591454 | 146 | -17.54 |
CAediting_1368054 | chr19_46709310_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-320e | 63591580 | 63591586 | 7mer-m8 | 63591569 | 63591587 | 150 | -22.86 |
CAediting_1368054 | chr19_46709310_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-320e | 63593261 | 63593267 | 7mer-m8 | 63593251 | 63593268 | 140 | -18.98 |
CAediting_86358 | chr1_109598906_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-197-5p | 63591520 | 63591526 | 7mer-m8 | 63591506 | 63591527 | 146 | -24.82 |
CAediting_77128 | chr1_85133844_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4423-3p | 63589186 | 63589191 | 6mer | 63589172 | 63589192 | 140 | -17.32 |
CAediting_1399425 | chr20_1392958_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6869-5p | 63590462 | 63590468 | 7mer-m8 | 63590449 | 63590469 | 145 | -22.28 |
CAediting_396018 | chr5_1062918_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4635 | 63591139 | 63591144 | 6mer | 63591125 | 63591145 | 146 | -21.83 |
CAediting_604450 | chr7_133034877_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-3654 | 63589970 | 63589976 | 7mer-m8 | 63589959 | 63589977 | 145 | -20.26 |
CAediting_524911 | chr7_5495852_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-589-3p | 63593828 | 63593835 | 8mer-1a | 63593808 | 63593835 | 148 | -17.91 |
CAediting_524911 | chr7_5495852_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-589-3p | 63589860 | 63589867 | 8mer-1a | 63589843 | 63589867 | 149 | -17.17 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000415273 | hsa-miR-641 | 63589518 | 63589523 | 6mer | 63589500 | 63589524 | 140 | -21.23 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000415273 | hsa-miR-641 | 63589549 | 63589555 | 7mer-m8 | 63589534 | 63589556 | 145 | -14.98 |
CAediting_77128 | chr1_85133844_+ | ENSG00000136485.13 | ENST00000415273 | hsa-miR-4423-3p | 63589186 | 63589191 | 6mer | 63589172 | 63589192 | 140 | -17.32 |
CAediting_468389 | chr6_31355314_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6891-5p | 63591092 | 63591098 | 7mer-m8 | 63591081 | 63591099 | 151 | -21 |
CAediting_468389 | chr6_31355314_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-6891-5p | 63589369 | 63589376 | 8mer-1a | 63589358 | 63589376 | 142 | -18.11 |
CAediting_1524209 | chrX_134546392_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-503-5p | 63592951 | 63592957 | 7mer-1a | 63592935 | 63592957 | 147 | -26.68 |
CAediting_468389 | chr6_31355314_- | ENSG00000136485.13 | ENST00000415273 | hsa-miR-6891-5p | 63589369 | 63589376 | 8mer-1a | 63589358 | 63589376 | 142 | -18.11 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-197-5p | 63590461 | 63590468 | 8mer-1a | 63590446 | 63590468 | 145 | -18.99 |
CAediting_393 | chr1_1167164_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-200b-3p | 63590508 | 63590514 | 7mer-m8 | 63590494 | 63590515 | 151 | -13.77 |
CAediting_1054808 | chr15_66496985_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4512 | 63593247 | 63593253 | 7mer-m8 | 63593233 | 63593254 | 140 | -22.41 |
CAediting_396018 | chr5_1062918_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4635 | 63590066 | 63590072 | 7mer-m8 | 63590052 | 63590073 | 151 | -15.21 |
CAediting_414656 | chr5_72878640_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-4804-3p | 63593839 | 63593845 | 7mer-m8 | 63593826 | 63593846 | 149 | -7.03 |
CAediting_1524209 | chrX_134546392_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-503-5p | 63593342 | 63593348 | 7mer-1a | 63593327 | 63593348 | 142 | -21.27 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-548aa | 63590759 | 63590765 | 7mer-m8 | 63590743 | 63590766 | 154 | -12.23 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-548aa | 63590759 | 63590765 | 7mer-m8 | 63590743 | 63590766 | 154 | -12.23 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-548aa | 63593192 | 63593198 | 7mer-m8 | 63593173 | 63593199 | 146 | -7.02 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-548aa | 63593192 | 63593198 | 7mer-m8 | 63593173 | 63593199 | 146 | -7.02 |
CAediting_228905 | chr2_188297554_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-561-3p | 63593912 | 63593918 | 7mer-m8 | 63593899 | 63593919 | 153 | -7.47 |
CAediting_524911 | chr7_5495852_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-589-3p | 63590248 | 63590255 | 8mer-1a | 63590226 | 63590255 | 144 | -23.46 |
CAediting_524911 | chr7_5495852_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-589-3p | 63590976 | 63590983 | 8mer-1a | 63590960 | 63590983 | 145 | -12.54 |
CAediting_524911 | chr7_5495852_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-589-3p | 63591925 | 63591932 | 8mer-1a | 63591909 | 63591932 | 153 | -17.2 |
CAediting_748296 | chr10_51299626_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-605-3p | 63593044 | 63593050 | 7mer-m8 | 63593030 | 63593051 | 142 | -15.24 |
CAediting_748296 | chr10_51299626_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-605-3p | 63593442 | 63593448 | 7mer-m8 | 63593428 | 63593449 | 152 | -16.09 |
CAediting_748296 | chr10_51299626_+ | ENSG00000136485.13 | ENST00000614556 | hsa-miR-605-3p | 63589800 | 63589806 | 7mer-m8 | 63589786 | 63589807 | 141 | -14.11 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-641 | 63589267 | 63589273 | 7mer-m8 | 63589246 | 63589274 | 146 | -14.88 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000614556 | hsa-miR-641 | 63590143 | 63590148 | 6mer | 63590126 | 63590149 | 142 | -15.95 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136485.13 | ENST00000415273 | hsa-miR-641 | 63589267 | 63589273 | 7mer-m8 | 63589246 | 63589274 | 146 | -14.88 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for DCAF7 |
- RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in RNA structures for Minimum free energy (MFE). |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for DCAF7 |
Correlation between ADAR gene expression and RNA editing frequency |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for DCAF7 |
Correlation between Cancer stages and RNA editing frequency |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
ESCA | pathologic_stage | CAediting_1224446 | chr17_63587906_+ | 0.0356053354501907 | 0.300971072214605 |
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Relation with survival for DCAF7 |
Correlation between RNA editing and survival |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
ESCA | CAediting_1224446 | chr17_63587906_+ | 0.0220793550581215 | 0.0242729 | 26.6117 |
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RelatedDrugs for DCAF7 |
Approved drugs targeting this gene. (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DCAF7 |
Diseases associated with this gene. (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
DCAF7 | C0376634 | Craniofacial Abnormalities | 1 | CTD_human |
DCAF7 | C1860789 | Leukemia, Megakaryoblastic, of Down Syndrome | 1 | CTD_human |