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Editing gene: MRPS31P4 (CAeditome ID:100885866)

Gene summary for MRPS31P4

Gene summary

Gene information	Gene symbol	MRPS31P4
	Gene ID	100885866
	Gene name	mitochondrial ribosomal protein S31 pseudogene 4
	Synonyms	-
	Cytomap	13q14.3
	Type of gene	pseudo
	Description	-
	Modification date	20210203
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for MRPS31P4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000250299.4

RNA A-to-I editing events in Cancer.

CAediting_966370(52619085, +), CAediting_966371(52619862, +), CAediting_966372(52624910, +), CAediting_966373(52624920, +), CAediting_966374(52624972, +), CAediting_966375(52628179, +), CAediting_966376(52628215, +), CAediting_966377(52628217, +), CAediting_966378(52628233, +), CAediting_966379(52628236, +), CAediting_966380(52628237, +), CAediting_966381(52628296, +), CAediting_966382(52628322, +), CAediting_966383(52628332, +), CAediting_966384(52628362, +), CAediting_966385(52628363, +), CAediting_966386(52628899, +), CAediting_966387(52628906, +), CAediting_966388(52628932, +), CAediting_966389(52628975, +), CAediting_966390(52628980, +), CAediting_966391(52628993, +), CAediting_966392(52629002, +), CAediting_966393(52629005, +), CAediting_966394(52629015, +), CAediting_966395(52629055, +), CAediting_966396(52629076, +), CAediting_966397(52629110, +), CAediting_966398(52629137, +), CAediting_966399(52629138, +), CAediting_966400(52629139, +), CAediting_966401(52629150, +), CAediting_966402(52629152, +), CAediting_966403(52629159, +), CAediting_966404(52629797, +), CAediting_966405(52629800, +), CAediting_966406(52629801, +), CAediting_966407(52629807, +), CAediting_966408(52629826, +), CAediting_966409(52629834, +), CAediting_966410(52629835, +), CAediting_966411(52629840, +), CAediting_966412(52629848, +), CAediting_966413(52629861, +), CAediting_966414(52629887, +), CAediting_966415(52629902, +), CAediting_966416(52629910, +), CAediting_966417(52629911, +), CAediting_966418(52629912, +), CAediting_966419(52629917, +), CAediting_966420(52629923, +), CAediting_966421(52629926, +), CAediting_966422(52629927, +), CAediting_966423(52629928, +), CAediting_966424(52629929, +), CAediting_966425(52629930, +), CAediting_966426(52629932, +), CAediting_966427(52629935, +), CAediting_966428(52629936, +), CAediting_966429(52629938, +), CAediting_966430(52629941, +), CAediting_966431(52629947, +), CAediting_966432(52629958, +), CAediting_966433(52629973, +), CAediting_966434(52629977, +), CAediting_966435(52629981, +), CAediting_966436(52629994, +), CAediting_966437(52630000, +), CAediting_966438(52630016, +), CAediting_966439(52630033, +), CAediting_966440(52630037, +), CAediting_966441(52630338, +), CAediting_966442(52630351, +), CAediting_966443(52630356, +), CAediting_966444(52630357, +), CAediting_966445(52630401, +), CAediting_966446(52630404, +), CAediting_966447(52630411, +), CAediting_966448(52630414, +), CAediting_966449(52630416, +), CAediting_966450(52630427, +), CAediting_966451(52630436, +), CAediting_966452(52630449, +), CAediting_966453(52630455, +), CAediting_966454(52630458, +), CAediting_966455(52630460, +), CAediting_966456(52630472, +), CAediting_966457(52630475, +), CAediting_966458(52630506, +), CAediting_966459(52630518, +), CAediting_966460(52630531, +), CAediting_966461(52630532, +), CAediting_966462(52630533, +), CAediting_966463(52630545, +), CAediting_966464(52630547, +), CAediting_966465(52630554, +),

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RNA editing positional annotations for MRPS31P4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_966370	chr13_52619085_+	ncRNA_intronic
CAediting_966371	chr13_52619862_+	ncRNA_intronic
CAediting_966372	chr13_52624910_+	ncRNA_intronic
CAediting_966373	chr13_52624920_+	ncRNA_intronic
CAediting_966374	chr13_52624972_+	ncRNA_intronic
CAediting_966375	chr13_52628179_+	ncRNA_intronic
CAediting_966376	chr13_52628215_+	ncRNA_intronic
CAediting_966377	chr13_52628217_+	ncRNA_intronic
CAediting_966378	chr13_52628233_+	ncRNA_intronic
CAediting_966379	chr13_52628236_+	ncRNA_intronic
CAediting_966380	chr13_52628237_+	ncRNA_intronic
CAediting_966381	chr13_52628296_+	ncRNA_intronic
CAediting_966382	chr13_52628322_+	ncRNA_intronic
CAediting_966383	chr13_52628332_+	ncRNA_intronic
CAediting_966384	chr13_52628362_+	ncRNA_intronic
CAediting_966385	chr13_52628363_+	ncRNA_intronic
CAediting_966386	chr13_52628899_+	ncRNA_intronic
CAediting_966387	chr13_52628906_+	ncRNA_intronic
CAediting_966388	chr13_52628932_+	ncRNA_intronic
CAediting_966389	chr13_52628975_+	ncRNA_intronic
CAediting_966390	chr13_52628980_+	ncRNA_intronic
CAediting_966391	chr13_52628993_+	ncRNA_intronic
CAediting_966392	chr13_52629002_+	ncRNA_intronic
CAediting_966393	chr13_52629005_+	ncRNA_intronic
CAediting_966394	chr13_52629015_+	ncRNA_intronic
CAediting_966395	chr13_52629055_+	ncRNA_intronic
CAediting_966396	chr13_52629076_+	ncRNA_intronic
CAediting_966397	chr13_52629110_+	ncRNA_intronic
CAediting_966398	chr13_52629137_+	ncRNA_intronic
CAediting_966399	chr13_52629138_+	ncRNA_intronic
CAediting_966400	chr13_52629139_+	ncRNA_intronic
CAediting_966401	chr13_52629150_+	ncRNA_intronic
CAediting_966402	chr13_52629152_+	ncRNA_intronic
CAediting_966403	chr13_52629159_+	ncRNA_intronic
CAediting_966404	chr13_52629797_+	ncRNA_intronic
CAediting_966405	chr13_52629800_+	ncRNA_intronic
CAediting_966406	chr13_52629801_+	ncRNA_intronic
CAediting_966407	chr13_52629807_+	ncRNA_intronic
CAediting_966408	chr13_52629826_+	ncRNA_intronic
CAediting_966409	chr13_52629834_+	ncRNA_intronic
CAediting_966410	chr13_52629835_+	ncRNA_intronic
CAediting_966411	chr13_52629840_+	ncRNA_intronic
CAediting_966412	chr13_52629848_+	ncRNA_intronic
CAediting_966413	chr13_52629861_+	ncRNA_intronic
CAediting_966414	chr13_52629887_+	ncRNA_intronic
CAediting_966415	chr13_52629902_+	ncRNA_intronic
CAediting_966416	chr13_52629910_+	ncRNA_intronic
CAediting_966417	chr13_52629911_+	ncRNA_intronic
CAediting_966418	chr13_52629912_+	ncRNA_intronic
CAediting_966419	chr13_52629917_+	ncRNA_intronic
CAediting_966420	chr13_52629923_+	ncRNA_intronic
CAediting_966421	chr13_52629926_+	ncRNA_intronic
CAediting_966422	chr13_52629927_+	ncRNA_intronic
CAediting_966423	chr13_52629928_+	ncRNA_intronic
CAediting_966424	chr13_52629929_+	ncRNA_intronic
CAediting_966425	chr13_52629930_+	ncRNA_intronic
CAediting_966426	chr13_52629932_+	ncRNA_intronic
CAediting_966427	chr13_52629935_+	ncRNA_intronic
CAediting_966428	chr13_52629936_+	ncRNA_intronic
CAediting_966429	chr13_52629938_+	ncRNA_intronic
CAediting_966430	chr13_52629941_+	ncRNA_intronic
CAediting_966431	chr13_52629947_+	ncRNA_intronic
CAediting_966432	chr13_52629958_+	ncRNA_intronic
CAediting_966433	chr13_52629973_+	ncRNA_intronic
CAediting_966434	chr13_52629977_+	ncRNA_intronic
CAediting_966435	chr13_52629981_+	ncRNA_intronic
CAediting_966436	chr13_52629994_+	ncRNA_intronic
CAediting_966437	chr13_52630000_+	ncRNA_intronic
CAediting_966438	chr13_52630016_+	ncRNA_intronic
CAediting_966439	chr13_52630033_+	ncRNA_intronic
CAediting_966440	chr13_52630037_+	ncRNA_intronic
CAediting_966441	chr13_52630338_+	ncRNA_intronic
CAediting_966442	chr13_52630351_+	ncRNA_intronic
CAediting_966443	chr13_52630356_+	ncRNA_intronic
CAediting_966444	chr13_52630357_+	ncRNA_intronic
CAediting_966445	chr13_52630401_+	ncRNA_intronic
CAediting_966446	chr13_52630404_+	ncRNA_intronic
CAediting_966447	chr13_52630411_+	ncRNA_intronic
CAediting_966448	chr13_52630414_+	ncRNA_intronic
CAediting_966449	chr13_52630416_+	ncRNA_intronic
CAediting_966450	chr13_52630427_+	ncRNA_intronic
CAediting_966451	chr13_52630436_+	ncRNA_intronic
CAediting_966452	chr13_52630449_+	ncRNA_intronic
CAediting_966453	chr13_52630455_+	ncRNA_intronic
CAediting_966454	chr13_52630458_+	ncRNA_intronic
CAediting_966455	chr13_52630460_+	ncRNA_intronic
CAediting_966456	chr13_52630472_+	ncRNA_intronic
CAediting_966457	chr13_52630475_+	ncRNA_intronic
CAediting_966458	chr13_52630506_+	ncRNA_intronic
CAediting_966459	chr13_52630518_+	ncRNA_intronic
CAediting_966460	chr13_52630531_+	ncRNA_intronic
CAediting_966461	chr13_52630532_+	ncRNA_intronic
CAediting_966462	chr13_52630533_+	ncRNA_intronic
CAediting_966463	chr13_52630545_+	ncRNA_intronic
CAediting_966464	chr13_52630547_+	ncRNA_intronic
CAediting_966465	chr13_52630554_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_966370	chr13_52619085_+	SINE	Alu	AluSp
CAediting_966371	chr13_52619862_+	SINE	Alu	AluY
CAediting_966372	chr13_52624910_+	SINE	Alu	AluSz
CAediting_966373	chr13_52624920_+	SINE	Alu	AluSz
CAediting_966374	chr13_52624972_+	SINE	Alu	AluSz
CAediting_966375	chr13_52628179_+	SINE	Alu	AluJr
CAediting_966376	chr13_52628215_+	SINE	Alu	AluJr
CAediting_966377	chr13_52628217_+	SINE	Alu	AluJr
CAediting_966378	chr13_52628233_+	SINE	Alu	AluJr
CAediting_966379	chr13_52628236_+	SINE	Alu	AluJr
CAediting_966380	chr13_52628237_+	SINE	Alu	AluJr
CAediting_966381	chr13_52628296_+	SINE	Alu	AluJr
CAediting_966382	chr13_52628322_+	SINE	Alu	AluJr
CAediting_966383	chr13_52628332_+	SINE	Alu	AluJr
CAediting_966384	chr13_52628362_+	SINE	Alu	AluJr
CAediting_966385	chr13_52628363_+	SINE	Alu	AluJr
CAediting_966386	chr13_52628899_+	SINE	Alu	AluSq2
CAediting_966387	chr13_52628906_+	SINE	Alu	AluSq2
CAediting_966388	chr13_52628932_+	SINE	Alu	AluSq2
CAediting_966389	chr13_52628975_+	SINE	Alu	AluSq2
CAediting_966390	chr13_52628980_+	SINE	Alu	AluSq2
CAediting_966391	chr13_52628993_+	SINE	Alu	AluSq2
CAediting_966392	chr13_52629002_+	SINE	Alu	AluSq2
CAediting_966393	chr13_52629005_+	SINE	Alu	AluSq2
CAediting_966394	chr13_52629015_+	SINE	Alu	AluSq2
CAediting_966395	chr13_52629055_+	SINE	Alu	AluSq2
CAediting_966396	chr13_52629076_+	SINE	Alu	AluSq2
CAediting_966397	chr13_52629110_+	SINE	Alu	AluSq2
CAediting_966398	chr13_52629137_+	SINE	Alu	AluSq2
CAediting_966399	chr13_52629138_+	SINE	Alu	AluSq2
CAediting_966400	chr13_52629139_+	SINE	Alu	AluSq2
CAediting_966401	chr13_52629150_+	SINE	Alu	AluSq2
CAediting_966402	chr13_52629152_+	SINE	Alu	AluSq2
CAediting_966403	chr13_52629159_+	SINE	Alu	AluSq2
CAediting_966408	chr13_52629826_+	SINE	Alu	AluSg
CAediting_966409	chr13_52629834_+	SINE	Alu	AluSg
CAediting_966410	chr13_52629835_+	SINE	Alu	AluSg
CAediting_966411	chr13_52629840_+	SINE	Alu	AluSg
CAediting_966412	chr13_52629848_+	SINE	Alu	AluSg
CAediting_966413	chr13_52629861_+	SINE	Alu	AluSg
CAediting_966414	chr13_52629887_+	SINE	Alu	AluSg
CAediting_966415	chr13_52629902_+	SINE	Alu	AluSg
CAediting_966416	chr13_52629910_+	SINE	Alu	AluSg
CAediting_966417	chr13_52629911_+	SINE	Alu	AluSg
CAediting_966418	chr13_52629912_+	SINE	Alu	AluSg
CAediting_966419	chr13_52629917_+	SINE	Alu	AluSg
CAediting_966420	chr13_52629923_+	SINE	Alu	AluSg
CAediting_966421	chr13_52629926_+	SINE	Alu	AluSg
CAediting_966422	chr13_52629927_+	SINE	Alu	AluSg
CAediting_966423	chr13_52629928_+	SINE	Alu	AluSg
CAediting_966424	chr13_52629929_+	SINE	Alu	AluSg
CAediting_966425	chr13_52629930_+	SINE	Alu	AluSg
CAediting_966426	chr13_52629932_+	SINE	Alu	AluSg
CAediting_966427	chr13_52629935_+	SINE	Alu	AluSg
CAediting_966428	chr13_52629936_+	SINE	Alu	AluSg
CAediting_966429	chr13_52629938_+	SINE	Alu	AluSg
CAediting_966430	chr13_52629941_+	SINE	Alu	AluSg
CAediting_966431	chr13_52629947_+	SINE	Alu	AluSg
CAediting_966432	chr13_52629958_+	SINE	Alu	AluSg
CAediting_966433	chr13_52629973_+	SINE	Alu	AluSg
CAediting_966434	chr13_52629977_+	SINE	Alu	AluSg
CAediting_966435	chr13_52629981_+	SINE	Alu	AluSg
CAediting_966436	chr13_52629994_+	SINE	Alu	AluSg
CAediting_966437	chr13_52630000_+	SINE	Alu	AluSg
CAediting_966438	chr13_52630016_+	SINE	Alu	AluSg
CAediting_966439	chr13_52630033_+	SINE	Alu	AluSg
CAediting_966440	chr13_52630037_+	SINE	Alu	AluSg
CAediting_966441	chr13_52630338_+	SINE	Alu	AluSz
CAediting_966442	chr13_52630351_+	SINE	Alu	AluSz
CAediting_966443	chr13_52630356_+	SINE	Alu	AluSz
CAediting_966444	chr13_52630357_+	SINE	Alu	AluSz
CAediting_966445	chr13_52630401_+	SINE	Alu	AluSz
CAediting_966446	chr13_52630404_+	SINE	Alu	AluSz
CAediting_966447	chr13_52630411_+	SINE	Alu	AluSz
CAediting_966448	chr13_52630414_+	SINE	Alu	AluSz
CAediting_966449	chr13_52630416_+	SINE	Alu	AluSz
CAediting_966450	chr13_52630427_+	SINE	Alu	AluSz
CAediting_966451	chr13_52630436_+	SINE	Alu	AluSz
CAediting_966452	chr13_52630449_+	SINE	Alu	AluSz
CAediting_966453	chr13_52630455_+	SINE	Alu	AluSz
CAediting_966454	chr13_52630458_+	SINE	Alu	AluSz
CAediting_966455	chr13_52630460_+	SINE	Alu	AluSz
CAediting_966456	chr13_52630472_+	SINE	Alu	AluSz
CAediting_966457	chr13_52630475_+	SINE	Alu	AluSz
CAediting_966458	chr13_52630506_+	SINE	Alu	AluSz
CAediting_966459	chr13_52630518_+	SINE	Alu	AluSz
CAediting_966460	chr13_52630531_+	SINE	Alu	AluSz
CAediting_966461	chr13_52630532_+	SINE	Alu	AluSz
CAediting_966462	chr13_52630533_+	SINE	Alu	AluSz
CAediting_966463	chr13_52630545_+	SINE	Alu	AluSz
CAediting_966464	chr13_52630547_+	SINE	Alu	AluSz
CAediting_966465	chr13_52630554_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for MRPS31P4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000250299.4.MRPS31P4.

Correlation between RNA A-to-I editing and PSI for ENSG00000250299.4.MRPS31P4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MRPS31P4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MRPS31P4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MRPS31P4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MRPS31P4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for MRPS31P4

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
THCA	CAediting_966412	chr13_52629848_+	0.0289150198389999	0.227874848471322	.	.	.	.
LGG	CAediting_966448	chr13_52630414_+	0.0414142122766962	0.139869994093273	.	.	.	.
THCA	CAediting_966448	chr13_52630414_+	0.00123837388844703	0.359223802782557	.	.	.	.
GBM	CAediting_966460	chr13_52630531_+	0.0374185486320353	0.276385916299641	.	.	.	.
LGG	CAediting_966463	chr13_52630545_+	0.00885920486652357	0.285621533229692	.	.	.	.
GBM	CAediting_966463	chr13_52630545_+	1.26187983580967e-05	0.527338759318379	.	.	.	.

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Relation with cancer stages for MRPS31P4

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for MRPS31P4

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
SKCM	CAediting_966412	chr13_52629848_+	0.0112403612830191	0.00306456	0.0135722

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RelatedDrugs for MRPS31P4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MRPS31P4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene