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Editing gene: RCL1 (CAeditome ID:10171)

Gene summary for RCL1

Gene summary

Gene information	Gene symbol	RCL1
	Gene ID	10171
	Gene name	RNA terminal phosphate cyclase like 1
	Synonyms	RNAC\|RPCL1
	Cytomap	9p24.1
	Type of gene	protein-coding
	Description	RNA 3'-terminal phosphate cyclase-like proteinRNA cyclase homolog
	Modification date	20210519
	UniProtAcc	Q9Y2P8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for RCL1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000120158.10

RNA A-to-I editing events in Cancer.

CAediting_675654(4808433, +), CAediting_675655(4811127, +), CAediting_675656(4811128, +), CAediting_675657(4811139, +), CAediting_675658(4811611, +), CAediting_675659(4811720, +), CAediting_675660(4811721, +), CAediting_675661(4811739, +), CAediting_675662(4811799, +), CAediting_675663(4811800, +), CAediting_675664(4811878, +), CAediting_675665(4811944, +), CAediting_675666(4818679, +), CAediting_675667(4818705, +), CAediting_675668(4818751, +), CAediting_675669(4821191, +), CAediting_675670(4825935, +), CAediting_675671(4825936, +), CAediting_675672(4826228, +), CAediting_675673(4828065, +), CAediting_675674(4828092, +), CAediting_675675(4831576, +), CAediting_675676(4831581, +), CAediting_675677(4831589, +), CAediting_675678(4831594, +), CAediting_675679(4831602, +), CAediting_675680(4831606, +), CAediting_675681(4831616, +), CAediting_675682(4831653, +), CAediting_675683(4832687, +), CAediting_675684(4832710, +), CAediting_675685(4832714, +), CAediting_675686(4832729, +), CAediting_675687(4832753, +), CAediting_675688(4854892, +), CAediting_675689(4854895, +), CAediting_675690(4854896, +), CAediting_675691(4854994, +), CAediting_675692(4857962, +), CAediting_675693(4858013, +), CAediting_675694(4858137, +), CAediting_675695(4859707, +), CAediting_675696(4859709, +), CAediting_675697(4859723, +), CAediting_675698(4859732, +), CAediting_675699(4859777, +), CAediting_675700(4859793, +), CAediting_675701(4865705, +), CAediting_675702(4868347, +), CAediting_675703(4868487, +), CAediting_675704(4868532, +), CAediting_675705(4868934, +), CAediting_675706(4868952, +), CAediting_675707(4869005, +), CAediting_675708(4869056, +), CAediting_675709(4869487, +), CAediting_675710(4870149, +), CAediting_675711(4870175, +), CAediting_675712(4870372, +), CAediting_675713(4873897, +), CAediting_675714(4874015, +), CAediting_675715(4874016, +), CAediting_675716(4874048, +), CAediting_675717(4877942, +), CAediting_675718(4878037, +), CAediting_675719(4878040, +), CAediting_675720(4881222, +), CAediting_675721(4881240, +), CAediting_675722(4881307, +), CAediting_675723(4881313, +), CAediting_675724(4881327, +), CAediting_675725(4881328, +), CAediting_675726(4881351, +), CAediting_675727(4881357, +), CAediting_675728(4881358, +), CAediting_675729(4881371, +), CAediting_675730(4881385, +), CAediting_675731(4881390, +), CAediting_675732(4881419, +), CAediting_675733(4881430, +), CAediting_675734(4884373, +), CAediting_675735(4884374, +), CAediting_675736(4885037, +), CAediting_675737(4885085, +), CAediting_675738(4885093, +), CAediting_675739(4885094, +), CAediting_675740(4885097, +), CAediting_675741(4885151, +), CAediting_675742(4885165, +), CAediting_675743(4885182, +), CAediting_675744(4885655, +), CAediting_675745(4885663, +), CAediting_675746(4885673, +), CAediting_675747(4885678, +), CAediting_675748(4885684, +), CAediting_675749(4885687, +), CAediting_675750(4885692, +), CAediting_675751(4885702, +), CAediting_675752(4885707, +), CAediting_675753(4885710, +), CAediting_675754(4885721, +), CAediting_675755(4885733, +), CAediting_675756(4885739, +), CAediting_675757(4885747, +), CAediting_675758(4885753, +), CAediting_675759(4885758, +), CAediting_675760(4885771, +), CAediting_675761(4885774, +), CAediting_675762(4885806, +), CAediting_675763(4885814, +), CAediting_675764(4885817, +), CAediting_675765(4885823, +), CAediting_675766(4885830, +), CAediting_675767(4885858, +), CAediting_675768(4885865, +), CAediting_675769(4885873, +), CAediting_675770(4885899, +),

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RNA editing positional annotations for RCL1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_675654	chr9_4808433_+	ncRNA_intronic
CAediting_675655	chr9_4811127_+	ncRNA_intronic
CAediting_675656	chr9_4811128_+	ncRNA_intronic
CAediting_675657	chr9_4811139_+	ncRNA_intronic
CAediting_675658	chr9_4811611_+	ncRNA_intronic
CAediting_675659	chr9_4811720_+	ncRNA_intronic
CAediting_675660	chr9_4811721_+	ncRNA_intronic
CAediting_675661	chr9_4811739_+	ncRNA_intronic
CAediting_675662	chr9_4811799_+	ncRNA_intronic
CAediting_675663	chr9_4811800_+	ncRNA_intronic
CAediting_675664	chr9_4811878_+	ncRNA_intronic
CAediting_675665	chr9_4811944_+	ncRNA_intronic
CAediting_675666	chr9_4818679_+	ncRNA_intronic
CAediting_675667	chr9_4818705_+	ncRNA_intronic
CAediting_675668	chr9_4818751_+	ncRNA_intronic
CAediting_675669	chr9_4821191_+	ncRNA_intronic
CAediting_675670	chr9_4825935_+	ncRNA_intronic
CAediting_675671	chr9_4825936_+	ncRNA_intronic
CAediting_675672	chr9_4826228_+	ncRNA_intronic
CAediting_675673	chr9_4828065_+	ncRNA_intronic
CAediting_675674	chr9_4828092_+	ncRNA_intronic
CAediting_675675	chr9_4831576_+	ncRNA_intronic
CAediting_675676	chr9_4831581_+	ncRNA_intronic
CAediting_675677	chr9_4831589_+	ncRNA_intronic
CAediting_675678	chr9_4831594_+	ncRNA_intronic
CAediting_675679	chr9_4831602_+	ncRNA_intronic
CAediting_675680	chr9_4831606_+	ncRNA_intronic
CAediting_675681	chr9_4831616_+	ncRNA_intronic
CAediting_675682	chr9_4831653_+	ncRNA_intronic
CAediting_675683	chr9_4832687_+	ncRNA_intronic
CAediting_675684	chr9_4832710_+	ncRNA_intronic
CAediting_675685	chr9_4832714_+	ncRNA_intronic
CAediting_675686	chr9_4832729_+	ncRNA_intronic
CAediting_675687	chr9_4832753_+	ncRNA_intronic
CAediting_675688	chr9_4854892_+	intronic
CAediting_675689	chr9_4854895_+	intronic
CAediting_675690	chr9_4854896_+	intronic
CAediting_675691	chr9_4854994_+	intronic
CAediting_675692	chr9_4857962_+	intronic
CAediting_675693	chr9_4858013_+	intronic
CAediting_675694	chr9_4858137_+	intronic
CAediting_675695	chr9_4859707_+	intronic
CAediting_675696	chr9_4859709_+	intronic
CAediting_675697	chr9_4859723_+	intronic
CAediting_675698	chr9_4859732_+	intronic
CAediting_675699	chr9_4859777_+	intronic
CAediting_675700	chr9_4859793_+	intronic
CAediting_675701	chr9_4865705_+	ncRNA_intronic
CAediting_675702	chr9_4868347_+	ncRNA_intronic
CAediting_675703	chr9_4868487_+	ncRNA_intronic
CAediting_675704	chr9_4868532_+	ncRNA_intronic
CAediting_675705	chr9_4868934_+	ncRNA_intronic
CAediting_675706	chr9_4868952_+	ncRNA_intronic
CAediting_675707	chr9_4869005_+	ncRNA_intronic
CAediting_675708	chr9_4869056_+	ncRNA_intronic
CAediting_675709	chr9_4869487_+	ncRNA_intronic
CAediting_675710	chr9_4870149_+	ncRNA_intronic
CAediting_675711	chr9_4870175_+	ncRNA_intronic
CAediting_675712	chr9_4870372_+	ncRNA_intronic
CAediting_675713	chr9_4873897_+	ncRNA_intronic
CAediting_675714	chr9_4874015_+	ncRNA_intronic
CAediting_675715	chr9_4874016_+	ncRNA_intronic
CAediting_675716	chr9_4874048_+	ncRNA_intronic
CAediting_675717	chr9_4877942_+	ncRNA_intronic
CAediting_675718	chr9_4878037_+	ncRNA_intronic
CAediting_675719	chr9_4878040_+	ncRNA_intronic
CAediting_675720	chr9_4881222_+	ncRNA_intronic
CAediting_675721	chr9_4881240_+	ncRNA_intronic
CAediting_675722	chr9_4881307_+	ncRNA_intronic
CAediting_675723	chr9_4881313_+	ncRNA_intronic
CAediting_675724	chr9_4881327_+	ncRNA_intronic
CAediting_675725	chr9_4881328_+	ncRNA_intronic
CAediting_675726	chr9_4881351_+	ncRNA_intronic
CAediting_675727	chr9_4881357_+	ncRNA_intronic
CAediting_675728	chr9_4881358_+	ncRNA_intronic
CAediting_675729	chr9_4881371_+	ncRNA_intronic
CAediting_675730	chr9_4881385_+	ncRNA_intronic
CAediting_675731	chr9_4881390_+	ncRNA_intronic
CAediting_675732	chr9_4881419_+	ncRNA_intronic
CAediting_675733	chr9_4881430_+	ncRNA_intronic
CAediting_675734	chr9_4884373_+	ncRNA_intronic
CAediting_675735	chr9_4884374_+	ncRNA_intronic
CAediting_675736	chr9_4885037_+	ncRNA_exonic
CAediting_675737	chr9_4885085_+	ncRNA_exonic
CAediting_675738	chr9_4885093_+	ncRNA_exonic
CAediting_675739	chr9_4885094_+	ncRNA_exonic
CAediting_675740	chr9_4885097_+	ncRNA_exonic
CAediting_675741	chr9_4885151_+	ncRNA_exonic
CAediting_675742	chr9_4885165_+	ncRNA_exonic
CAediting_675743	chr9_4885182_+	ncRNA_exonic
CAediting_675744	chr9_4885655_+	ncRNA_exonic
CAediting_675745	chr9_4885663_+	ncRNA_exonic
CAediting_675746	chr9_4885673_+	ncRNA_exonic
CAediting_675747	chr9_4885678_+	ncRNA_exonic
CAediting_675748	chr9_4885684_+	ncRNA_exonic
CAediting_675749	chr9_4885687_+	ncRNA_exonic
CAediting_675750	chr9_4885692_+	ncRNA_exonic
CAediting_675751	chr9_4885702_+	ncRNA_exonic
CAediting_675752	chr9_4885707_+	ncRNA_exonic
CAediting_675753	chr9_4885710_+	ncRNA_exonic
CAediting_675754	chr9_4885721_+	ncRNA_exonic
CAediting_675755	chr9_4885733_+	ncRNA_exonic
CAediting_675756	chr9_4885739_+	ncRNA_exonic
CAediting_675757	chr9_4885747_+	ncRNA_exonic
CAediting_675758	chr9_4885753_+	ncRNA_exonic
CAediting_675759	chr9_4885758_+	ncRNA_exonic
CAediting_675760	chr9_4885771_+	ncRNA_exonic
CAediting_675761	chr9_4885774_+	ncRNA_exonic
CAediting_675762	chr9_4885806_+	ncRNA_exonic
CAediting_675763	chr9_4885814_+	ncRNA_exonic
CAediting_675764	chr9_4885817_+	ncRNA_exonic
CAediting_675765	chr9_4885823_+	ncRNA_exonic
CAediting_675766	chr9_4885830_+	ncRNA_exonic
CAediting_675767	chr9_4885858_+	ncRNA_exonic
CAediting_675768	chr9_4885865_+	ncRNA_exonic
CAediting_675769	chr9_4885873_+	ncRNA_exonic
CAediting_675770	chr9_4885899_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_675654	chr9_4808433_+	SINE	Alu	AluJb
CAediting_675655	chr9_4811127_+	SINE	Alu	AluJr
CAediting_675656	chr9_4811128_+	SINE	Alu	AluJr
CAediting_675657	chr9_4811139_+	SINE	Alu	AluJr
CAediting_675658	chr9_4811611_+	LINE	L1	L1MA5
CAediting_675659	chr9_4811720_+	LINE	L1	L1MA5
CAediting_675660	chr9_4811721_+	LINE	L1	L1MA5
CAediting_675661	chr9_4811739_+	LINE	L1	L1MA5
CAediting_675662	chr9_4811799_+	LINE	L1	L1MA5
CAediting_675663	chr9_4811800_+	LINE	L1	L1MA5
CAediting_675664	chr9_4811878_+	LINE	L1	L1MA5
CAediting_675665	chr9_4811944_+	LINE	L1	L1MA5
CAediting_675666	chr9_4818679_+	SINE	Alu	AluSc8
CAediting_675667	chr9_4818705_+	SINE	Alu	AluSc8
CAediting_675668	chr9_4818751_+	SINE	Alu	AluSc8
CAediting_675669	chr9_4821191_+	SINE	Alu	AluJr
CAediting_675670	chr9_4825935_+	SINE	Alu	FLAM_C
CAediting_675671	chr9_4825936_+	SINE	Alu	FLAM_C
CAediting_675672	chr9_4826228_+	SINE	Alu	AluJb
CAediting_675673	chr9_4828065_+	SINE	Alu	AluYh3a3
CAediting_675674	chr9_4828092_+	SINE	Alu	AluYh3a3
CAediting_675675	chr9_4831576_+	SINE	Alu	AluJr
CAediting_675676	chr9_4831581_+	SINE	Alu	AluJr
CAediting_675677	chr9_4831589_+	SINE	Alu	AluJr
CAediting_675678	chr9_4831594_+	SINE	Alu	AluJr
CAediting_675679	chr9_4831602_+	SINE	Alu	AluJr
CAediting_675680	chr9_4831606_+	SINE	Alu	AluJr
CAediting_675681	chr9_4831616_+	SINE	Alu	AluJr
CAediting_675682	chr9_4831653_+	SINE	Alu	AluJr
CAediting_675683	chr9_4832687_+	SINE	Alu	AluSc
CAediting_675684	chr9_4832710_+	SINE	Alu	AluSc
CAediting_675685	chr9_4832714_+	SINE	Alu	AluSc
CAediting_675686	chr9_4832729_+	SINE	Alu	AluSc
CAediting_675687	chr9_4832753_+	SINE	Alu	AluSc
CAediting_675688	chr9_4854892_+	SINE	Alu	AluSg
CAediting_675689	chr9_4854895_+	SINE	Alu	AluSg
CAediting_675690	chr9_4854896_+	SINE	Alu	AluSg
CAediting_675691	chr9_4854994_+	SINE	Alu	AluSg
CAediting_675692	chr9_4857962_+	SINE	Alu	AluJr4
CAediting_675693	chr9_4858013_+	SINE	Alu	AluJr4
CAediting_675694	chr9_4858137_+	SINE	Alu	AluJr4
CAediting_675695	chr9_4859707_+	SINE	Alu	FLAM_C
CAediting_675696	chr9_4859709_+	SINE	Alu	FLAM_C
CAediting_675697	chr9_4859723_+	SINE	Alu	FLAM_C
CAediting_675698	chr9_4859732_+	SINE	Alu	FLAM_C
CAediting_675699	chr9_4859777_+	SINE	Alu	FLAM_C
CAediting_675700	chr9_4859793_+	SINE	Alu	FLAM_C
CAediting_675701	chr9_4865705_+	SINE	Alu	AluSz6
CAediting_675702	chr9_4868347_+	SINE	Alu	AluSq
CAediting_675703	chr9_4868487_+	SINE	Alu	AluSq
CAediting_675704	chr9_4868532_+	SINE	Alu	AluSq
CAediting_675705	chr9_4868934_+	SINE	Alu	AluSg7
CAediting_675706	chr9_4868952_+	SINE	Alu	AluSg7
CAediting_675707	chr9_4869005_+	SINE	Alu	AluSg7
CAediting_675708	chr9_4869056_+	SINE	Alu	AluSg7
CAediting_675709	chr9_4869487_+	SINE	Alu	AluSx1
CAediting_675710	chr9_4870149_+	SINE	Alu	AluJr
CAediting_675711	chr9_4870175_+	SINE	Alu	AluJr
CAediting_675712	chr9_4870372_+	SINE	Alu	AluJr
CAediting_675713	chr9_4873897_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675714	chr9_4874015_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675715	chr9_4874016_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675716	chr9_4874048_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675717	chr9_4877942_+	SINE	Alu	AluJr
CAediting_675718	chr9_4878037_+	SINE	Alu	AluJr
CAediting_675719	chr9_4878040_+	SINE	Alu	AluJr
CAediting_675720	chr9_4881222_+	SINE	Alu	AluSx1
CAediting_675721	chr9_4881240_+	SINE	Alu	AluSx1
CAediting_675722	chr9_4881307_+	SINE	Alu	AluSx1
CAediting_675723	chr9_4881313_+	SINE	Alu	AluSx1
CAediting_675724	chr9_4881327_+	SINE	Alu	AluSx1
CAediting_675725	chr9_4881328_+	SINE	Alu	AluSx1
CAediting_675726	chr9_4881351_+	SINE	Alu	AluSx1
CAediting_675727	chr9_4881357_+	SINE	Alu	AluSx1
CAediting_675728	chr9_4881358_+	SINE	Alu	AluSx1
CAediting_675729	chr9_4881371_+	SINE	Alu	AluSx1
CAediting_675730	chr9_4881385_+	SINE	Alu	AluSx1
CAediting_675731	chr9_4881390_+	SINE	Alu	AluSx1
CAediting_675732	chr9_4881419_+	SINE	Alu	AluSx1
CAediting_675733	chr9_4881430_+	SINE	Alu	AluSx1
CAediting_675734	chr9_4884373_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675735	chr9_4884374_+	LTR	ERVL-MaLR	MLT1A0
CAediting_675736	chr9_4885037_+	SINE	Alu	AluSq2
CAediting_675737	chr9_4885085_+	SINE	Alu	AluSq2
CAediting_675738	chr9_4885093_+	SINE	Alu	AluSq2
CAediting_675739	chr9_4885094_+	SINE	Alu	AluSq2
CAediting_675740	chr9_4885097_+	SINE	Alu	AluSq2
CAediting_675741	chr9_4885151_+	SINE	Alu	AluSq2
CAediting_675742	chr9_4885165_+	SINE	Alu	AluSq2
CAediting_675743	chr9_4885182_+	SINE	Alu	AluSq2
CAediting_675744	chr9_4885655_+	SINE	Alu	AluJb
CAediting_675745	chr9_4885663_+	SINE	Alu	AluJb
CAediting_675746	chr9_4885673_+	SINE	Alu	AluJb
CAediting_675747	chr9_4885678_+	SINE	Alu	AluJb
CAediting_675748	chr9_4885684_+	SINE	Alu	AluJb
CAediting_675749	chr9_4885687_+	SINE	Alu	AluJb
CAediting_675750	chr9_4885692_+	SINE	Alu	AluJb
CAediting_675751	chr9_4885702_+	SINE	Alu	AluJb
CAediting_675752	chr9_4885707_+	SINE	Alu	AluJb
CAediting_675753	chr9_4885710_+	SINE	Alu	AluJb
CAediting_675754	chr9_4885721_+	SINE	Alu	AluJb
CAediting_675755	chr9_4885733_+	SINE	Alu	AluJb
CAediting_675756	chr9_4885739_+	SINE	Alu	AluJb
CAediting_675757	chr9_4885747_+	SINE	Alu	AluJb
CAediting_675758	chr9_4885753_+	SINE	Alu	AluJb
CAediting_675759	chr9_4885758_+	SINE	Alu	AluJb
CAediting_675760	chr9_4885771_+	SINE	Alu	AluJb
CAediting_675761	chr9_4885774_+	SINE	Alu	AluJb
CAediting_675762	chr9_4885806_+	SINE	Alu	AluJb
CAediting_675763	chr9_4885814_+	SINE	Alu	AluJb
CAediting_675764	chr9_4885817_+	SINE	Alu	AluJb
CAediting_675765	chr9_4885823_+	SINE	Alu	AluJb
CAediting_675766	chr9_4885830_+	SINE	Alu	AluJb
CAediting_675767	chr9_4885858_+	SINE	Alu	AluJb
CAediting_675768	chr9_4885865_+	SINE	Alu	AluJb
CAediting_675769	chr9_4885873_+	SINE	Alu	AluJb
CAediting_675770	chr9_4885899_+	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for RCL1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000120158.10.RCL1.

Correlation between RNA A-to-I editing and PSI for ENSG00000120158.10.RCL1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RCL1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RCL1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RCL1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000120158.10	ENST00000381730	hsa-miR-4512	4860291	4860298	8mer-1a	4860275	4860298	147	-15.77
CAediting_1229413	chr17_67471544_+	ENSG00000120158.10	ENST00000381730	hsa-miR-548aa	4860439	4860445	7mer-m8	4860421	4860446	146	-11.56
CAediting_1054808	chr15_66496985_-	ENSG00000120158.10	ENST00000448872	hsa-miR-4512	4860291	4860298	8mer-1a	4860275	4860298	147	-15.77
CAediting_1229413	chr17_67471544_+	ENSG00000120158.10	ENST00000448872	hsa-miR-548aa	4860439	4860445	7mer-m8	4860421	4860446	146	-11.56

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000120158.10	ENST00000448872	hsa-miR-548aa	4860698	4860704	7mer-m8	4860681	4860705	140	-9.21
CAediting_748296	chr10_51299626_+	ENSG00000120158.10	ENST00000448872	hsa-miR-605-3p	4860531	4860538	8mer-1a	4860518	4860538	146	-13.19
CAediting_468389	chr6_31355314_-	ENSG00000120158.10	ENST00000448872	hsa-miR-6891-5p	4860685	4860691	7mer-m8	4860674	4860692	145	-17.76

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RCL1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for RCL1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for RCL1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for RCL1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for RCL1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RCL1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
RCL1	C0152013	Adenocarcinoma of lung (disorder)	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene