CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SCHLAP1 (CAeditome ID:101669767)

Gene summary for SCHLAP1

check button Gene summary
Gene informationGene symbol

SCHLAP1

Gene ID

101669767

Gene nameSWI/SNF complex antagonist associated with prostate cancer 1
SynonymsLINC00913|PCAT11|PCAT114
Cytomap

2q31.3

Type of genencRNA
DescriptionSWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)Second Chromosome Locus Associated with Prostate 1long intergenic non-protein coding RNA 913prostate cancer associated transcript 11
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for SCHLAP1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000281131.1

check button RNA A-to-I editing events in Cancer.
CAediting_228106(180753118, +), CAediting_228107(180754446, +), CAediting_228108(180764445, +), CAediting_228109(180785865, +), CAediting_228110(180785888, +), CAediting_228111(180785895, +), CAediting_228112(180815418, +), CAediting_228113(180815444, +), CAediting_228114(180815445, +), CAediting_228115(180828273, +), CAediting_228116(180828322, +), CAediting_228117(180828404, +), CAediting_228118(180840808, +), CAediting_228119(180840823, +), CAediting_228120(180840824, +), CAediting_228121(180840858, +), CAediting_228122(180840863, +), CAediting_228123(180840868, +), CAediting_228124(180840869, +), CAediting_228125(180840882, +), CAediting_228126(180840891, +), CAediting_228127(180840900, +), CAediting_228128(180840901, +), CAediting_228129(180840902, +), CAediting_228130(180840922, +), CAediting_228131(180840932, +), CAediting_228132(180840936, +), CAediting_228133(180840958, +), CAediting_228134(180840959, +), CAediting_228135(180840968, +), CAediting_228136(180840985, +), CAediting_228137(180840998, +), CAediting_228138(180840999, +), CAediting_228139(180841000, +), CAediting_228140(180843449, +), CAediting_228141(180843466, +), CAediting_228142(180854538, +), CAediting_228143(180854544, +), CAediting_228144(180854554, +), CAediting_228145(180854561, +), CAediting_228146(180854585, +), CAediting_228147(180854620, +), CAediting_228148(180854625, +), CAediting_228149(180854635, +), CAediting_228150(180855144, +), CAediting_228151(180855154, +), CAediting_228152(180855288, +), CAediting_228153(180866463, +), CAediting_228154(180866535, +), CAediting_228155(180866634, +), CAediting_228156(180866637, +), CAediting_228157(180866647, +), CAediting_228158(180866718, +), CAediting_228159(180868736, +), CAediting_228160(180868909, +), CAediting_228161(180868915, +), CAediting_228162(180868924, +), CAediting_228163(180868950, +), CAediting_228164(180868963, +), CAediting_228165(180888325, +), CAediting_228166(180888384, +), CAediting_228167(180888400, +), CAediting_228168(180888964, +), CAediting_228169(180888983, +), CAediting_228170(180888987, +), CAediting_228171(180888994, +), CAediting_228172(180889012, +), CAediting_228173(180895770, +), CAediting_228174(180896168, +), CAediting_228175(180896173, +), CAediting_228176(180896178, +), CAediting_228177(180896182, +), CAediting_228178(180896280, +), CAediting_228179(180896294, +), CAediting_228180(180896331, +), CAediting_228181(180909802, +), CAediting_228182(180909808, +), CAediting_228183(180909843, +), CAediting_228184(180909855, +), CAediting_228185(180916724, +), CAediting_228186(180916757, +), CAediting_228187(180916774, +), CAediting_228188(180916778, +), CAediting_228189(180916919, +), CAediting_228190(180916920, +),

Top

RNA editing positional annotations for SCHLAP1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_228106chr2_180753118_+ncRNA_intronic
CAediting_228107chr2_180754446_+ncRNA_intronic
CAediting_228108chr2_180764445_+ncRNA_intronic
CAediting_228109chr2_180785865_+ncRNA_intronic
CAediting_228110chr2_180785888_+ncRNA_intronic
CAediting_228111chr2_180785895_+ncRNA_intronic
CAediting_228112chr2_180815418_+ncRNA_intronic
CAediting_228113chr2_180815444_+ncRNA_intronic
CAediting_228114chr2_180815445_+ncRNA_intronic
CAediting_228115chr2_180828273_+ncRNA_intronic
CAediting_228116chr2_180828322_+ncRNA_intronic
CAediting_228117chr2_180828404_+ncRNA_intronic
CAediting_228118chr2_180840808_+ncRNA_intronic
CAediting_228119chr2_180840823_+ncRNA_intronic
CAediting_228120chr2_180840824_+ncRNA_intronic
CAediting_228121chr2_180840858_+ncRNA_intronic
CAediting_228122chr2_180840863_+ncRNA_intronic
CAediting_228123chr2_180840868_+ncRNA_intronic
CAediting_228124chr2_180840869_+ncRNA_intronic
CAediting_228125chr2_180840882_+ncRNA_intronic
CAediting_228126chr2_180840891_+ncRNA_intronic
CAediting_228127chr2_180840900_+ncRNA_intronic
CAediting_228128chr2_180840901_+ncRNA_intronic
CAediting_228129chr2_180840902_+ncRNA_intronic
CAediting_228130chr2_180840922_+ncRNA_intronic
CAediting_228131chr2_180840932_+ncRNA_intronic
CAediting_228132chr2_180840936_+ncRNA_intronic
CAediting_228133chr2_180840958_+ncRNA_intronic
CAediting_228134chr2_180840959_+ncRNA_intronic
CAediting_228135chr2_180840968_+ncRNA_intronic
CAediting_228136chr2_180840985_+ncRNA_intronic
CAediting_228137chr2_180840998_+ncRNA_intronic
CAediting_228138chr2_180840999_+ncRNA_intronic
CAediting_228139chr2_180841000_+ncRNA_intronic
CAediting_228140chr2_180843449_+ncRNA_intronic
CAediting_228141chr2_180843466_+ncRNA_intronic
CAediting_228142chr2_180854538_+ncRNA_intronic
CAediting_228143chr2_180854544_+ncRNA_intronic
CAediting_228144chr2_180854554_+ncRNA_intronic
CAediting_228145chr2_180854561_+ncRNA_intronic
CAediting_228146chr2_180854585_+ncRNA_intronic
CAediting_228147chr2_180854620_+ncRNA_intronic
CAediting_228148chr2_180854625_+ncRNA_intronic
CAediting_228149chr2_180854635_+ncRNA_intronic
CAediting_228150chr2_180855144_+ncRNA_intronic
CAediting_228151chr2_180855154_+ncRNA_intronic
CAediting_228152chr2_180855288_+ncRNA_intronic
CAediting_228153chr2_180866463_+ncRNA_intronic
CAediting_228154chr2_180866535_+ncRNA_intronic
CAediting_228155chr2_180866634_+ncRNA_intronic
CAediting_228156chr2_180866637_+ncRNA_intronic
CAediting_228157chr2_180866647_+ncRNA_intronic
CAediting_228158chr2_180866718_+ncRNA_intronic
CAediting_228159chr2_180868736_+ncRNA_intronic
CAediting_228160chr2_180868909_+ncRNA_intronic
CAediting_228161chr2_180868915_+ncRNA_intronic
CAediting_228162chr2_180868924_+ncRNA_intronic
CAediting_228163chr2_180868950_+ncRNA_intronic
CAediting_228164chr2_180868963_+ncRNA_intronic
CAediting_228165chr2_180888325_+ncRNA_intronic
CAediting_228166chr2_180888384_+ncRNA_intronic
CAediting_228167chr2_180888400_+ncRNA_intronic
CAediting_228168chr2_180888964_+ncRNA_intronic
CAediting_228169chr2_180888983_+ncRNA_intronic
CAediting_228170chr2_180888987_+ncRNA_intronic
CAediting_228171chr2_180888994_+ncRNA_intronic
CAediting_228172chr2_180889012_+ncRNA_intronic
CAediting_228173chr2_180895770_+ncRNA_intronic
CAediting_228174chr2_180896168_+ncRNA_intronic
CAediting_228175chr2_180896173_+ncRNA_intronic
CAediting_228176chr2_180896178_+ncRNA_intronic
CAediting_228177chr2_180896182_+ncRNA_intronic
CAediting_228178chr2_180896280_+ncRNA_intronic
CAediting_228179chr2_180896294_+ncRNA_intronic
CAediting_228180chr2_180896331_+ncRNA_intronic
CAediting_228181chr2_180909802_+ncRNA_intronic
CAediting_228182chr2_180909808_+ncRNA_intronic
CAediting_228183chr2_180909843_+ncRNA_intronic
CAediting_228184chr2_180909855_+ncRNA_intronic
CAediting_228185chr2_180916724_+ncRNA_exonic
CAediting_228186chr2_180916757_+ncRNA_exonic
CAediting_228187chr2_180916774_+ncRNA_exonic
CAediting_228188chr2_180916778_+ncRNA_exonic
CAediting_228189chr2_180916919_+ncRNA_exonic
CAediting_228190chr2_180916920_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_228106chr2_180753118_+SINEAluAluJo
CAediting_228107chr2_180754446_+SINEAluAluJb
CAediting_228108chr2_180764445_+SINEAluAluSq2
CAediting_228109chr2_180785865_+LINEL1L1PA4
CAediting_228110chr2_180785888_+LINEL1L1PA4
CAediting_228111chr2_180785895_+LINEL1L1PA4
CAediting_228112chr2_180815418_+SINEAluAluJr
CAediting_228113chr2_180815444_+SINEAluAluJr
CAediting_228114chr2_180815445_+SINEAluAluJr
CAediting_228115chr2_180828273_+SINEAluAluYm1
CAediting_228116chr2_180828322_+SINEAluAluYm1
CAediting_228117chr2_180828404_+SINEAluAluYm1
CAediting_228118chr2_180840808_+SINEAluAluSx1
CAediting_228119chr2_180840823_+SINEAluAluSx1
CAediting_228120chr2_180840824_+SINEAluAluSx1
CAediting_228121chr2_180840858_+SINEAluAluSx1
CAediting_228122chr2_180840863_+SINEAluAluSx1
CAediting_228123chr2_180840868_+SINEAluAluSx1
CAediting_228124chr2_180840869_+SINEAluAluSx1
CAediting_228125chr2_180840882_+SINEAluAluSx1
CAediting_228126chr2_180840891_+SINEAluAluSx1
CAediting_228127chr2_180840900_+SINEAluAluSx1
CAediting_228128chr2_180840901_+SINEAluAluSx1
CAediting_228129chr2_180840902_+SINEAluAluSx1
CAediting_228130chr2_180840922_+SINEAluAluSx1
CAediting_228131chr2_180840932_+SINEAluAluSx1
CAediting_228132chr2_180840936_+SINEAluAluSx1
CAediting_228133chr2_180840958_+SINEAluAluSx1
CAediting_228134chr2_180840959_+SINEAluAluSx1
CAediting_228135chr2_180840968_+SINEAluAluSx1
CAediting_228136chr2_180840985_+SINEAluAluSx1
CAediting_228137chr2_180840998_+SINEAluAluSx1
CAediting_228138chr2_180840999_+SINEAluAluSx1
CAediting_228139chr2_180841000_+SINEAluAluSx1
CAediting_228140chr2_180843449_+SINEAluAluSx
CAediting_228141chr2_180843466_+SINEAluAluSx
CAediting_228142chr2_180854538_+SINEAluAluSx
CAediting_228143chr2_180854544_+SINEAluAluSx
CAediting_228144chr2_180854554_+SINEAluAluSx
CAediting_228145chr2_180854561_+SINEAluAluSx
CAediting_228146chr2_180854585_+SINEAluAluSx
CAediting_228147chr2_180854620_+SINEAluAluSx
CAediting_228148chr2_180854625_+SINEAluAluSx
CAediting_228149chr2_180854635_+SINEAluAluSx
CAediting_228150chr2_180855144_+SINEAluAluYk2
CAediting_228151chr2_180855154_+SINEAluAluYk2
CAediting_228152chr2_180855288_+SINEAluAluYk2
CAediting_228153chr2_180866463_+LINEL1L1M2
CAediting_228154chr2_180866535_+LINEL1L1M2
CAediting_228155chr2_180866634_+LINEL1L1M2
CAediting_228156chr2_180866637_+LINEL1L1M2
CAediting_228157chr2_180866647_+LINEL1L1M2
CAediting_228158chr2_180866718_+LINEL1L1M2
CAediting_228159chr2_180868736_+SINEAluAluJb
CAediting_228160chr2_180868909_+SINEAluAluJb
CAediting_228161chr2_180868915_+SINEAluAluJb
CAediting_228162chr2_180868924_+SINEAluAluJb
CAediting_228163chr2_180868950_+SINEAluAluJb
CAediting_228164chr2_180868963_+SINEAluAluJb
CAediting_228165chr2_180888325_+LINEL1L1MA4A
CAediting_228166chr2_180888384_+LINEL1L1MA4A
CAediting_228167chr2_180888400_+LINEL1L1MA4A
CAediting_228168chr2_180888964_+LINEL1L1MA4A
CAediting_228169chr2_180888983_+LINEL1L1MA4A
CAediting_228170chr2_180888987_+LINEL1L1MA4A
CAediting_228171chr2_180888994_+LINEL1L1MA4A
CAediting_228172chr2_180889012_+LINEL1L1MA4A
CAediting_228173chr2_180895770_+LINEL1L1MA4A
CAediting_228174chr2_180896168_+LINEL1L1MA4A
CAediting_228175chr2_180896173_+LINEL1L1MA4A
CAediting_228176chr2_180896178_+LINEL1L1MA4A
CAediting_228177chr2_180896182_+LINEL1L1MA4A
CAediting_228178chr2_180896280_+LINEL1L1MA4A
CAediting_228179chr2_180896294_+LINEL1L1MA4A
CAediting_228180chr2_180896331_+LINEL1L1MA4A
CAediting_228181chr2_180909802_+SINEAluAluSc8
CAediting_228182chr2_180909808_+SINEAluAluSc8
CAediting_228183chr2_180909843_+SINEAluAluSc8
CAediting_228184chr2_180909855_+SINEAluAluSc8
CAediting_228185chr2_180916724_+LTRERVL-MaLRTHE1B
CAediting_228186chr2_180916757_+LTRERVL-MaLRTHE1B
CAediting_228187chr2_180916774_+LTRERVL-MaLRTHE1B
CAediting_228188chr2_180916778_+LTRERVL-MaLRTHE1B
CAediting_228189chr2_180916919_+LTRERVL-MaLRTHE1B
CAediting_228190chr2_180916920_+LTRERVL-MaLRTHE1B

Top

RNA A-to-I editing events in the alternative splicing sites for SCHLAP1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000281131.1.SCHLAP1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000281131.1.SCHLAP1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SCHLAP1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for SCHLAP1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for SCHLAP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228188chr2_180916778_+ENSG00000281131.1ENST00000629145.1hsa-miR-7161-3p1809167761809167827mer-m8180916755180916783150-18.03
CAediting_228187chr2_180916774_+ENSG00000281131.1ENST00000629145.1hsa-miR-450a-5p1809167721809167798mer-1a180916755180916779154-16.31

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228189chr2_180916919_+ENSG00000281131.1ENST00000629145.1hsa-miR-329-5p1809169191809169246mer180916902180916925140-25.95
CAediting_228190chr2_180916920_+ENSG00000281131.1ENST00000629145.1hsa-miR-329-5p1809169191809169246mer180916902180916925140-25.95
CAediting_228185chr2_180916724_+ENSG00000281131.1ENST00000629145.1hsa-miR-4666a-3p1809167191809167257mer-m8180916707180916726141-7.82

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000281131.1ENST00000629145.1hsa-miR-1304-3p1806922591806922668mer-1a180692245180692266140-18.13
CAediting_846604chr11_93733708_-ENSG00000281131.1ENST00000629145.1hsa-miR-1304-3p1806921581806921658mer-1a180692146180692165145-17.23
CAediting_1306324chr19_13836464_-ENSG00000281131.1ENST00000629145.1hsa-miR-27a-3p1806923601806923667mer-m8180692343180692367156-22.07
CAediting_573001chr7_92204086_-ENSG00000281131.1ENST00000629145.1hsa-miR-1285-5p1806923941806924007mer-m8180692381180692401150-20.49

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1306324chr19_13836464_-ENSG00000281131.1ENST00000629145.1hsa-miR-27a-3p1809165811809165888mer-1a180916568180916588149-15.59
CAediting_1306324chr19_13836464_-ENSG00000281131.1ENST00000629145.1hsa-miR-27a-3p1809168781809168847mer-m8180916865180916885140-12.7
CAediting_1306324chr19_13836464_-ENSG00000281131.1ENST00000629145.1hsa-miR-27a-3p1809169051809169117mer-m8180916893180916912146-15.96

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for SCHLAP1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000629145.1lincRNASoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_228185ENST00000629145.1chr2_180916724_+-404.30-403.70-404.60
CAediting_228186ENST00000629145.1chr2_180916757_+-406.00-403.70-404.60
CAediting_228187ENST00000629145.1chr2_180916774_+-403.10-403.70-404.60
CAediting_228188ENST00000629145.1chr2_180916778_+-403.80-403.70-404.60
CAediting_228189ENST00000629145.1chr2_180916919_+-403.90-403.70-404.60
CAediting_228190ENST00000629145.1chr2_180916920_+-403.80-403.70-404.60

Top

Relation with ADAR for SCHLAP1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_228122chr2_180840863_+..0.04996122870042720.230315816317686..
PRADCAediting_228124chr2_180840869_+..0.03251979956852810.21508332517529..
PRADCAediting_228186chr2_180916757_+3.821152576213e-050.4652762161098660.02916679234853190.257219444943165..
PRADCAediting_228189chr2_180916919_+..0.02059230384914610.274358954939641..

Top

Relation with cancer stages for SCHLAP1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for SCHLAP1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for SCHLAP1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SCHLAP1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SCHLAP1C0027627Neoplasm Metastasis1CTD_human
SCHLAP1C0033578Prostatic Neoplasms1CTD_human
SCHLAP1C0376358Malignant neoplasm of prostate1CTD_human