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Editing gene: CTC-338M12.4 (CAeditome ID:101928649)

Gene summary for CTC-338M12.4

Gene summary

Gene information	Gene symbol	CTC-338M12.4
	Gene ID	101928649
	Gene name	uncharacterized LOC101928649
	Synonyms	-
	Cytomap	5q35.3
	Type of gene	ncRNA
	Description	-
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for CTC-338M12.4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000233937.5

RNA A-to-I editing events in Cancer.

CAediting_455455(181248737, +), CAediting_455456(181248760, +), CAediting_455457(181248776, +), CAediting_455458(181248782, +), CAediting_455459(181248786, +), CAediting_455460(181248803, +), CAediting_455461(181248806, +), CAediting_455462(181248827, +), CAediting_455463(181248829, +), CAediting_455464(181248847, +), CAediting_455465(181248850, +), CAediting_455466(181248866, +), CAediting_455467(181248882, +), CAediting_455468(181248892, +), CAediting_455469(181248919, +), CAediting_455470(181248925, +), CAediting_455471(181248933, +), CAediting_455472(181248934, +), CAediting_455473(181248995, +), CAediting_455474(181248996, +), CAediting_455475(181248998, +), CAediting_455476(181249002, +), CAediting_455477(181249009, +), CAediting_455478(181249419, +), CAediting_455479(181249421, +), CAediting_455480(181249427, +), CAediting_455481(181249428, +), CAediting_455482(181249433, +), CAediting_455483(181249463, +), CAediting_455484(181249481, +), CAediting_455485(181249484, +), CAediting_455486(181249488, +), CAediting_455487(181249492, +), CAediting_455488(181249503, +), CAediting_455489(181249512, +), CAediting_455490(181249513, +), CAediting_455491(181249533, +), CAediting_455492(181249547, +), CAediting_455493(181249555, +), CAediting_455494(181249569, +), CAediting_455495(181249582, +), CAediting_455496(181249585, +), CAediting_455497(181249588, +), CAediting_455498(181249596, +), CAediting_455499(181249601, +), CAediting_455500(181249604, +), CAediting_455501(181249621, +), CAediting_455502(181249631, +), CAediting_455503(181249639, +), CAediting_455504(181249658, +), CAediting_455505(181249663, +), CAediting_455506(181249664, +), CAediting_455507(181249862, +), CAediting_455508(181249886, +), CAediting_455509(181249905, +), CAediting_455510(181249910, +), CAediting_455511(181249930, +), CAediting_455512(181249932, +), CAediting_455513(181249934, +), CAediting_455514(181249943, +), CAediting_455515(181249948, +), CAediting_455516(181249960, +), CAediting_455517(181249982, +), CAediting_455518(181249983, +), CAediting_455519(181250018, +), CAediting_455520(181250280, +), CAediting_455521(181250281, +), CAediting_455522(181250302, +), CAediting_455523(181250303, +), CAediting_455524(181250307, +), CAediting_455525(181250321, +), CAediting_455526(181250326, +), CAediting_455527(181250335, +), CAediting_455528(181250346, +), CAediting_455529(181250349, +), CAediting_455530(181250357, +), CAediting_455531(181250358, +), CAediting_455532(181250360, +), CAediting_455533(181250374, +), CAediting_455534(181250375, +), CAediting_455535(181250376, +), CAediting_455536(181250377, +), CAediting_455537(181250385, +), CAediting_455538(181250386, +), CAediting_455539(181250389, +), CAediting_455540(181250415, +), CAediting_455541(181250416, +), CAediting_455542(181250425, +), CAediting_455543(181250438, +), CAediting_455544(181250448, +), CAediting_455545(181250456, +), CAediting_455546(181250457, +), CAediting_455547(181250468, +), CAediting_455548(181250477, +), CAediting_455549(181250481, +), CAediting_455550(181250486, +), CAediting_455551(181250501, +), CAediting_455552(181250515, +), CAediting_455553(181250516, +), CAediting_455554(181250518, +), CAediting_455555(181250539, +), CAediting_455556(181250540, +), CAediting_455557(181250541, +), CAediting_455558(181250542, +), CAediting_455559(181250548, +), CAediting_455560(181251032, +), CAediting_455561(181251034, +), CAediting_455562(181251035, +), CAediting_455563(181251065, +), CAediting_455564(181251075, +), CAediting_455565(181251080, +), CAediting_455566(181251147, +), CAediting_455567(181251160, +), CAediting_455568(181251163, +), CAediting_455569(181251173, +), CAediting_455570(181251174, +), CAediting_455571(181251179, +), CAediting_455572(181251183, +), CAediting_455573(181251200, +), CAediting_455574(181251206, +), CAediting_455575(181251214, +), CAediting_455576(181251215, +), CAediting_455577(181251222, +), CAediting_455578(181251235, +), CAediting_455579(181251239, +), CAediting_455580(181251254, +), CAediting_455581(181251301, +), CAediting_455582(181253091, +), CAediting_455583(181253165, +), CAediting_455584(181253181, +), CAediting_455585(181253215, +), CAediting_455586(181253244, +), CAediting_455587(181253269, +), CAediting_455588(181253282, +), CAediting_455589(181253296, +), CAediting_455590(181253297, +), CAediting_455591(181253309, +), CAediting_455592(181253738, +), CAediting_455593(181253739, +), CAediting_455594(181253744, +), CAediting_455595(181253760, +), CAediting_455596(181253761, +), CAediting_455597(181253765, +), CAediting_455598(181253779, +), CAediting_455599(181253787, +), CAediting_455600(181253795, +), CAediting_455601(181253796, +), CAediting_455602(181253811, +), CAediting_455603(181253847, +), CAediting_455604(181253856, +), CAediting_455605(181253870, +), CAediting_455606(181253874, +), CAediting_455607(181253875, +), CAediting_455608(181253881, +), CAediting_455609(181253936, +), CAediting_455610(181253959, +), CAediting_455611(181254035, +), CAediting_455612(181254036, +), CAediting_455613(181254103, +), CAediting_455614(181254124, +), CAediting_455615(181254192, +), CAediting_455616(181254196, +), CAediting_455617(181254199, +), CAediting_455618(181254210, +), CAediting_455619(181254211, +), CAediting_455620(181254215, +), CAediting_455621(181254218, +), CAediting_455622(181254235, +), CAediting_455623(181254240, +), CAediting_455624(181254253, +), CAediting_455625(181254255, +), CAediting_455626(181254289, +), CAediting_455627(181254398, +), CAediting_455628(181254400, +), CAediting_455629(181261845, +), CAediting_455630(181262920, +), CAediting_455631(181262937, +), CAediting_455632(181262945, +), CAediting_455633(181262990, +), CAediting_455634(181262992, +), CAediting_455635(181262998, +), CAediting_455636(181263103, +), CAediting_455637(181263383, +), CAediting_455638(181264130, +), CAediting_455639(181264153, +), CAediting_455640(181264166, +), CAediting_455641(181264167, +), CAediting_455642(181264169, +), CAediting_455643(181264174, +), CAediting_455644(181264175, +), CAediting_455645(181264177, +), CAediting_455646(181264208, +), CAediting_455647(181264220, +), CAediting_455648(181264221, +), CAediting_455649(181264256, +), CAediting_455650(181264260, +), CAediting_455651(181264261, +), CAediting_455652(181264262, +), CAediting_455653(181264292, +), CAediting_455654(181264293, +), CAediting_455655(181264298, +), CAediting_455656(181264328, +), CAediting_455657(181264333, +), CAediting_455658(181264338, +), CAediting_455659(181264347, +), CAediting_455660(181264352, +), CAediting_455661(181264361, +), CAediting_455662(181264362, +), CAediting_455663(181264364, +), CAediting_455664(181264370, +), CAediting_455665(181264371, +), CAediting_455666(181264372, +), CAediting_455667(181264383, +), CAediting_455668(181264386, +), CAediting_455669(181264387, +), CAediting_455670(181264388, +), CAediting_455671(181264389, +), CAediting_455672(181264392, +), CAediting_455673(181264394, +), CAediting_455674(181264395, +), CAediting_455675(181264396, +), CAediting_455676(181264397, +), CAediting_455677(181264398, +), CAediting_455678(181264401, +), CAediting_455679(181264405, +), CAediting_455680(181264417, +), CAediting_455681(181264427, +), CAediting_455682(181264428, +), CAediting_455683(181264433, +), CAediting_455684(181264437, +), CAediting_455685(181264454, +), CAediting_455686(181264456, +), CAediting_455687(181264457, +), CAediting_455688(181264465, +), CAediting_455689(181264466, +), CAediting_455690(181264470, +), CAediting_455691(181264473, +), CAediting_455692(181264479, +), CAediting_455693(181264486, +), CAediting_455694(181264494, +), CAediting_455695(181264495, +), CAediting_455696(181264500, +), CAediting_455697(181264510, +), CAediting_455698(181264525, +), CAediting_455699(181264527, +), CAediting_455700(181264529, +), CAediting_455701(181264540, +), CAediting_455702(181271590, +), CAediting_455703(181271640, +), CAediting_455704(181271647, +), CAediting_455705(181271664, +), CAediting_455706(181271676, +), CAediting_455707(181271681, +), CAediting_455708(181271686, +),

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RNA editing positional annotations for CTC-338M12.4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_455455	chr5_181248737_+	ncRNA_intronic
CAediting_455456	chr5_181248760_+	ncRNA_intronic
CAediting_455457	chr5_181248776_+	ncRNA_intronic
CAediting_455458	chr5_181248782_+	ncRNA_intronic
CAediting_455459	chr5_181248786_+	ncRNA_intronic
CAediting_455460	chr5_181248803_+	ncRNA_intronic
CAediting_455461	chr5_181248806_+	ncRNA_intronic
CAediting_455462	chr5_181248827_+	ncRNA_intronic
CAediting_455463	chr5_181248829_+	ncRNA_intronic
CAediting_455464	chr5_181248847_+	ncRNA_intronic
CAediting_455465	chr5_181248850_+	ncRNA_intronic
CAediting_455466	chr5_181248866_+	ncRNA_intronic
CAediting_455467	chr5_181248882_+	ncRNA_intronic
CAediting_455468	chr5_181248892_+	ncRNA_intronic
CAediting_455469	chr5_181248919_+	ncRNA_intronic
CAediting_455470	chr5_181248925_+	ncRNA_intronic
CAediting_455471	chr5_181248933_+	ncRNA_intronic
CAediting_455472	chr5_181248934_+	ncRNA_intronic
CAediting_455473	chr5_181248995_+	ncRNA_intronic
CAediting_455474	chr5_181248996_+	ncRNA_intronic
CAediting_455475	chr5_181248998_+	ncRNA_intronic
CAediting_455476	chr5_181249002_+	ncRNA_intronic
CAediting_455477	chr5_181249009_+	ncRNA_intronic
CAediting_455478	chr5_181249419_+	ncRNA_intronic
CAediting_455479	chr5_181249421_+	ncRNA_intronic
CAediting_455480	chr5_181249427_+	ncRNA_intronic
CAediting_455481	chr5_181249428_+	ncRNA_intronic
CAediting_455482	chr5_181249433_+	ncRNA_intronic
CAediting_455483	chr5_181249463_+	ncRNA_intronic
CAediting_455484	chr5_181249481_+	ncRNA_intronic
CAediting_455485	chr5_181249484_+	ncRNA_intronic
CAediting_455486	chr5_181249488_+	ncRNA_intronic
CAediting_455487	chr5_181249492_+	ncRNA_intronic
CAediting_455488	chr5_181249503_+	ncRNA_intronic
CAediting_455489	chr5_181249512_+	ncRNA_intronic
CAediting_455490	chr5_181249513_+	ncRNA_intronic
CAediting_455491	chr5_181249533_+	ncRNA_intronic
CAediting_455492	chr5_181249547_+	ncRNA_intronic
CAediting_455493	chr5_181249555_+	ncRNA_intronic
CAediting_455494	chr5_181249569_+	ncRNA_intronic
CAediting_455495	chr5_181249582_+	ncRNA_intronic
CAediting_455496	chr5_181249585_+	ncRNA_intronic
CAediting_455497	chr5_181249588_+	ncRNA_intronic
CAediting_455498	chr5_181249596_+	ncRNA_intronic
CAediting_455499	chr5_181249601_+	ncRNA_intronic
CAediting_455500	chr5_181249604_+	ncRNA_intronic
CAediting_455501	chr5_181249621_+	ncRNA_intronic
CAediting_455502	chr5_181249631_+	ncRNA_intronic
CAediting_455503	chr5_181249639_+	ncRNA_intronic
CAediting_455504	chr5_181249658_+	ncRNA_intronic
CAediting_455505	chr5_181249663_+	ncRNA_intronic
CAediting_455506	chr5_181249664_+	ncRNA_intronic
CAediting_455507	chr5_181249862_+	ncRNA_intronic
CAediting_455508	chr5_181249886_+	ncRNA_intronic
CAediting_455509	chr5_181249905_+	ncRNA_intronic
CAediting_455510	chr5_181249910_+	ncRNA_intronic
CAediting_455511	chr5_181249930_+	ncRNA_intronic
CAediting_455512	chr5_181249932_+	ncRNA_intronic
CAediting_455513	chr5_181249934_+	ncRNA_intronic
CAediting_455514	chr5_181249943_+	ncRNA_intronic
CAediting_455515	chr5_181249948_+	ncRNA_intronic
CAediting_455516	chr5_181249960_+	ncRNA_intronic
CAediting_455517	chr5_181249982_+	ncRNA_intronic
CAediting_455518	chr5_181249983_+	ncRNA_intronic
CAediting_455519	chr5_181250018_+	ncRNA_intronic
CAediting_455520	chr5_181250280_+	ncRNA_intronic
CAediting_455521	chr5_181250281_+	ncRNA_intronic
CAediting_455522	chr5_181250302_+	ncRNA_intronic
CAediting_455523	chr5_181250303_+	ncRNA_intronic
CAediting_455524	chr5_181250307_+	ncRNA_intronic
CAediting_455525	chr5_181250321_+	ncRNA_intronic
CAediting_455526	chr5_181250326_+	ncRNA_intronic
CAediting_455527	chr5_181250335_+	ncRNA_intronic
CAediting_455528	chr5_181250346_+	ncRNA_intronic
CAediting_455529	chr5_181250349_+	ncRNA_intronic
CAediting_455530	chr5_181250357_+	ncRNA_intronic
CAediting_455531	chr5_181250358_+	ncRNA_intronic
CAediting_455532	chr5_181250360_+	ncRNA_intronic
CAediting_455533	chr5_181250374_+	ncRNA_intronic
CAediting_455534	chr5_181250375_+	ncRNA_intronic
CAediting_455535	chr5_181250376_+	ncRNA_intronic
CAediting_455536	chr5_181250377_+	ncRNA_intronic
CAediting_455537	chr5_181250385_+	ncRNA_intronic
CAediting_455538	chr5_181250386_+	ncRNA_intronic
CAediting_455539	chr5_181250389_+	ncRNA_intronic
CAediting_455540	chr5_181250415_+	ncRNA_intronic
CAediting_455541	chr5_181250416_+	ncRNA_intronic
CAediting_455542	chr5_181250425_+	ncRNA_intronic
CAediting_455543	chr5_181250438_+	ncRNA_intronic
CAediting_455544	chr5_181250448_+	ncRNA_intronic
CAediting_455545	chr5_181250456_+	ncRNA_intronic
CAediting_455546	chr5_181250457_+	ncRNA_intronic
CAediting_455547	chr5_181250468_+	ncRNA_intronic
CAediting_455548	chr5_181250477_+	ncRNA_intronic
CAediting_455549	chr5_181250481_+	ncRNA_intronic
CAediting_455550	chr5_181250486_+	ncRNA_intronic
CAediting_455551	chr5_181250501_+	ncRNA_intronic
CAediting_455552	chr5_181250515_+	ncRNA_intronic
CAediting_455553	chr5_181250516_+	ncRNA_intronic
CAediting_455554	chr5_181250518_+	ncRNA_intronic
CAediting_455555	chr5_181250539_+	ncRNA_intronic
CAediting_455556	chr5_181250540_+	ncRNA_intronic
CAediting_455557	chr5_181250541_+	ncRNA_intronic
CAediting_455558	chr5_181250542_+	ncRNA_intronic
CAediting_455559	chr5_181250548_+	ncRNA_intronic
CAediting_455560	chr5_181251032_+	ncRNA_intronic
CAediting_455561	chr5_181251034_+	ncRNA_intronic
CAediting_455562	chr5_181251035_+	ncRNA_intronic
CAediting_455563	chr5_181251065_+	ncRNA_intronic
CAediting_455564	chr5_181251075_+	ncRNA_intronic
CAediting_455565	chr5_181251080_+	ncRNA_intronic
CAediting_455566	chr5_181251147_+	ncRNA_intronic
CAediting_455567	chr5_181251160_+	ncRNA_intronic
CAediting_455568	chr5_181251163_+	ncRNA_intronic
CAediting_455569	chr5_181251173_+	ncRNA_intronic
CAediting_455570	chr5_181251174_+	ncRNA_intronic
CAediting_455571	chr5_181251179_+	ncRNA_intronic
CAediting_455572	chr5_181251183_+	ncRNA_intronic
CAediting_455573	chr5_181251200_+	ncRNA_intronic
CAediting_455574	chr5_181251206_+	ncRNA_intronic
CAediting_455575	chr5_181251214_+	ncRNA_intronic
CAediting_455576	chr5_181251215_+	ncRNA_intronic
CAediting_455577	chr5_181251222_+	ncRNA_intronic
CAediting_455578	chr5_181251235_+	ncRNA_intronic
CAediting_455579	chr5_181251239_+	ncRNA_intronic
CAediting_455580	chr5_181251254_+	ncRNA_intronic
CAediting_455581	chr5_181251301_+	ncRNA_intronic
CAediting_455582	chr5_181253091_+	ncRNA_intronic
CAediting_455583	chr5_181253165_+	ncRNA_intronic
CAediting_455584	chr5_181253181_+	ncRNA_intronic
CAediting_455585	chr5_181253215_+	ncRNA_intronic
CAediting_455586	chr5_181253244_+	ncRNA_intronic
CAediting_455587	chr5_181253269_+	ncRNA_intronic
CAediting_455588	chr5_181253282_+	ncRNA_intronic
CAediting_455589	chr5_181253296_+	ncRNA_intronic
CAediting_455590	chr5_181253297_+	ncRNA_intronic
CAediting_455591	chr5_181253309_+	ncRNA_intronic
CAediting_455592	chr5_181253738_+	ncRNA_intronic
CAediting_455593	chr5_181253739_+	ncRNA_intronic
CAediting_455594	chr5_181253744_+	ncRNA_intronic
CAediting_455595	chr5_181253760_+	ncRNA_intronic
CAediting_455596	chr5_181253761_+	ncRNA_intronic
CAediting_455597	chr5_181253765_+	ncRNA_intronic
CAediting_455598	chr5_181253779_+	ncRNA_intronic
CAediting_455599	chr5_181253787_+	ncRNA_intronic
CAediting_455600	chr5_181253795_+	ncRNA_intronic
CAediting_455601	chr5_181253796_+	ncRNA_intronic
CAediting_455602	chr5_181253811_+	ncRNA_intronic
CAediting_455603	chr5_181253847_+	ncRNA_intronic
CAediting_455604	chr5_181253856_+	ncRNA_intronic
CAediting_455605	chr5_181253870_+	ncRNA_intronic
CAediting_455606	chr5_181253874_+	ncRNA_intronic
CAediting_455607	chr5_181253875_+	ncRNA_intronic
CAediting_455608	chr5_181253881_+	ncRNA_intronic
CAediting_455609	chr5_181253936_+	ncRNA_intronic
CAediting_455610	chr5_181253959_+	ncRNA_intronic
CAediting_455611	chr5_181254035_+	ncRNA_intronic
CAediting_455612	chr5_181254036_+	ncRNA_intronic
CAediting_455613	chr5_181254103_+	ncRNA_intronic
CAediting_455614	chr5_181254124_+	ncRNA_intronic
CAediting_455615	chr5_181254192_+	ncRNA_intronic
CAediting_455616	chr5_181254196_+	ncRNA_intronic
CAediting_455617	chr5_181254199_+	ncRNA_intronic
CAediting_455618	chr5_181254210_+	ncRNA_intronic
CAediting_455619	chr5_181254211_+	ncRNA_intronic
CAediting_455620	chr5_181254215_+	ncRNA_intronic
CAediting_455621	chr5_181254218_+	ncRNA_intronic
CAediting_455622	chr5_181254235_+	ncRNA_intronic
CAediting_455623	chr5_181254240_+	ncRNA_intronic
CAediting_455624	chr5_181254253_+	ncRNA_intronic
CAediting_455625	chr5_181254255_+	ncRNA_intronic
CAediting_455626	chr5_181254289_+	ncRNA_intronic
CAediting_455627	chr5_181254398_+	ncRNA_intronic
CAediting_455628	chr5_181254400_+	ncRNA_intronic
CAediting_455629	chr5_181261845_+	ncRNA_intronic
CAediting_455630	chr5_181262920_+	ncRNA_intronic
CAediting_455631	chr5_181262937_+	ncRNA_intronic
CAediting_455632	chr5_181262945_+	ncRNA_intronic
CAediting_455633	chr5_181262990_+	ncRNA_intronic
CAediting_455634	chr5_181262992_+	ncRNA_intronic
CAediting_455635	chr5_181262998_+	ncRNA_intronic
CAediting_455636	chr5_181263103_+	ncRNA_intronic
CAediting_455637	chr5_181263383_+	ncRNA_intronic
CAediting_455638	chr5_181264130_+	ncRNA_exonic
CAediting_455639	chr5_181264153_+	ncRNA_exonic
CAediting_455640	chr5_181264166_+	ncRNA_exonic
CAediting_455641	chr5_181264167_+	ncRNA_exonic
CAediting_455642	chr5_181264169_+	ncRNA_exonic
CAediting_455643	chr5_181264174_+	ncRNA_exonic
CAediting_455644	chr5_181264175_+	ncRNA_exonic
CAediting_455645	chr5_181264177_+	ncRNA_exonic
CAediting_455646	chr5_181264208_+	ncRNA_exonic
CAediting_455647	chr5_181264220_+	ncRNA_exonic
CAediting_455648	chr5_181264221_+	ncRNA_exonic
CAediting_455649	chr5_181264256_+	ncRNA_exonic
CAediting_455650	chr5_181264260_+	ncRNA_exonic
CAediting_455651	chr5_181264261_+	ncRNA_exonic
CAediting_455652	chr5_181264262_+	ncRNA_intronic
CAediting_455653	chr5_181264292_+	ncRNA_intronic
CAediting_455654	chr5_181264293_+	ncRNA_intronic
CAediting_455655	chr5_181264298_+	ncRNA_intronic
CAediting_455656	chr5_181264328_+	ncRNA_intronic
CAediting_455657	chr5_181264333_+	ncRNA_intronic
CAediting_455658	chr5_181264338_+	ncRNA_intronic
CAediting_455659	chr5_181264347_+	ncRNA_intronic
CAediting_455660	chr5_181264352_+	ncRNA_intronic
CAediting_455661	chr5_181264361_+	ncRNA_intronic
CAediting_455662	chr5_181264362_+	ncRNA_intronic
CAediting_455663	chr5_181264364_+	ncRNA_intronic
CAediting_455664	chr5_181264370_+	ncRNA_intronic
CAediting_455665	chr5_181264371_+	ncRNA_intronic
CAediting_455666	chr5_181264372_+	ncRNA_intronic
CAediting_455667	chr5_181264383_+	ncRNA_intronic
CAediting_455668	chr5_181264386_+	ncRNA_intronic
CAediting_455669	chr5_181264387_+	ncRNA_intronic
CAediting_455670	chr5_181264388_+	ncRNA_intronic
CAediting_455671	chr5_181264389_+	ncRNA_intronic
CAediting_455672	chr5_181264392_+	ncRNA_intronic
CAediting_455673	chr5_181264394_+	ncRNA_intronic
CAediting_455674	chr5_181264395_+	ncRNA_intronic
CAediting_455675	chr5_181264396_+	ncRNA_intronic
CAediting_455676	chr5_181264397_+	ncRNA_intronic
CAediting_455677	chr5_181264398_+	ncRNA_intronic
CAediting_455678	chr5_181264401_+	ncRNA_intronic
CAediting_455679	chr5_181264405_+	ncRNA_intronic
CAediting_455680	chr5_181264417_+	ncRNA_intronic
CAediting_455681	chr5_181264427_+	ncRNA_intronic
CAediting_455682	chr5_181264428_+	ncRNA_intronic
CAediting_455683	chr5_181264433_+	ncRNA_intronic
CAediting_455684	chr5_181264437_+	ncRNA_intronic
CAediting_455685	chr5_181264454_+	ncRNA_intronic
CAediting_455686	chr5_181264456_+	ncRNA_intronic
CAediting_455687	chr5_181264457_+	ncRNA_intronic
CAediting_455688	chr5_181264465_+	ncRNA_intronic
CAediting_455689	chr5_181264466_+	ncRNA_intronic
CAediting_455690	chr5_181264470_+	ncRNA_intronic
CAediting_455691	chr5_181264473_+	ncRNA_intronic
CAediting_455692	chr5_181264479_+	ncRNA_intronic
CAediting_455693	chr5_181264486_+	ncRNA_intronic
CAediting_455694	chr5_181264494_+	ncRNA_intronic
CAediting_455695	chr5_181264495_+	ncRNA_intronic
CAediting_455696	chr5_181264500_+	ncRNA_intronic
CAediting_455697	chr5_181264510_+	ncRNA_intronic
CAediting_455698	chr5_181264525_+	ncRNA_intronic
CAediting_455699	chr5_181264527_+	ncRNA_intronic
CAediting_455700	chr5_181264529_+	ncRNA_intronic
CAediting_455701	chr5_181264540_+	ncRNA_intronic
CAediting_455702	chr5_181271590_+	ncRNA_exonic
CAediting_455703	chr5_181271640_+	ncRNA_exonic
CAediting_455704	chr5_181271647_+	ncRNA_exonic
CAediting_455705	chr5_181271664_+	ncRNA_exonic
CAediting_455706	chr5_181271676_+	ncRNA_exonic
CAediting_455707	chr5_181271681_+	ncRNA_exonic
CAediting_455708	chr5_181271686_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_455455	chr5_181248737_+	SINE	Alu	AluSc8
CAediting_455456	chr5_181248760_+	SINE	Alu	AluSc8
CAediting_455457	chr5_181248776_+	SINE	Alu	AluSc8
CAediting_455458	chr5_181248782_+	SINE	Alu	AluSc8
CAediting_455459	chr5_181248786_+	SINE	Alu	AluSc8
CAediting_455460	chr5_181248803_+	SINE	Alu	AluSc8
CAediting_455461	chr5_181248806_+	SINE	Alu	AluSc8
CAediting_455462	chr5_181248827_+	SINE	Alu	AluSc8
CAediting_455463	chr5_181248829_+	SINE	Alu	AluSc8
CAediting_455464	chr5_181248847_+	SINE	Alu	AluSc8
CAediting_455465	chr5_181248850_+	SINE	Alu	AluSc8
CAediting_455466	chr5_181248866_+	SINE	Alu	AluSc8
CAediting_455467	chr5_181248882_+	SINE	Alu	AluSc8
CAediting_455468	chr5_181248892_+	SINE	Alu	AluSc8
CAediting_455469	chr5_181248919_+	SINE	Alu	AluSc8
CAediting_455470	chr5_181248925_+	SINE	Alu	AluSc8
CAediting_455471	chr5_181248933_+	SINE	Alu	AluSc8
CAediting_455472	chr5_181248934_+	SINE	Alu	AluSc8
CAediting_455473	chr5_181248995_+	SINE	Alu	AluSc8
CAediting_455474	chr5_181248996_+	SINE	Alu	AluSc8
CAediting_455475	chr5_181248998_+	SINE	Alu	AluSc8
CAediting_455476	chr5_181249002_+	SINE	Alu	AluSc8
CAediting_455477	chr5_181249009_+	SINE	Alu	AluSc8
CAediting_455478	chr5_181249419_+	SINE	Alu	AluJo
CAediting_455479	chr5_181249421_+	SINE	Alu	AluJo
CAediting_455480	chr5_181249427_+	SINE	Alu	AluJo
CAediting_455481	chr5_181249428_+	SINE	Alu	AluJo
CAediting_455482	chr5_181249433_+	SINE	Alu	AluJo
CAediting_455483	chr5_181249463_+	SINE	Alu	AluJo
CAediting_455484	chr5_181249481_+	SINE	Alu	AluJo
CAediting_455485	chr5_181249484_+	SINE	Alu	AluJo
CAediting_455486	chr5_181249488_+	SINE	Alu	AluJo
CAediting_455487	chr5_181249492_+	SINE	Alu	AluJo
CAediting_455488	chr5_181249503_+	SINE	Alu	AluJo
CAediting_455489	chr5_181249512_+	SINE	Alu	AluJo
CAediting_455490	chr5_181249513_+	SINE	Alu	AluJo
CAediting_455491	chr5_181249533_+	SINE	Alu	AluJo
CAediting_455492	chr5_181249547_+	SINE	Alu	AluJo
CAediting_455493	chr5_181249555_+	SINE	Alu	AluJo
CAediting_455494	chr5_181249569_+	SINE	Alu	AluJo
CAediting_455495	chr5_181249582_+	SINE	Alu	AluJo
CAediting_455496	chr5_181249585_+	SINE	Alu	AluJo
CAediting_455497	chr5_181249588_+	SINE	Alu	AluJo
CAediting_455498	chr5_181249596_+	SINE	Alu	AluJo
CAediting_455499	chr5_181249601_+	SINE	Alu	AluJo
CAediting_455500	chr5_181249604_+	SINE	Alu	AluJo
CAediting_455501	chr5_181249621_+	SINE	Alu	AluJo
CAediting_455502	chr5_181249631_+	SINE	Alu	AluJo
CAediting_455503	chr5_181249639_+	SINE	Alu	AluJo
CAediting_455504	chr5_181249658_+	SINE	Alu	AluJo
CAediting_455505	chr5_181249663_+	SINE	Alu	AluJo
CAediting_455506	chr5_181249664_+	SINE	Alu	AluJo
CAediting_455507	chr5_181249862_+	SINE	Alu	AluSx
CAediting_455508	chr5_181249886_+	SINE	Alu	AluSx
CAediting_455509	chr5_181249905_+	SINE	Alu	AluSx
CAediting_455510	chr5_181249910_+	SINE	Alu	AluSx
CAediting_455511	chr5_181249930_+	SINE	Alu	AluSx
CAediting_455512	chr5_181249932_+	SINE	Alu	AluSx
CAediting_455513	chr5_181249934_+	SINE	Alu	AluSx
CAediting_455514	chr5_181249943_+	SINE	Alu	AluSx
CAediting_455515	chr5_181249948_+	SINE	Alu	AluSx
CAediting_455516	chr5_181249960_+	SINE	Alu	AluSx
CAediting_455517	chr5_181249982_+	SINE	Alu	AluSx
CAediting_455518	chr5_181249983_+	SINE	Alu	AluSx
CAediting_455519	chr5_181250018_+	SINE	Alu	AluSx
CAediting_455520	chr5_181250280_+	SINE	Alu	AluSz
CAediting_455521	chr5_181250281_+	SINE	Alu	AluSz
CAediting_455522	chr5_181250302_+	SINE	Alu	AluSz
CAediting_455523	chr5_181250303_+	SINE	Alu	AluSz
CAediting_455524	chr5_181250307_+	SINE	Alu	AluSz
CAediting_455525	chr5_181250321_+	SINE	Alu	AluSz
CAediting_455526	chr5_181250326_+	SINE	Alu	AluSz
CAediting_455527	chr5_181250335_+	SINE	Alu	AluSz
CAediting_455528	chr5_181250346_+	SINE	Alu	AluSz
CAediting_455529	chr5_181250349_+	SINE	Alu	AluSz
CAediting_455530	chr5_181250357_+	SINE	Alu	AluSz
CAediting_455531	chr5_181250358_+	SINE	Alu	AluSz
CAediting_455532	chr5_181250360_+	SINE	Alu	AluSz
CAediting_455533	chr5_181250374_+	SINE	Alu	AluSz
CAediting_455534	chr5_181250375_+	SINE	Alu	AluSz
CAediting_455535	chr5_181250376_+	SINE	Alu	AluSz
CAediting_455536	chr5_181250377_+	SINE	Alu	AluSz
CAediting_455537	chr5_181250385_+	SINE	Alu	AluSz
CAediting_455538	chr5_181250386_+	SINE	Alu	AluSz
CAediting_455539	chr5_181250389_+	SINE	Alu	AluSz
CAediting_455540	chr5_181250415_+	SINE	Alu	AluSz
CAediting_455541	chr5_181250416_+	SINE	Alu	AluSz
CAediting_455542	chr5_181250425_+	SINE	Alu	AluSz
CAediting_455543	chr5_181250438_+	SINE	Alu	AluSz
CAediting_455544	chr5_181250448_+	SINE	Alu	AluSz
CAediting_455545	chr5_181250456_+	SINE	Alu	AluSz
CAediting_455546	chr5_181250457_+	SINE	Alu	AluSz
CAediting_455547	chr5_181250468_+	SINE	Alu	AluSz
CAediting_455548	chr5_181250477_+	SINE	Alu	AluSz
CAediting_455549	chr5_181250481_+	SINE	Alu	AluSz
CAediting_455550	chr5_181250486_+	SINE	Alu	AluSz
CAediting_455551	chr5_181250501_+	SINE	Alu	AluSz
CAediting_455552	chr5_181250515_+	SINE	Alu	AluSz
CAediting_455553	chr5_181250516_+	SINE	Alu	AluSz
CAediting_455554	chr5_181250518_+	SINE	Alu	AluSz
CAediting_455555	chr5_181250539_+	SINE	Alu	AluSz
CAediting_455556	chr5_181250540_+	SINE	Alu	AluSz
CAediting_455557	chr5_181250541_+	SINE	Alu	AluSz
CAediting_455558	chr5_181250542_+	SINE	Alu	AluSz
CAediting_455559	chr5_181250548_+	SINE	Alu	AluSz
CAediting_455560	chr5_181251032_+	SINE	Alu	AluSq2
CAediting_455561	chr5_181251034_+	SINE	Alu	AluSq2
CAediting_455562	chr5_181251035_+	SINE	Alu	AluSq2
CAediting_455563	chr5_181251065_+	SINE	Alu	AluSq2
CAediting_455564	chr5_181251075_+	SINE	Alu	AluSq2
CAediting_455565	chr5_181251080_+	SINE	Alu	AluSq2
CAediting_455566	chr5_181251147_+	SINE	Alu	AluSq2
CAediting_455567	chr5_181251160_+	SINE	Alu	AluSq2
CAediting_455568	chr5_181251163_+	SINE	Alu	AluSq2
CAediting_455569	chr5_181251173_+	SINE	Alu	AluSq2
CAediting_455570	chr5_181251174_+	SINE	Alu	AluSq2
CAediting_455571	chr5_181251179_+	SINE	Alu	AluSq2
CAediting_455572	chr5_181251183_+	SINE	Alu	AluSq2
CAediting_455573	chr5_181251200_+	SINE	Alu	AluSq2
CAediting_455574	chr5_181251206_+	SINE	Alu	AluSq2
CAediting_455575	chr5_181251214_+	SINE	Alu	AluSq2
CAediting_455576	chr5_181251215_+	SINE	Alu	AluSq2
CAediting_455577	chr5_181251222_+	SINE	Alu	AluSq2
CAediting_455578	chr5_181251235_+	SINE	Alu	AluSq2
CAediting_455579	chr5_181251239_+	SINE	Alu	AluSq2
CAediting_455580	chr5_181251254_+	SINE	Alu	AluSq2
CAediting_455581	chr5_181251301_+	SINE	Alu	AluSq2
CAediting_455582	chr5_181253091_+	SINE	Alu	AluSp
CAediting_455583	chr5_181253165_+	SINE	Alu	AluSp
CAediting_455584	chr5_181253181_+	SINE	Alu	AluSp
CAediting_455585	chr5_181253215_+	SINE	Alu	AluSp
CAediting_455586	chr5_181253244_+	SINE	Alu	AluSp
CAediting_455587	chr5_181253269_+	SINE	Alu	AluSp
CAediting_455588	chr5_181253282_+	SINE	Alu	AluSp
CAediting_455589	chr5_181253296_+	SINE	Alu	AluSp
CAediting_455590	chr5_181253297_+	SINE	Alu	AluSp
CAediting_455591	chr5_181253309_+	SINE	Alu	AluSp
CAediting_455592	chr5_181253738_+	SINE	Alu	AluJr
CAediting_455593	chr5_181253739_+	SINE	Alu	AluJr
CAediting_455594	chr5_181253744_+	SINE	Alu	AluJr
CAediting_455595	chr5_181253760_+	SINE	Alu	AluJr
CAediting_455596	chr5_181253761_+	SINE	Alu	AluJr
CAediting_455597	chr5_181253765_+	SINE	Alu	AluJr
CAediting_455598	chr5_181253779_+	SINE	Alu	AluJr
CAediting_455599	chr5_181253787_+	SINE	Alu	AluJr
CAediting_455600	chr5_181253795_+	SINE	Alu	AluJr
CAediting_455601	chr5_181253796_+	SINE	Alu	AluJr
CAediting_455602	chr5_181253811_+	SINE	Alu	AluJr
CAediting_455603	chr5_181253847_+	SINE	Alu	AluJr
CAediting_455604	chr5_181253856_+	SINE	Alu	AluJr
CAediting_455605	chr5_181253870_+	SINE	Alu	AluJr
CAediting_455606	chr5_181253874_+	SINE	Alu	AluJr
CAediting_455607	chr5_181253875_+	SINE	Alu	AluJr
CAediting_455608	chr5_181253881_+	SINE	Alu	AluJr
CAediting_455609	chr5_181253936_+	SINE	Alu	AluJr
CAediting_455610	chr5_181253959_+	SINE	Alu	AluJr
CAediting_455611	chr5_181254035_+	SINE	Alu	AluY
CAediting_455612	chr5_181254036_+	SINE	Alu	AluY
CAediting_455613	chr5_181254103_+	SINE	Alu	AluY
CAediting_455614	chr5_181254124_+	SINE	Alu	AluY
CAediting_455615	chr5_181254192_+	SINE	Alu	AluY
CAediting_455616	chr5_181254196_+	SINE	Alu	AluY
CAediting_455617	chr5_181254199_+	SINE	Alu	AluY
CAediting_455618	chr5_181254210_+	SINE	Alu	AluY
CAediting_455619	chr5_181254211_+	SINE	Alu	AluY
CAediting_455620	chr5_181254215_+	SINE	Alu	AluY
CAediting_455621	chr5_181254218_+	SINE	Alu	AluY
CAediting_455622	chr5_181254235_+	SINE	Alu	AluY
CAediting_455623	chr5_181254240_+	SINE	Alu	AluY
CAediting_455624	chr5_181254253_+	SINE	Alu	AluY
CAediting_455625	chr5_181254255_+	SINE	Alu	AluY
CAediting_455626	chr5_181254289_+	SINE	Alu	AluY
CAediting_455627	chr5_181254398_+	SINE	Alu	AluSc8
CAediting_455628	chr5_181254400_+	SINE	Alu	AluSc8
CAediting_455630	chr5_181262920_+	SINE	Alu	AluJb
CAediting_455631	chr5_181262937_+	SINE	Alu	AluJb
CAediting_455632	chr5_181262945_+	SINE	Alu	AluJb
CAediting_455633	chr5_181262990_+	SINE	Alu	AluJb
CAediting_455634	chr5_181262992_+	SINE	Alu	AluJb
CAediting_455635	chr5_181262998_+	SINE	Alu	AluJb
CAediting_455636	chr5_181263103_+	SINE	Alu	FAM
CAediting_455637	chr5_181263383_+	SINE	Alu	AluJo
CAediting_455638	chr5_181264130_+	SINE	Alu	AluJr
CAediting_455639	chr5_181264153_+	SINE	Alu	AluJr
CAediting_455640	chr5_181264166_+	SINE	Alu	AluJr
CAediting_455641	chr5_181264167_+	SINE	Alu	AluJr
CAediting_455642	chr5_181264169_+	SINE	Alu	AluJr
CAediting_455643	chr5_181264174_+	SINE	Alu	AluJr
CAediting_455644	chr5_181264175_+	SINE	Alu	AluJr
CAediting_455645	chr5_181264177_+	SINE	Alu	AluJr
CAediting_455646	chr5_181264208_+	SINE	Alu	AluJr
CAediting_455647	chr5_181264220_+	SINE	Alu	AluJr
CAediting_455648	chr5_181264221_+	SINE	Alu	AluJr
CAediting_455649	chr5_181264256_+	SINE	Alu	AluJr
CAediting_455650	chr5_181264260_+	SINE	Alu	AluJr
CAediting_455651	chr5_181264261_+	SINE	Alu	AluJr
CAediting_455652	chr5_181264262_+	SINE	Alu	AluJr
CAediting_455653	chr5_181264292_+	SINE	Alu	AluSx1
CAediting_455654	chr5_181264293_+	SINE	Alu	AluSx1
CAediting_455655	chr5_181264298_+	SINE	Alu	AluSx1
CAediting_455656	chr5_181264328_+	SINE	Alu	AluSx1
CAediting_455657	chr5_181264333_+	SINE	Alu	AluSx1
CAediting_455658	chr5_181264338_+	SINE	Alu	AluSx1
CAediting_455659	chr5_181264347_+	SINE	Alu	AluSx1
CAediting_455660	chr5_181264352_+	SINE	Alu	AluSx1
CAediting_455661	chr5_181264361_+	SINE	Alu	AluSx1
CAediting_455662	chr5_181264362_+	SINE	Alu	AluSx1
CAediting_455663	chr5_181264364_+	SINE	Alu	AluSx1
CAediting_455664	chr5_181264370_+	SINE	Alu	AluSx1
CAediting_455665	chr5_181264371_+	SINE	Alu	AluSx1
CAediting_455666	chr5_181264372_+	SINE	Alu	AluSx1
CAediting_455667	chr5_181264383_+	SINE	Alu	AluSx1
CAediting_455668	chr5_181264386_+	SINE	Alu	AluSx1
CAediting_455669	chr5_181264387_+	SINE	Alu	AluSx1
CAediting_455670	chr5_181264388_+	SINE	Alu	AluSx1
CAediting_455671	chr5_181264389_+	SINE	Alu	AluSx1
CAediting_455672	chr5_181264392_+	SINE	Alu	AluSx1
CAediting_455673	chr5_181264394_+	SINE	Alu	AluSx1
CAediting_455674	chr5_181264395_+	SINE	Alu	AluSx1
CAediting_455675	chr5_181264396_+	SINE	Alu	AluSx1
CAediting_455676	chr5_181264397_+	SINE	Alu	AluSx1
CAediting_455677	chr5_181264398_+	SINE	Alu	AluSx1
CAediting_455678	chr5_181264401_+	SINE	Alu	AluSx1
CAediting_455679	chr5_181264405_+	SINE	Alu	AluSx1
CAediting_455680	chr5_181264417_+	SINE	Alu	AluSx1
CAediting_455681	chr5_181264427_+	SINE	Alu	AluSx1
CAediting_455682	chr5_181264428_+	SINE	Alu	AluSx1
CAediting_455683	chr5_181264433_+	SINE	Alu	AluSx1
CAediting_455684	chr5_181264437_+	SINE	Alu	AluSx1
CAediting_455685	chr5_181264454_+	SINE	Alu	AluSx1
CAediting_455686	chr5_181264456_+	SINE	Alu	AluSx1
CAediting_455687	chr5_181264457_+	SINE	Alu	AluSx1
CAediting_455688	chr5_181264465_+	SINE	Alu	AluSx1
CAediting_455689	chr5_181264466_+	SINE	Alu	AluSx1
CAediting_455690	chr5_181264470_+	SINE	Alu	AluSx1
CAediting_455691	chr5_181264473_+	SINE	Alu	AluSx1
CAediting_455692	chr5_181264479_+	SINE	Alu	AluSx1
CAediting_455693	chr5_181264486_+	SINE	Alu	AluSx1
CAediting_455694	chr5_181264494_+	SINE	Alu	AluSx1
CAediting_455695	chr5_181264495_+	SINE	Alu	AluSx1
CAediting_455696	chr5_181264500_+	SINE	Alu	AluSx1
CAediting_455697	chr5_181264510_+	SINE	Alu	AluSx1
CAediting_455698	chr5_181264525_+	SINE	Alu	AluSx1
CAediting_455699	chr5_181264527_+	SINE	Alu	AluSx1
CAediting_455700	chr5_181264529_+	SINE	Alu	AluSx1
CAediting_455701	chr5_181264540_+	SINE	Alu	AluSx1
CAediting_455702	chr5_181271590_+	SINE	Alu	AluSc8
CAediting_455703	chr5_181271640_+	SINE	Alu	AluSc8
CAediting_455704	chr5_181271647_+	SINE	Alu	AluSc8
CAediting_455705	chr5_181271664_+	SINE	Alu	AluSc8
CAediting_455706	chr5_181271676_+	SINE	Alu	AluSc8
CAediting_455707	chr5_181271681_+	SINE	Alu	AluSc8
CAediting_455708	chr5_181271686_+	SINE	Alu	AluSc8

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RNA A-to-I editing events in the alternative splicing sites for CTC-338M12.4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000233937.5.CTC-338M12.4.

Correlation between RNA A-to-I editing and PSI for ENSG00000233937.5.CTC-338M12.4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CTC-338M12.4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_455620.ENSG00000233937.CTC-338M12.4.png
Soverview

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Protein coding region RNA A-to-I editings for CTC-338M12.4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CTC-338M12.4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-1247-3p	181271636	181271642	7mer-m8	181271621	181271643	156	-24.72
CAediting_455704	chr5_181271647_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4539	181271642	181271647	6mer	181271629	181271648	145	-20.41
CAediting_455704	chr5_181271647_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-6078	181271644	181271651	8mer-1a	181271633	181271651	149	-21.5
CAediting_455708	chr5_181271686_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-17-3p	181271683	181271916	8mer-1a	181271668	181271916	154	-20.45
CAediting_455702	chr5_181271590_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-3940-3p	181271588	181271594	7mer-m8	181271574	181271595	140	-22.6
CAediting_455706	chr5_181271676_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-3157-5p	181271675	181271681	7mer-m8	181271654	181271682	142	-24.52
CAediting_455706	chr5_181271676_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4691-3p	181271674	181271681	8mer-1a	181271654	181271681	150	-21.67
CAediting_455707	chr5_181271681_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-5588-3p	181271679	181271686	8mer-1a	181271667	181271686	148	-14.95
CAediting_455707	chr5_181271681_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-7977	181271677	181271683	7mer-m8	181271667	181271684	142	-13.37

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-3689a-3p	181271634	181271640	7mer-m8	181271618	181271641	151	-26.41
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-3689b-3p	181271634	181271640	7mer-m8	181271618	181271641	151	-29.08
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-3689c	181271634	181271640	7mer-m8	181271618	181271641	151	-29.08
CAediting_455708	chr5_181271686_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4474-5p	181271680	181271686	7mer-m8	181271665	181271687	147	-10.75
CAediting_455707	chr5_181271681_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4474-5p	181271680	181271686	7mer-m8	181271665	181271687	147	-10.75
CAediting_455705	chr5_181271664_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4478	181271662	181271668	7mer-m8	181271654	181271669	149	-25.05
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-6779-5p	181271634	181271640	7mer-m8	181271621	181271641	152	-29.77
CAediting_455703	chr5_181271640_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-6780a-5p	181271634	181271640	7mer-m8	181271621	181271641	150	-25.93
CAediting_455707	chr5_181271681_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-6787-3p	181271676	181271683	8mer-1a	181271662	181271683	151	-18.79
CAediting_455705	chr5_181271664_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-7160-5p	181271660	181271666	7mer-m8	181271647	181271667	146	-20.4

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000233937.5	ENST00000417281.2	hsa-miR-200b-3p	181247856	181247862	7mer-m8	181247842	181247863	152	-16.35
CAediting_1054808	chr15_66496985_-	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4512	181247213	181247219	7mer-m8	181247200	181247220	149	-21.52
CAediting_1229415	chr17_67471547_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-548aa	181246721	181246727	7mer-m8	181246703	181246728	147	-15.2
CAediting_1054808	chr15_66496985_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-4512	181247213	181247219	7mer-m8	181247200	181247220	149	-21.52
CAediting_1229415	chr17_67471547_+	ENSG00000233937.5	ENST00000505151.4	hsa-miR-548aa	181257251	181257256	6mer	181257234	181257257	144	-12.9
CAediting_1160181	chr17_7017644_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-195-3p	181257301	181257308	8mer-1a	181257287	181257308	140	-6.25
CAediting_1160181	chr17_7017644_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-195-3p	181257522	181257528	7mer-m8	181257508	181257529	147	-9.56
CAediting_1368054	chr19_46709310_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-320e	181246951	181246957	7mer-m8	181246942	181246958	154	-21.45
CAediting_1399425	chr20_1392958_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-6869-5p	181257393	181257400	8mer-1a	181257379	181257400	156	-23.12
CAediting_524911	chr7_5495852_-	ENSG00000233937.5	ENST00000505151.4	hsa-miR-589-3p	181246973	181246978	6mer	181246956	181246979	140	-23.03
CAediting_1229415	chr17_67471547_+	ENSG00000233937.5	ENST00000417281.2	hsa-miR-548aa	181257251	181257256	6mer	181257234	181257257	144	-12.9
CAediting_1160181	chr17_7017644_-	ENSG00000233937.5	ENST00000417281.2	hsa-miR-195-3p	181257301	181257308	8mer-1a	181257287	181257308	140	-6.25
CAediting_1160181	chr17_7017644_-	ENSG00000233937.5	ENST00000417281.2	hsa-miR-195-3p	181257522	181257528	7mer-m8	181257508	181257529	147	-9.56
CAediting_1399425	chr20_1392958_-	ENSG00000233937.5	ENST00000417281.2	hsa-miR-6869-5p	181257393	181257400	8mer-1a	181257379	181257400	156	-23.12

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000233937.5	ENST00000511331.4	hsa-miR-4512	181272011	181272017	7mer-m8	181271997	181272018	142	-16.03
CAediting_1229415	chr17_67471547_+	ENSG00000233937.5	ENST00000511331.4	hsa-miR-548aa	181246648	181246653	6mer	181246630	181246654	140	-13.04
CAediting_688080	chr9_63819626_+	ENSG00000233937.5	ENST00000505151.4	hsa-miR-4477b	181257370	181257376	7mer-m8	181257354	181257377	151	-13.72
CAediting_688080	chr9_63819626_+	ENSG00000233937.5	ENST00000417281.2	hsa-miR-4477b	181257370	181257376	7mer-m8	181257354	181257377	151	-13.72

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CTC-338M12.4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000511331.4	antisense

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_455702	ENST00000511331.4	chr5_181271590_+	-394.00	-394.70	-405.60
CAediting_455703	ENST00000511331.4	chr5_181271640_+	-396.90	-394.70	-405.60
CAediting_455704	ENST00000511331.4	chr5_181271647_+	-400.40	-394.70	-405.60
CAediting_455705	ENST00000511331.4	chr5_181271664_+	-399.00	-394.70	-405.60
CAediting_455706	ENST00000511331.4	chr5_181271676_+	-398.70	-394.70	-405.60
CAediting_455707	ENST00000511331.4	chr5_181271681_+	-393.80	-394.70	-405.60
CAediting_455708	ENST00000511331.4	chr5_181271686_+	-396.60	-394.70	-405.60

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Relation with ADAR for CTC-338M12.4

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LAML	CAediting_455620	chr5_181254215_+	0.00566356180268558	0.368302433355192	.	.	.	.

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Relation with cancer stages for CTC-338M12.4

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_455481	chr5_181249428_+	0.0232536791827974	0.297656506879242

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Relation with survival for CTC-338M12.4

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CTC-338M12.4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CTC-338M12.4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene