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Editing gene: MSLN (CAeditome ID:10232)

Gene summary for MSLN

Gene summary

Gene information	Gene symbol	MSLN
	Gene ID	10232
	Gene name	mesothelin
	Synonyms	MPF\|SMRP
	Cytomap	16p13.3
	Type of gene	protein-coding
	Description	mesothelinCAK1 antigenmegakaryocyte potentiating factorpre-pro-megakaryocyte-potentiating factorsoluble MPF mesothelin related protein
	Modification date	20210518
	UniProtAcc	Q13421
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for MSLN

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000102854.13

RNA A-to-I editing events in Cancer.

CAediting_1077747(644125, +), CAediting_1077748(644182, +), CAediting_1077749(644978, +), CAediting_1077750(645002, +), CAediting_1077751(645076, +), CAediting_1077752(645085, +), CAediting_1077753(645088, +), CAediting_1077754(645114, +), CAediting_1077755(645170, +), CAediting_1077756(645242, +), CAediting_1077757(645368, +), CAediting_1077758(645373, +), CAediting_1077759(645408, +), CAediting_1077760(645454, +), CAediting_1077761(645537, +), CAediting_1077762(647183, +), CAediting_1077763(654577, +), CAediting_1077764(654593, +), CAediting_1077765(663143, +), CAediting_1077766(663183, +), CAediting_1077767(663188, +), CAediting_1077768(663199, +), CAediting_1077769(663209, +), CAediting_1077770(663223, +), CAediting_1077771(663228, +), CAediting_1077772(663231, +), CAediting_1077773(663237, +), CAediting_1077774(663239, +), CAediting_1077775(663242, +), CAediting_1077776(663251, +), CAediting_1077777(663252, +), CAediting_1077778(663254, +), CAediting_1077779(663260, +), CAediting_1077780(663261, +), CAediting_1077781(663267, +), CAediting_1077782(663273, +), CAediting_1077783(663278, +), CAediting_1077784(663279, +), CAediting_1077785(663280, +), CAediting_1077786(663282, +), CAediting_1077787(663287, +), CAediting_1077788(663288, +), CAediting_1077789(663291, +), CAediting_1077790(663311, +), CAediting_1077791(663317, +), CAediting_1077792(663318, +), CAediting_1077793(663323, +), CAediting_1077794(663327, +), CAediting_1077795(663334, +), CAediting_1077796(663340, +), CAediting_1077797(663344, +), CAediting_1077798(663345, +), CAediting_1077799(663350, +), CAediting_1077800(663358, +), CAediting_1077801(663359, +), CAediting_1077802(663363, +), CAediting_1077803(663370, +), CAediting_1077804(663383, +), CAediting_1077805(663384, +), CAediting_1077806(663388, +), CAediting_1077807(663420, +), CAediting_1077808(663429, +), CAediting_1077809(663436, +), CAediting_1077810(663448, +), CAediting_1077811(663450, +), CAediting_1077812(663488, +), CAediting_1077813(663630, +), CAediting_1077814(663631, +), CAediting_1077815(663879, +), CAediting_1077816(664704, +), CAediting_1077817(664741, +), CAediting_1077818(664754, +), CAediting_1077819(664759, +), CAediting_1077820(664760, +), CAediting_1077821(664779, +), CAediting_1077822(664784, +), CAediting_1077823(664797, +), CAediting_1077824(664806, +), CAediting_1077825(664809, +), CAediting_1077826(664819, +), CAediting_1077827(664845, +), CAediting_1077828(664846, +), CAediting_1077829(664855, +), CAediting_1077830(664864, +), CAediting_1077831(664878, +), CAediting_1077832(664886, +), CAediting_1077833(664890, +), CAediting_1077834(664903, +), CAediting_1077835(664918, +), CAediting_1077836(664926, +), CAediting_1077837(664939, +), CAediting_1077838(664940, +), CAediting_1077839(664941, +), CAediting_1077840(664955, +), CAediting_1077841(664962, +), CAediting_1077842(672684, +), CAediting_1077843(673252, +), CAediting_1077844(690653, +), CAediting_1077845(690686, +), CAediting_1077846(690693, +), CAediting_1077847(690700, +), CAediting_1077848(690861, +), CAediting_1077849(691566, +), CAediting_1077850(691762, +), CAediting_1077851(691775, +), CAediting_1077852(691777, +), CAediting_1077853(691793, +), CAediting_1077854(691817, +), CAediting_1077855(691872, +), CAediting_1077856(691884, +), CAediting_1077857(691891, +), CAediting_1077858(691898, +), CAediting_1077859(691924, +), CAediting_1077860(691952, +), CAediting_1077861(691970, +), CAediting_1077862(691985, +), CAediting_1077863(710552, +), CAediting_1077864(710560, +), CAediting_1077865(710564, +), CAediting_1077866(710576, +), CAediting_1077867(710580, +), CAediting_1077868(710581, +), CAediting_1077869(710585, +), CAediting_1077870(710623, +), CAediting_1077871(710629, +), CAediting_1077872(712091, +), CAediting_1077873(712095, +), CAediting_1077874(712099, +), CAediting_1077875(712138, +), CAediting_1077876(712139, +), CAediting_1077877(712142, +), CAediting_1077878(712144, +), CAediting_1077879(712154, +), CAediting_1077880(712175, +), CAediting_1077881(712178, +), CAediting_1077882(712192, +), CAediting_1077883(712208, +), CAediting_1077884(712209, +), CAediting_1077885(712236, +), CAediting_1077886(712240, +), CAediting_1077887(712241, +), CAediting_1077888(712249, +), CAediting_1077889(712255, +), CAediting_1077890(712273, +), CAediting_1077891(712284, +), CAediting_1077892(712310, +), CAediting_1077893(712327, +), CAediting_1077894(712337, +), CAediting_1077895(712344, +), CAediting_1077896(712349, +), CAediting_1077897(712422, +), CAediting_1077898(712460, +), CAediting_1077899(712477, +), CAediting_1077900(712524, +), CAediting_1077901(712591, +), CAediting_1077902(712600, +), CAediting_1077903(712628, +), CAediting_1077904(713066, +), CAediting_1077905(713067, +), CAediting_1077906(713072, +), CAediting_1077907(713102, +), CAediting_1077908(713107, +), CAediting_1077909(713120, +), CAediting_1077910(713121, +), CAediting_1077911(713132, +), CAediting_1077912(713145, +), CAediting_1077913(713146, +), CAediting_1077914(713160, +), CAediting_1077915(713163, +), CAediting_1077916(713164, +), CAediting_1077917(713166, +), CAediting_1077918(713169, +), CAediting_1077919(713174, +), CAediting_1077920(713205, +), CAediting_1077921(713232, +), CAediting_1077922(713270, +), CAediting_1077923(713378, +), CAediting_1077924(713383, +), CAediting_1077925(713421, +), CAediting_1077926(713487, +), CAediting_1077927(713488, +), CAediting_1077928(713489, +), CAediting_1077929(713494, +), CAediting_1077930(713520, +), CAediting_1077931(713526, +), CAediting_1077932(713543, +), CAediting_1077933(713547, +), CAediting_1077934(713561, +), CAediting_1077935(713562, +), CAediting_1077936(713582, +), CAediting_1077937(713586, +), CAediting_1077938(713591, +), CAediting_1077939(713623, +), CAediting_1077940(714882, +), CAediting_1077941(716232, +), CAediting_1077942(718025, +), CAediting_1077943(719528, +), CAediting_1077944(719536, +), CAediting_1077945(719544, +), CAediting_1077946(719545, +), CAediting_1077947(719550, +), CAediting_1077948(719551, +), CAediting_1077949(719572, +), CAediting_1077950(719588, +), CAediting_1077951(719642, +), CAediting_1077952(719649, +), CAediting_1077953(719653, +), CAediting_1077954(719657, +), CAediting_1077955(719675, +), CAediting_1077956(719698, +), CAediting_1077957(719728, +), CAediting_1077958(719741, +), CAediting_1077959(719745, +), CAediting_1077960(719790, +), CAediting_1077961(741980, +), CAediting_1077962(742010, +), CAediting_1077963(742020, +), CAediting_1077964(742091, +), CAediting_1077965(742132, +), CAediting_1077966(742817, +), CAediting_1077967(742836, +), CAediting_1077968(742844, +), CAediting_1077969(742845, +), CAediting_1077970(742859, +), CAediting_1077971(742870, +), CAediting_1077972(742896, +), CAediting_1077973(742939, +), CAediting_1077974(742952, +), CAediting_1077975(743086, +), CAediting_1077976(743096, +), CAediting_1077977(743122, +), CAediting_1077978(744436, +), CAediting_1077979(744758, +), CAediting_1077980(744896, +), CAediting_1077981(744898, +), CAediting_1077982(745232, +), CAediting_1077983(747307, +), CAediting_1077984(747394, +), CAediting_1077985(747415, +), CAediting_1077986(747854, +), CAediting_1077987(747855, +), CAediting_1077988(747943, +), CAediting_1077989(747973, +), CAediting_1077990(748067, +), CAediting_1077991(748876, +), CAediting_1077992(749064, +), CAediting_1077993(749066, +), CAediting_1077994(749089, +), CAediting_1077995(749723, +), CAediting_1077996(749818, +), CAediting_1077997(749840, +), CAediting_1077998(749884, +), CAediting_1077999(749890, +), CAediting_1078000(749973, +), CAediting_1078001(752504, +), CAediting_1078002(752510, +), CAediting_1078003(752524, +), CAediting_1078004(752540, +), CAediting_1078005(752546, +), CAediting_1078006(752559, +), CAediting_1078007(752564, +), CAediting_1078008(752617, +), CAediting_1078009(752634, +), CAediting_1078010(752654, +), CAediting_1078011(752655, +), CAediting_1078012(752656, +), CAediting_1078013(752669, +), CAediting_1078014(752694, +), CAediting_1078015(752708, +), CAediting_1078016(755283, +), CAediting_1078017(755600, +), CAediting_1078018(755624, +), CAediting_1078019(755656, +), CAediting_1078020(755676, +), CAediting_1078021(755702, +), CAediting_1078022(755710, +), CAediting_1078023(755712, +), CAediting_1078024(755742, +), CAediting_1078025(755761, +), CAediting_1078026(755766, +), CAediting_1078027(755774, +), CAediting_1078028(755781, +), CAediting_1078029(755785, +), CAediting_1078030(755833, +), CAediting_1078031(756755, +), CAediting_1078032(756809, +), CAediting_1078033(756821, +), CAediting_1078034(756834, +), CAediting_1078035(756838, +), CAediting_1078036(756864, +), CAediting_1078037(756874, +), CAediting_1078038(756881, +), CAediting_1078039(756882, +), CAediting_1078040(756960, +), CAediting_1078041(756991, +), CAediting_1078042(757020, +),

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RNA editing positional annotations for MSLN using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1077747	chr16_644125_+	ncRNA_intronic
CAediting_1077748	chr16_644182_+	ncRNA_intronic
CAediting_1077749	chr16_644978_+	ncRNA_intronic
CAediting_1077750	chr16_645002_+	ncRNA_intronic
CAediting_1077751	chr16_645076_+	ncRNA_intronic
CAediting_1077752	chr16_645085_+	ncRNA_intronic
CAediting_1077753	chr16_645088_+	ncRNA_intronic
CAediting_1077754	chr16_645114_+	ncRNA_intronic
CAediting_1077755	chr16_645170_+	ncRNA_exonic
CAediting_1077756	chr16_645242_+	ncRNA_exonic
CAediting_1077757	chr16_645368_+	ncRNA_exonic
CAediting_1077758	chr16_645373_+	ncRNA_exonic
CAediting_1077759	chr16_645408_+	ncRNA_exonic
CAediting_1077760	chr16_645454_+	ncRNA_exonic
CAediting_1077761	chr16_645537_+	ncRNA_exonic
CAediting_1077762	chr16_647183_+	ncRNA_exonic
CAediting_1077763	chr16_654577_+	ncRNA_exonic
CAediting_1077764	chr16_654593_+	ncRNA_exonic
CAediting_1077765	chr16_663143_+	ncRNA_exonic;splicing
CAediting_1077766	chr16_663183_+	ncRNA_exonic
CAediting_1077767	chr16_663188_+	ncRNA_exonic
CAediting_1077768	chr16_663199_+	ncRNA_exonic
CAediting_1077769	chr16_663209_+	ncRNA_exonic
CAediting_1077770	chr16_663223_+	ncRNA_exonic
CAediting_1077771	chr16_663228_+	ncRNA_exonic
CAediting_1077772	chr16_663231_+	ncRNA_exonic
CAediting_1077773	chr16_663237_+	ncRNA_exonic
CAediting_1077774	chr16_663239_+	ncRNA_exonic
CAediting_1077775	chr16_663242_+	ncRNA_exonic
CAediting_1077776	chr16_663251_+	ncRNA_exonic
CAediting_1077777	chr16_663252_+	ncRNA_exonic
CAediting_1077778	chr16_663254_+	ncRNA_exonic
CAediting_1077779	chr16_663260_+	ncRNA_exonic
CAediting_1077780	chr16_663261_+	ncRNA_exonic
CAediting_1077781	chr16_663267_+	ncRNA_exonic
CAediting_1077782	chr16_663273_+	ncRNA_exonic
CAediting_1077783	chr16_663278_+	ncRNA_exonic
CAediting_1077784	chr16_663279_+	ncRNA_exonic
CAediting_1077785	chr16_663280_+	ncRNA_exonic
CAediting_1077786	chr16_663282_+	ncRNA_exonic
CAediting_1077787	chr16_663287_+	ncRNA_exonic
CAediting_1077788	chr16_663288_+	ncRNA_exonic
CAediting_1077789	chr16_663291_+	ncRNA_exonic
CAediting_1077790	chr16_663311_+	ncRNA_exonic
CAediting_1077791	chr16_663317_+	ncRNA_exonic
CAediting_1077792	chr16_663318_+	ncRNA_exonic
CAediting_1077793	chr16_663323_+	ncRNA_exonic
CAediting_1077794	chr16_663327_+	ncRNA_exonic
CAediting_1077795	chr16_663334_+	ncRNA_exonic
CAediting_1077796	chr16_663340_+	ncRNA_exonic
CAediting_1077797	chr16_663344_+	ncRNA_exonic
CAediting_1077798	chr16_663345_+	ncRNA_exonic
CAediting_1077799	chr16_663350_+	ncRNA_exonic
CAediting_1077800	chr16_663358_+	ncRNA_exonic
CAediting_1077801	chr16_663359_+	ncRNA_exonic
CAediting_1077802	chr16_663363_+	ncRNA_exonic
CAediting_1077803	chr16_663370_+	ncRNA_exonic
CAediting_1077804	chr16_663383_+	ncRNA_exonic
CAediting_1077805	chr16_663384_+	ncRNA_exonic
CAediting_1077806	chr16_663388_+	ncRNA_exonic
CAediting_1077807	chr16_663420_+	ncRNA_exonic
CAediting_1077808	chr16_663429_+	ncRNA_exonic
CAediting_1077809	chr16_663436_+	ncRNA_exonic
CAediting_1077810	chr16_663448_+	ncRNA_exonic
CAediting_1077811	chr16_663450_+	ncRNA_exonic
CAediting_1077812	chr16_663488_+	ncRNA_exonic
CAediting_1077813	chr16_663630_+	ncRNA_intronic
CAediting_1077814	chr16_663631_+	ncRNA_intronic
CAediting_1077815	chr16_663879_+	ncRNA_intronic
CAediting_1077816	chr16_664704_+	ncRNA_intronic
CAediting_1077817	chr16_664741_+	ncRNA_intronic
CAediting_1077818	chr16_664754_+	ncRNA_intronic
CAediting_1077819	chr16_664759_+	ncRNA_intronic
CAediting_1077820	chr16_664760_+	ncRNA_intronic
CAediting_1077821	chr16_664779_+	ncRNA_intronic
CAediting_1077822	chr16_664784_+	ncRNA_intronic
CAediting_1077823	chr16_664797_+	ncRNA_intronic
CAediting_1077824	chr16_664806_+	ncRNA_intronic
CAediting_1077825	chr16_664809_+	ncRNA_intronic
CAediting_1077826	chr16_664819_+	ncRNA_intronic
CAediting_1077827	chr16_664845_+	ncRNA_intronic
CAediting_1077828	chr16_664846_+	ncRNA_intronic
CAediting_1077829	chr16_664855_+	ncRNA_intronic
CAediting_1077830	chr16_664864_+	ncRNA_intronic
CAediting_1077831	chr16_664878_+	ncRNA_intronic
CAediting_1077832	chr16_664886_+	ncRNA_intronic
CAediting_1077833	chr16_664890_+	ncRNA_intronic
CAediting_1077834	chr16_664903_+	ncRNA_intronic
CAediting_1077835	chr16_664918_+	ncRNA_intronic
CAediting_1077836	chr16_664926_+	ncRNA_intronic
CAediting_1077837	chr16_664939_+	ncRNA_intronic
CAediting_1077838	chr16_664940_+	ncRNA_intronic
CAediting_1077839	chr16_664941_+	ncRNA_intronic
CAediting_1077840	chr16_664955_+	ncRNA_intronic
CAediting_1077841	chr16_664962_+	ncRNA_intronic
CAediting_1077842	chr16_672684_+	ncRNA_exonic
CAediting_1077843	chr16_673252_+	ncRNA_exonic
CAediting_1077844	chr16_690653_+	ncRNA_exonic
CAediting_1077845	chr16_690686_+	ncRNA_exonic
CAediting_1077846	chr16_690693_+	ncRNA_exonic
CAediting_1077847	chr16_690700_+	ncRNA_exonic
CAediting_1077848	chr16_690861_+	ncRNA_exonic
CAediting_1077849	chr16_691566_+	ncRNA_exonic
CAediting_1077850	chr16_691762_+	ncRNA_exonic
CAediting_1077851	chr16_691775_+	ncRNA_exonic
CAediting_1077852	chr16_691777_+	ncRNA_exonic
CAediting_1077853	chr16_691793_+	ncRNA_exonic
CAediting_1077854	chr16_691817_+	ncRNA_exonic
CAediting_1077855	chr16_691872_+	ncRNA_exonic
CAediting_1077856	chr16_691884_+	ncRNA_exonic
CAediting_1077857	chr16_691891_+	ncRNA_exonic
CAediting_1077858	chr16_691898_+	ncRNA_exonic
CAediting_1077859	chr16_691924_+	ncRNA_exonic
CAediting_1077860	chr16_691952_+	ncRNA_exonic
CAediting_1077861	chr16_691970_+	ncRNA_exonic
CAediting_1077862	chr16_691985_+	ncRNA_exonic
CAediting_1077863	chr16_710552_+	intronic
CAediting_1077864	chr16_710560_+	intronic
CAediting_1077865	chr16_710564_+	intronic
CAediting_1077866	chr16_710576_+	intronic
CAediting_1077867	chr16_710580_+	intronic
CAediting_1077868	chr16_710581_+	intronic
CAediting_1077869	chr16_710585_+	intronic
CAediting_1077870	chr16_710623_+	intronic
CAediting_1077871	chr16_710629_+	intronic
CAediting_1077872	chr16_712091_+	intronic
CAediting_1077873	chr16_712095_+	intronic
CAediting_1077874	chr16_712099_+	intronic
CAediting_1077875	chr16_712138_+	intronic
CAediting_1077876	chr16_712139_+	intronic
CAediting_1077877	chr16_712142_+	intronic
CAediting_1077878	chr16_712144_+	intronic
CAediting_1077879	chr16_712154_+	intronic
CAediting_1077880	chr16_712175_+	intronic
CAediting_1077881	chr16_712178_+	intronic
CAediting_1077882	chr16_712192_+	intronic
CAediting_1077883	chr16_712208_+	intronic
CAediting_1077884	chr16_712209_+	intronic
CAediting_1077885	chr16_712236_+	intronic
CAediting_1077886	chr16_712240_+	intronic
CAediting_1077887	chr16_712241_+	intronic
CAediting_1077888	chr16_712249_+	intronic
CAediting_1077889	chr16_712255_+	intronic
CAediting_1077890	chr16_712273_+	intronic
CAediting_1077891	chr16_712284_+	intronic
CAediting_1077892	chr16_712310_+	intronic
CAediting_1077893	chr16_712327_+	intronic
CAediting_1077894	chr16_712337_+	intronic
CAediting_1077895	chr16_712344_+	intronic
CAediting_1077896	chr16_712349_+	intronic
CAediting_1077897	chr16_712422_+	intronic
CAediting_1077898	chr16_712460_+	intronic
CAediting_1077899	chr16_712477_+	intronic
CAediting_1077900	chr16_712524_+	intronic
CAediting_1077901	chr16_712591_+	intronic
CAediting_1077902	chr16_712600_+	intronic
CAediting_1077903	chr16_712628_+	intronic
CAediting_1077904	chr16_713066_+	intronic
CAediting_1077905	chr16_713067_+	intronic
CAediting_1077906	chr16_713072_+	intronic
CAediting_1077907	chr16_713102_+	intronic
CAediting_1077908	chr16_713107_+	intronic
CAediting_1077909	chr16_713120_+	intronic
CAediting_1077910	chr16_713121_+	intronic
CAediting_1077911	chr16_713132_+	intronic
CAediting_1077912	chr16_713145_+	intronic
CAediting_1077913	chr16_713146_+	intronic
CAediting_1077914	chr16_713160_+	intronic
CAediting_1077915	chr16_713163_+	intronic
CAediting_1077916	chr16_713164_+	intronic
CAediting_1077917	chr16_713166_+	intronic
CAediting_1077918	chr16_713169_+	intronic
CAediting_1077919	chr16_713174_+	intronic
CAediting_1077920	chr16_713205_+	intronic
CAediting_1077921	chr16_713232_+	intronic
CAediting_1077922	chr16_713270_+	intronic
CAediting_1077923	chr16_713378_+	intronic
CAediting_1077924	chr16_713383_+	intronic
CAediting_1077925	chr16_713421_+	intronic
CAediting_1077926	chr16_713487_+	intronic
CAediting_1077927	chr16_713488_+	intronic
CAediting_1077928	chr16_713489_+	intronic
CAediting_1077929	chr16_713494_+	intronic
CAediting_1077930	chr16_713520_+	intronic
CAediting_1077931	chr16_713526_+	intronic
CAediting_1077932	chr16_713543_+	intronic
CAediting_1077933	chr16_713547_+	intronic
CAediting_1077934	chr16_713561_+	intronic
CAediting_1077935	chr16_713562_+	intronic
CAediting_1077936	chr16_713582_+	intronic
CAediting_1077937	chr16_713586_+	intronic
CAediting_1077938	chr16_713591_+	intronic
CAediting_1077939	chr16_713623_+	intronic
CAediting_1077940	chr16_714882_+	intronic
CAediting_1077941	chr16_716232_+	intronic
CAediting_1077942	chr16_718025_+	UTR3
CAediting_1077943	chr16_719528_+	UTR3
CAediting_1077944	chr16_719536_+	UTR3
CAediting_1077945	chr16_719544_+	UTR3
CAediting_1077946	chr16_719545_+	UTR3
CAediting_1077947	chr16_719550_+	UTR3
CAediting_1077948	chr16_719551_+	UTR3
CAediting_1077949	chr16_719572_+	UTR3
CAediting_1077950	chr16_719588_+	UTR3
CAediting_1077951	chr16_719642_+	UTR3
CAediting_1077952	chr16_719649_+	UTR3
CAediting_1077953	chr16_719653_+	UTR3
CAediting_1077954	chr16_719657_+	intronic
CAediting_1077955	chr16_719675_+	intronic
CAediting_1077956	chr16_719698_+	intronic
CAediting_1077957	chr16_719728_+	intronic
CAediting_1077958	chr16_719741_+	intronic
CAediting_1077959	chr16_719745_+	intronic
CAediting_1077960	chr16_719790_+	intronic
CAediting_1077961	chr16_741980_+	intronic
CAediting_1077962	chr16_742010_+	intronic
CAediting_1077963	chr16_742020_+	intronic
CAediting_1077964	chr16_742091_+	intronic
CAediting_1077965	chr16_742132_+	intronic
CAediting_1077966	chr16_742817_+	intronic
CAediting_1077967	chr16_742836_+	intronic
CAediting_1077968	chr16_742844_+	intronic
CAediting_1077969	chr16_742845_+	intronic
CAediting_1077970	chr16_742859_+	intronic
CAediting_1077971	chr16_742870_+	intronic
CAediting_1077972	chr16_742896_+	intronic
CAediting_1077973	chr16_742939_+	intronic
CAediting_1077974	chr16_742952_+	intronic
CAediting_1077975	chr16_743086_+	intronic
CAediting_1077976	chr16_743096_+	intronic
CAediting_1077977	chr16_743122_+	intronic
CAediting_1077978	chr16_744436_+	intronic
CAediting_1077979	chr16_744758_+	intronic
CAediting_1077980	chr16_744896_+	intronic
CAediting_1077981	chr16_744898_+	intronic
CAediting_1077982	chr16_745232_+	intronic
CAediting_1077983	chr16_747307_+	intronic
CAediting_1077984	chr16_747394_+	intronic
CAediting_1077985	chr16_747415_+	intronic
CAediting_1077986	chr16_747854_+	intronic
CAediting_1077987	chr16_747855_+	intronic
CAediting_1077988	chr16_747943_+	intronic
CAediting_1077989	chr16_747973_+	intronic
CAediting_1077990	chr16_748067_+	intronic
CAediting_1077991	chr16_748876_+	intronic
CAediting_1077992	chr16_749064_+	intronic
CAediting_1077993	chr16_749066_+	intronic
CAediting_1077994	chr16_749089_+	intronic
CAediting_1077995	chr16_749723_+	intronic
CAediting_1077996	chr16_749818_+	intronic
CAediting_1077997	chr16_749840_+	intronic
CAediting_1077998	chr16_749884_+	intronic
CAediting_1077999	chr16_749890_+	intronic
CAediting_1078000	chr16_749973_+	intronic
CAediting_1078001	chr16_752504_+	intronic
CAediting_1078002	chr16_752510_+	intronic
CAediting_1078003	chr16_752524_+	intronic
CAediting_1078004	chr16_752540_+	intronic
CAediting_1078005	chr16_752546_+	intronic
CAediting_1078006	chr16_752559_+	intronic
CAediting_1078007	chr16_752564_+	intronic
CAediting_1078008	chr16_752617_+	intronic
CAediting_1078009	chr16_752634_+	intronic
CAediting_1078010	chr16_752654_+	intronic
CAediting_1078011	chr16_752655_+	intronic
CAediting_1078012	chr16_752656_+	intronic
CAediting_1078013	chr16_752669_+	intronic
CAediting_1078014	chr16_752694_+	intronic
CAediting_1078015	chr16_752708_+	intronic
CAediting_1078016	chr16_755283_+	intronic
CAediting_1078017	chr16_755600_+	intronic
CAediting_1078018	chr16_755624_+	intronic
CAediting_1078019	chr16_755656_+	intronic
CAediting_1078020	chr16_755676_+	intronic
CAediting_1078021	chr16_755702_+	intronic
CAediting_1078022	chr16_755710_+	intronic
CAediting_1078023	chr16_755712_+	intronic
CAediting_1078024	chr16_755742_+	intronic
CAediting_1078025	chr16_755761_+	intronic
CAediting_1078026	chr16_755766_+	intronic
CAediting_1078027	chr16_755774_+	intronic
CAediting_1078028	chr16_755781_+	intronic
CAediting_1078029	chr16_755785_+	intronic
CAediting_1078030	chr16_755833_+	intronic
CAediting_1078031	chr16_756755_+	intronic
CAediting_1078032	chr16_756809_+	intronic
CAediting_1078033	chr16_756821_+	intronic
CAediting_1078034	chr16_756834_+	intronic
CAediting_1078035	chr16_756838_+	intronic
CAediting_1078036	chr16_756864_+	intronic
CAediting_1078037	chr16_756874_+	intronic
CAediting_1078038	chr16_756881_+	intronic
CAediting_1078039	chr16_756882_+	intronic
CAediting_1078040	chr16_756960_+	intronic
CAediting_1078041	chr16_756991_+	intronic
CAediting_1078042	chr16_757020_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1077747	chr16_644125_+	SINE	Alu	AluSp
CAediting_1077748	chr16_644182_+	SINE	Alu	AluSp
CAediting_1077749	chr16_644978_+	SINE	Alu	AluY
CAediting_1077750	chr16_645002_+	SINE	Alu	AluY
CAediting_1077751	chr16_645076_+	SINE	Alu	AluY
CAediting_1077752	chr16_645085_+	SINE	Alu	AluY
CAediting_1077753	chr16_645088_+	SINE	Alu	AluY
CAediting_1077754	chr16_645114_+	SINE	Alu	AluY
CAediting_1077755	chr16_645170_+	SINE	Alu	AluY
CAediting_1077756	chr16_645242_+	SINE	Alu	AluY
CAediting_1077757	chr16_645368_+	SINE	Alu	AluSx1
CAediting_1077758	chr16_645373_+	SINE	Alu	AluSx1
CAediting_1077759	chr16_645408_+	SINE	Alu	AluSx1
CAediting_1077760	chr16_645454_+	SINE	Alu	AluSx1
CAediting_1077761	chr16_645537_+	SINE	Alu	AluSx1
CAediting_1077763	chr16_654577_+	SINE	Alu	AluY
CAediting_1077764	chr16_654593_+	SINE	Alu	AluY
CAediting_1077766	chr16_663183_+	SINE	Alu	AluSx
CAediting_1077767	chr16_663188_+	SINE	Alu	AluSx
CAediting_1077768	chr16_663199_+	SINE	Alu	AluSx
CAediting_1077769	chr16_663209_+	SINE	Alu	AluSx
CAediting_1077770	chr16_663223_+	SINE	Alu	AluSx
CAediting_1077771	chr16_663228_+	SINE	Alu	AluSx
CAediting_1077772	chr16_663231_+	SINE	Alu	AluSx
CAediting_1077773	chr16_663237_+	SINE	Alu	AluSx
CAediting_1077774	chr16_663239_+	SINE	Alu	AluSx
CAediting_1077775	chr16_663242_+	SINE	Alu	AluSx
CAediting_1077776	chr16_663251_+	SINE	Alu	AluSx
CAediting_1077777	chr16_663252_+	SINE	Alu	AluSx
CAediting_1077778	chr16_663254_+	SINE	Alu	AluSx
CAediting_1077779	chr16_663260_+	SINE	Alu	AluSx
CAediting_1077780	chr16_663261_+	SINE	Alu	AluSx
CAediting_1077781	chr16_663267_+	SINE	Alu	AluSx
CAediting_1077782	chr16_663273_+	SINE	Alu	AluSx
CAediting_1077783	chr16_663278_+	SINE	Alu	AluSx
CAediting_1077784	chr16_663279_+	SINE	Alu	AluSx
CAediting_1077785	chr16_663280_+	SINE	Alu	AluSx
CAediting_1077786	chr16_663282_+	SINE	Alu	AluSx
CAediting_1077787	chr16_663287_+	SINE	Alu	AluSx
CAediting_1077788	chr16_663288_+	SINE	Alu	AluSx
CAediting_1077789	chr16_663291_+	SINE	Alu	AluSx
CAediting_1077790	chr16_663311_+	SINE	Alu	AluSx
CAediting_1077791	chr16_663317_+	SINE	Alu	AluSx
CAediting_1077792	chr16_663318_+	SINE	Alu	AluSx
CAediting_1077793	chr16_663323_+	SINE	Alu	AluSx
CAediting_1077794	chr16_663327_+	SINE	Alu	AluSx
CAediting_1077795	chr16_663334_+	SINE	Alu	AluSx
CAediting_1077796	chr16_663340_+	SINE	Alu	AluSx
CAediting_1077797	chr16_663344_+	SINE	Alu	AluSx
CAediting_1077798	chr16_663345_+	SINE	Alu	AluSx
CAediting_1077799	chr16_663350_+	SINE	Alu	AluSx
CAediting_1077800	chr16_663358_+	SINE	Alu	AluSx
CAediting_1077801	chr16_663359_+	SINE	Alu	AluSx
CAediting_1077802	chr16_663363_+	SINE	Alu	AluSx
CAediting_1077803	chr16_663370_+	SINE	Alu	AluSx
CAediting_1077804	chr16_663383_+	SINE	Alu	AluSx
CAediting_1077805	chr16_663384_+	SINE	Alu	AluSx
CAediting_1077806	chr16_663388_+	SINE	Alu	AluSx
CAediting_1077807	chr16_663420_+	SINE	Alu	AluSx
CAediting_1077808	chr16_663429_+	SINE	Alu	AluSx
CAediting_1077809	chr16_663436_+	SINE	Alu	AluSx
CAediting_1077810	chr16_663448_+	SINE	Alu	AluSx
CAediting_1077811	chr16_663450_+	SINE	Alu	AluSx
CAediting_1077816	chr16_664704_+	SINE	Alu	AluY
CAediting_1077817	chr16_664741_+	SINE	Alu	AluY
CAediting_1077818	chr16_664754_+	SINE	Alu	AluY
CAediting_1077819	chr16_664759_+	SINE	Alu	AluY
CAediting_1077820	chr16_664760_+	SINE	Alu	AluY
CAediting_1077821	chr16_664779_+	SINE	Alu	AluY
CAediting_1077822	chr16_664784_+	SINE	Alu	AluY
CAediting_1077823	chr16_664797_+	SINE	Alu	AluY
CAediting_1077824	chr16_664806_+	SINE	Alu	AluY
CAediting_1077825	chr16_664809_+	SINE	Alu	AluY
CAediting_1077826	chr16_664819_+	SINE	Alu	AluY
CAediting_1077827	chr16_664845_+	SINE	Alu	AluY
CAediting_1077828	chr16_664846_+	SINE	Alu	AluY
CAediting_1077829	chr16_664855_+	SINE	Alu	AluY
CAediting_1077830	chr16_664864_+	SINE	Alu	AluY
CAediting_1077831	chr16_664878_+	SINE	Alu	AluY
CAediting_1077832	chr16_664886_+	SINE	Alu	AluY
CAediting_1077833	chr16_664890_+	SINE	Alu	AluY
CAediting_1077834	chr16_664903_+	SINE	Alu	AluY
CAediting_1077835	chr16_664918_+	SINE	Alu	AluY
CAediting_1077836	chr16_664926_+	SINE	Alu	AluY
CAediting_1077837	chr16_664939_+	SINE	Alu	AluY
CAediting_1077838	chr16_664940_+	SINE	Alu	AluY
CAediting_1077839	chr16_664941_+	SINE	Alu	AluY
CAediting_1077840	chr16_664955_+	SINE	Alu	AluY
CAediting_1077841	chr16_664962_+	SINE	Alu	AluY
CAediting_1077844	chr16_690653_+	SINE	Alu	AluSx1
CAediting_1077845	chr16_690686_+	SINE	Alu	AluSx1
CAediting_1077846	chr16_690693_+	SINE	Alu	AluSx1
CAediting_1077847	chr16_690700_+	SINE	Alu	AluSx1
CAediting_1077848	chr16_690861_+	SINE	Alu	AluSx1
CAediting_1077849	chr16_691566_+	SINE	Alu	AluSp
CAediting_1077850	chr16_691762_+	SINE	Alu	AluSp
CAediting_1077851	chr16_691775_+	SINE	Alu	AluSp
CAediting_1077852	chr16_691777_+	SINE	Alu	AluSp
CAediting_1077853	chr16_691793_+	SINE	Alu	AluSp
CAediting_1077854	chr16_691817_+	SINE	Alu	AluSx1
CAediting_1077855	chr16_691872_+	SINE	Alu	AluSx1
CAediting_1077856	chr16_691884_+	SINE	Alu	AluSx1
CAediting_1077857	chr16_691891_+	SINE	Alu	AluSx1
CAediting_1077858	chr16_691898_+	SINE	Alu	AluSx1
CAediting_1077859	chr16_691924_+	SINE	Alu	AluSx1
CAediting_1077860	chr16_691952_+	SINE	Alu	AluSx1
CAediting_1077861	chr16_691970_+	SINE	Alu	AluSx1
CAediting_1077862	chr16_691985_+	SINE	Alu	AluSx1
CAediting_1077872	chr16_712091_+	SINE	Alu	AluJb
CAediting_1077873	chr16_712095_+	SINE	Alu	AluJb
CAediting_1077874	chr16_712099_+	SINE	Alu	AluJb
CAediting_1077875	chr16_712138_+	SINE	Alu	AluJb
CAediting_1077876	chr16_712139_+	SINE	Alu	AluJb
CAediting_1077877	chr16_712142_+	SINE	Alu	AluJb
CAediting_1077878	chr16_712144_+	SINE	Alu	AluJb
CAediting_1077879	chr16_712154_+	SINE	Alu	AluJb
CAediting_1077880	chr16_712175_+	SINE	Alu	AluJb
CAediting_1077881	chr16_712178_+	SINE	Alu	AluJb
CAediting_1077882	chr16_712192_+	SINE	Alu	AluJb
CAediting_1077883	chr16_712208_+	SINE	Alu	AluJb
CAediting_1077884	chr16_712209_+	SINE	Alu	AluJb
CAediting_1077885	chr16_712236_+	SINE	Alu	AluJb
CAediting_1077886	chr16_712240_+	SINE	Alu	AluJb
CAediting_1077887	chr16_712241_+	SINE	Alu	AluJb
CAediting_1077888	chr16_712249_+	SINE	Alu	AluJb
CAediting_1077889	chr16_712255_+	SINE	Alu	AluJb
CAediting_1077890	chr16_712273_+	SINE	Alu	AluJb
CAediting_1077891	chr16_712284_+	SINE	Alu	AluJb
CAediting_1077892	chr16_712310_+	SINE	Alu	AluJb
CAediting_1077893	chr16_712327_+	SINE	Alu	AluJb
CAediting_1077894	chr16_712337_+	SINE	Alu	AluJb
CAediting_1077895	chr16_712344_+	SINE	Alu	AluJb
CAediting_1077896	chr16_712349_+	SINE	Alu	AluJb
CAediting_1077897	chr16_712422_+	SINE	Alu	AluSg
CAediting_1077898	chr16_712460_+	SINE	Alu	AluSg
CAediting_1077899	chr16_712477_+	SINE	Alu	AluSg
CAediting_1077900	chr16_712524_+	SINE	Alu	AluSg
CAediting_1077901	chr16_712591_+	SINE	Alu	AluSg
CAediting_1077902	chr16_712600_+	SINE	Alu	AluSg
CAediting_1077903	chr16_712628_+	SINE	Alu	AluSg
CAediting_1077904	chr16_713066_+	SINE	Alu	AluSp
CAediting_1077905	chr16_713067_+	SINE	Alu	AluSp
CAediting_1077906	chr16_713072_+	SINE	Alu	AluSp
CAediting_1077907	chr16_713102_+	SINE	Alu	AluSp
CAediting_1077908	chr16_713107_+	SINE	Alu	AluSp
CAediting_1077909	chr16_713120_+	SINE	Alu	AluSp
CAediting_1077910	chr16_713121_+	SINE	Alu	AluSp
CAediting_1077911	chr16_713132_+	SINE	Alu	AluSp
CAediting_1077912	chr16_713145_+	SINE	Alu	AluSp
CAediting_1077913	chr16_713146_+	SINE	Alu	AluSp
CAediting_1077914	chr16_713160_+	SINE	Alu	AluSp
CAediting_1077915	chr16_713163_+	SINE	Alu	AluSp
CAediting_1077916	chr16_713164_+	SINE	Alu	AluSp
CAediting_1077917	chr16_713166_+	SINE	Alu	AluSp
CAediting_1077918	chr16_713169_+	SINE	Alu	AluSp
CAediting_1077919	chr16_713174_+	SINE	Alu	AluSp
CAediting_1077920	chr16_713205_+	SINE	Alu	AluSp
CAediting_1077921	chr16_713232_+	SINE	Alu	AluSp
CAediting_1077922	chr16_713270_+	SINE	Alu	AluSp
CAediting_1077923	chr16_713378_+	SINE	Alu	AluY
CAediting_1077924	chr16_713383_+	SINE	Alu	AluY
CAediting_1077925	chr16_713421_+	SINE	Alu	AluY
CAediting_1077926	chr16_713487_+	SINE	Alu	AluY
CAediting_1077927	chr16_713488_+	SINE	Alu	AluY
CAediting_1077928	chr16_713489_+	SINE	Alu	AluY
CAediting_1077929	chr16_713494_+	SINE	Alu	AluY
CAediting_1077930	chr16_713520_+	SINE	Alu	AluY
CAediting_1077931	chr16_713526_+	SINE	Alu	AluY
CAediting_1077932	chr16_713543_+	SINE	Alu	AluY
CAediting_1077933	chr16_713547_+	SINE	Alu	AluY
CAediting_1077934	chr16_713561_+	SINE	Alu	AluY
CAediting_1077935	chr16_713562_+	SINE	Alu	AluY
CAediting_1077936	chr16_713582_+	SINE	Alu	AluY
CAediting_1077937	chr16_713586_+	SINE	Alu	AluY
CAediting_1077938	chr16_713591_+	SINE	Alu	AluY
CAediting_1077939	chr16_713623_+	SINE	Alu	AluY
CAediting_1077943	chr16_719528_+	SINE	Alu	AluSc8
CAediting_1077944	chr16_719536_+	SINE	Alu	AluSc8
CAediting_1077945	chr16_719544_+	SINE	Alu	AluSc8
CAediting_1077946	chr16_719545_+	SINE	Alu	AluSc8
CAediting_1077947	chr16_719550_+	SINE	Alu	AluSc8
CAediting_1077948	chr16_719551_+	SINE	Alu	AluSc8
CAediting_1077949	chr16_719572_+	SINE	Alu	AluSc8
CAediting_1077950	chr16_719588_+	SINE	Alu	AluSc8
CAediting_1077951	chr16_719642_+	SINE	Alu	AluSc8
CAediting_1077952	chr16_719649_+	SINE	Alu	AluSc8
CAediting_1077953	chr16_719653_+	SINE	Alu	AluSc8
CAediting_1077954	chr16_719657_+	SINE	Alu	AluSc8
CAediting_1077955	chr16_719675_+	SINE	Alu	AluSc8
CAediting_1077956	chr16_719698_+	SINE	Alu	AluSc8
CAediting_1077957	chr16_719728_+	SINE	Alu	AluSc8
CAediting_1077958	chr16_719741_+	SINE	Alu	AluSc8
CAediting_1077959	chr16_719745_+	SINE	Alu	AluSc8
CAediting_1077960	chr16_719790_+	SINE	Alu	AluSc8
CAediting_1077961	chr16_741980_+	SINE	Alu	AluSg4
CAediting_1077962	chr16_742010_+	SINE	Alu	AluSg4
CAediting_1077963	chr16_742020_+	SINE	Alu	AluSg4
CAediting_1077964	chr16_742091_+	SINE	Alu	AluSg4
CAediting_1077965	chr16_742132_+	SINE	Alu	AluSg4
CAediting_1077966	chr16_742817_+	SINE	Alu	AluSz
CAediting_1077967	chr16_742836_+	SINE	Alu	AluSz
CAediting_1077968	chr16_742844_+	SINE	Alu	AluSz
CAediting_1077969	chr16_742845_+	SINE	Alu	AluSz
CAediting_1077970	chr16_742859_+	SINE	Alu	AluSz
CAediting_1077971	chr16_742870_+	SINE	Alu	AluSz
CAediting_1077972	chr16_742896_+	SINE	Alu	AluSz
CAediting_1077973	chr16_742939_+	SINE	Alu	AluSz
CAediting_1077974	chr16_742952_+	SINE	Alu	AluSz
CAediting_1077975	chr16_743086_+	SINE	Alu	AluSx
CAediting_1077976	chr16_743096_+	SINE	Alu	AluSx
CAediting_1077977	chr16_743122_+	SINE	Alu	AluSx
CAediting_1077978	chr16_744436_+	SINE	Alu	AluJb
CAediting_1077979	chr16_744758_+	SINE	Alu	AluY
CAediting_1077980	chr16_744896_+	SINE	Alu	AluSc8
CAediting_1077981	chr16_744898_+	SINE	Alu	AluSc8
CAediting_1077982	chr16_745232_+	SINE	Alu	AluSq
CAediting_1077983	chr16_747307_+	SINE	Alu	AluSq
CAediting_1077984	chr16_747394_+	SINE	Alu	AluSq
CAediting_1077985	chr16_747415_+	SINE	Alu	AluSq
CAediting_1077986	chr16_747854_+	SINE	Alu	AluJb
CAediting_1077987	chr16_747855_+	SINE	Alu	AluJb
CAediting_1077988	chr16_747943_+	SINE	Alu	AluJb
CAediting_1077989	chr16_747973_+	SINE	Alu	AluJb
CAediting_1077990	chr16_748067_+	SINE	Alu	AluJb
CAediting_1077991	chr16_748876_+	SINE	Alu	AluSx
CAediting_1077992	chr16_749064_+	SINE	Alu	FLAM_C
CAediting_1077993	chr16_749066_+	SINE	Alu	FLAM_C
CAediting_1077994	chr16_749089_+	SINE	Alu	FLAM_C
CAediting_1077995	chr16_749723_+	SINE	Alu	AluSq2
CAediting_1077996	chr16_749818_+	SINE	Alu	AluSq2
CAediting_1077997	chr16_749840_+	SINE	Alu	AluSq2
CAediting_1077998	chr16_749884_+	SINE	Alu	AluSq2
CAediting_1077999	chr16_749890_+	SINE	Alu	AluSq2
CAediting_1078000	chr16_749973_+	SINE	Alu	AluSq2
CAediting_1078001	chr16_752504_+	SINE	Alu	AluSz
CAediting_1078002	chr16_752510_+	SINE	Alu	AluSz
CAediting_1078003	chr16_752524_+	SINE	Alu	AluSz
CAediting_1078004	chr16_752540_+	SINE	Alu	AluSz
CAediting_1078005	chr16_752546_+	SINE	Alu	AluSz
CAediting_1078006	chr16_752559_+	SINE	Alu	AluSz
CAediting_1078007	chr16_752564_+	SINE	Alu	AluSz
CAediting_1078008	chr16_752617_+	SINE	Alu	AluSz
CAediting_1078009	chr16_752634_+	SINE	Alu	AluSz
CAediting_1078010	chr16_752654_+	SINE	Alu	AluSz
CAediting_1078011	chr16_752655_+	SINE	Alu	AluSz
CAediting_1078012	chr16_752656_+	SINE	Alu	AluSz
CAediting_1078013	chr16_752669_+	SINE	Alu	AluSz
CAediting_1078014	chr16_752694_+	SINE	Alu	AluSz
CAediting_1078015	chr16_752708_+	SINE	Alu	AluSz
CAediting_1078016	chr16_755283_+	SINE	Alu	AluSz
CAediting_1078017	chr16_755600_+	SINE	Alu	AluJo
CAediting_1078018	chr16_755624_+	SINE	Alu	AluJo
CAediting_1078019	chr16_755656_+	SINE	Alu	AluJo
CAediting_1078020	chr16_755676_+	SINE	Alu	AluJo
CAediting_1078021	chr16_755702_+	SINE	Alu	AluJo
CAediting_1078022	chr16_755710_+	SINE	Alu	AluJo
CAediting_1078023	chr16_755712_+	SINE	Alu	AluJo
CAediting_1078024	chr16_755742_+	SINE	Alu	AluJo
CAediting_1078025	chr16_755761_+	SINE	Alu	AluJo
CAediting_1078026	chr16_755766_+	SINE	Alu	AluJo
CAediting_1078027	chr16_755774_+	SINE	Alu	AluJo
CAediting_1078028	chr16_755781_+	SINE	Alu	AluJo
CAediting_1078029	chr16_755785_+	SINE	Alu	AluJo
CAediting_1078030	chr16_755833_+	SINE	Alu	AluJo
CAediting_1078031	chr16_756755_+	SINE	Alu	AluJr
CAediting_1078032	chr16_756809_+	SINE	Alu	AluJr
CAediting_1078033	chr16_756821_+	SINE	Alu	AluJr
CAediting_1078034	chr16_756834_+	SINE	Alu	AluJr
CAediting_1078035	chr16_756838_+	SINE	Alu	AluJr
CAediting_1078036	chr16_756864_+	SINE	Alu	AluJr
CAediting_1078037	chr16_756874_+	SINE	Alu	AluJr
CAediting_1078038	chr16_756881_+	SINE	Alu	AluJr
CAediting_1078039	chr16_756882_+	SINE	Alu	AluJr
CAediting_1078040	chr16_756960_+	SINE	Alu	AluJr
CAediting_1078041	chr16_756991_+	SINE	Alu	AluJr
CAediting_1078042	chr16_757020_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for MSLN

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000102854.13.MSLN.

Correlation between RNA A-to-I editing and PSI for ENSG00000102854.13.MSLN.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MSLN

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MSLN

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MSLN

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_86358	chr1_109598906_+	ENSG00000102854.13	ENST00000563941	hsa-miR-197-5p	768809	768815	7mer-m8	768794	768816	155	-22.58
CAediting_86358	chr1_109598906_+	ENSG00000102854.13	ENST00000566549	hsa-miR-197-5p	768809	768815	7mer-m8	768794	768816	155	-22.58
CAediting_86358	chr1_109598906_+	ENSG00000102854.13	ENST00000382862	hsa-miR-197-5p	768809	768815	7mer-m8	768794	768816	155	-22.58

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MSLN

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for MSLN

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_1077782	chr16_663273_+	0.0105245658620799	0.253523194022884	.	.	.	.
LUSC	CAediting_1077782	chr16_663273_+	0.000647186039384864	0.330629235842803	.	.	.	.
SKCM	CAediting_1077782	chr16_663273_+	0.00678855187315574	0.340390181618077	.	.	.	.
LGG	CAediting_1077792	chr16_663318_+	.	.	0.0344597007306128	0.168366607940258	.	.
LUSC	CAediting_1077792	chr16_663318_+	0.00268743991625224	0.218294351161655	0.0012088669439088	0.234949945684639	.	.
PRAD	CAediting_1077792	chr16_663318_+	.	.	.	.	0.0287709288025594	0.196435578037297
SKCM	CAediting_1077792	chr16_663318_+	.	.	.	.	0.0013607039212684	0.255868188849777
SARC	CAediting_1077792	chr16_663318_+	0.0369922066342465	0.25732603515538	.	.	.	.
BLCA	CAediting_1077798	chr16_663345_+	.	.	.	.	0.0370619155328008	0.242878458391405
LUSC	CAediting_1077798	chr16_663345_+	0.00933486627687958	0.30648592056124	0.00810024634463623	0.311898844550202	.	.
BLCA	CAediting_1077831	chr16_664878_+	0.00373987434748793	0.320595404263549	.	.	.	.
STAD	CAediting_1077831	chr16_664878_+	.	.	.	.	0.0469289444855447	0.233360018844818
KIRP	CAediting_1077831	chr16_664878_+	.	.	0.0094718772740952	0.273618619169601	.	.
BLCA	CAediting_1077832	chr16_664886_+	0.0440150219474958	0.214023115975907	.	.	.	.
KIRP	CAediting_1077833	chr16_664890_+	.	.	2.35685595342002e-05	0.532894991458044	.	.
BLCA	CAediting_1077838	chr16_664940_+	.	.	.	.	0.0387004834074255	0.18226710560048
LUSC	CAediting_1077838	chr16_664940_+	.	.	0.0407295524860946	0.178370758474493	.	.
STAD	CAediting_1077838	chr16_664940_+	.	.	.	.	0.00220914867769156	0.307186065353258
OV	CAediting_1077838	chr16_664940_+	0.0460036734636362	0.150619981583908	.	.	.	.
LGG	CAediting_1077863	chr16_710552_+	.	.	0.000338043517127143	0.36008703417865	.	.
LGG	CAediting_1077866	chr16_710576_+	.	.	0.0272226655771933	0.27827284392695	.	.

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Relation with cancer stages for MSLN

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_1077781	chr16_663267_+	0.00932852142091307	-0.268251861253196
BRCA	pathologic_stage	CAediting_1077831	chr16_664878_+	0.0359371603986044	-0.134922665461143
KIRP	clinical_stage	CAediting_1077792	chr16_663318_+	0.00997194930434889	0.26884588701956
LUSC	pathologic_stage	CAediting_1077792	chr16_663318_+	0.00786088031384563	0.193824146425122
SKCM	pathologic_stage	CAediting_1077782	chr16_663273_+	0.00287652436710638	0.398022150214686

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Relation with survival for MSLN

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_1077866	chr16_710576_+	0.0170311478350414	0.0345844	0.000145819
COAD	CAediting_1077792	chr16_663318_+	0.0419736352303822	0.0112782	0.0165359

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RelatedDrugs for MSLN

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MSLN

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
MSLN	C0025500	Mesothelioma	3	CTD_human
MSLN	C0887833	Carcinoma, Pancreatic Ductal	3	CTD_human
MSLN	C0345967	Malignant mesothelioma	2	CTD_human
MSLN	C3714739	Mesothelial Neoplasms	2	CTD_human
MSLN	C0001418	Adenocarcinoma	1	CTD_human
MSLN	C0006826	Malignant Neoplasms	1	CTD_human
MSLN	C0024232	Lymphatic Metastasis	1	CTD_human
MSLN	C0024623	Malignant neoplasm of stomach	1	CTD_human
MSLN	C0027651	Neoplasms	1	CTD_human
MSLN	C0030297	Pancreatic Neoplasm	1	CTD_human
MSLN	C0032226	Pleural Diseases	1	CTD_human
MSLN	C0038356	Stomach Neoplasms	1	CTD_human
MSLN	C0086692	Benign Neoplasm	1	CTD_human
MSLN	C0205641	Adenocarcinoma, Basal Cell	1	CTD_human
MSLN	C0205642	Adenocarcinoma, Oxyphilic	1	CTD_human
MSLN	C0205643	Carcinoma, Cribriform	1	CTD_human
MSLN	C0205644	Carcinoma, Granular Cell	1	CTD_human
MSLN	C0205645	Adenocarcinoma, Tubular	1	CTD_human
MSLN	C0206687	Carcinoma, Endometrioid	1	CTD_human
MSLN	C0206698	Cholangiocarcinoma	1	CTD_human
MSLN	C0345905	Intrahepatic Cholangiocarcinoma	1	CTD_human
MSLN	C0346647	Malignant neoplasm of pancreas	1	CTD_human
MSLN	C0919267	ovarian neoplasm	1	CTD_human
MSLN	C1140680	Malignant neoplasm of ovary	1	CTD_human
MSLN	C1569637	Adenocarcinoma, Endometrioid	1	CTD_human
MSLN	C1708349	Hereditary Diffuse Gastric Cancer	1	CTD_human
MSLN	C3805278	Extrahepatic Cholangiocarcinoma	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene