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Editing gene: GPC6 (CAeditome ID:10082)

Gene summary for GPC6

Gene summary

Gene information	Gene symbol	GPC6
	Gene ID	10082
	Gene name	glypican 6
	Synonyms	OMIMD1
	Cytomap	13q31.3-q32.1
	Type of gene	protein-coding
	Description	glypican-6glypican proteoglycan 6
	Modification date	20210518
	UniProtAcc	Q9Y625
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
GPC6	GO:0016477	Glypican-6	21871017

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RNA A-to-I events for GPC6

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000183098.9

RNA A-to-I editing events in Cancer.

CAediting_968651(93246643, +), CAediting_968652(93246651, +), CAediting_968653(93246677, +), CAediting_968654(93246687, +), CAediting_968655(93258684, +), CAediting_968656(93258697, +), CAediting_968657(93258757, +), CAediting_968658(93258907, +), CAediting_968659(93258910, +), CAediting_968660(93258925, +), CAediting_968661(93263413, +), CAediting_968662(93263545, +), CAediting_968663(93264429, +), CAediting_968664(93264433, +), CAediting_968665(93264468, +), CAediting_968666(93264479, +), CAediting_968667(93264489, +), CAediting_968668(93264543, +), CAediting_968669(93264551, +), CAediting_968670(93264565, +), CAediting_968671(93264594, +), CAediting_968672(93264597, +), CAediting_968673(93264601, +), CAediting_968674(93264659, +), CAediting_968675(93264660, +), CAediting_968676(93269722, +), CAediting_968677(93269834, +), CAediting_968678(93270103, +), CAediting_968679(93270119, +), CAediting_968680(93270205, +), CAediting_968681(93293011, +), CAediting_968682(93293055, +), CAediting_968683(93293083, +), CAediting_968684(93293095, +), CAediting_968685(93293108, +), CAediting_968686(93293109, +), CAediting_968687(93293112, +), CAediting_968688(93293122, +), CAediting_968689(93293128, +), CAediting_968690(93293132, +), CAediting_968691(93295033, +), CAediting_968692(93295038, +), CAediting_968693(93295056, +), CAediting_968694(93295062, +), CAediting_968695(93295076, +), CAediting_968696(93295080, +), CAediting_968697(93295092, +), CAediting_968698(93295096, +), CAediting_968699(93295097, +), CAediting_968700(93295124, +), CAediting_968701(93295125, +), CAediting_968702(93295126, +), CAediting_968703(93295138, +), CAediting_968704(93295171, +), CAediting_968705(93295180, +), CAediting_968706(93295184, +), CAediting_968707(93295200, +), CAediting_968708(93295202, +), CAediting_968709(93295205, +), CAediting_968710(93295217, +), CAediting_968711(93295219, +), CAediting_968712(93295235, +), CAediting_968713(93295610, +), CAediting_968714(93295826, +), CAediting_968715(93297497, +), CAediting_968716(93297504, +), CAediting_968717(93297516, +), CAediting_968718(93297550, +), CAediting_968719(93297551, +), CAediting_968720(93297556, +), CAediting_968721(93298535, +), CAediting_968722(93298676, +), CAediting_968723(93300898, +), CAediting_968724(93300904, +), CAediting_968725(93300934, +), CAediting_968726(93300969, +), CAediting_968727(93313744, +), CAediting_968728(93323892, +), CAediting_968729(93324024, +), CAediting_968730(93324025, +), CAediting_968731(93324053, +), CAediting_968732(93333632, +), CAediting_968733(93357720, +), CAediting_968734(93357728, +), CAediting_968735(93358090, +), CAediting_968736(93358144, +), CAediting_968737(93359100, +), CAediting_968738(93359228, +), CAediting_968739(93359240, +), CAediting_968740(93383235, +), CAediting_968741(93389314, +), CAediting_968742(93449964, +), CAediting_968743(93467697, +), CAediting_968744(93553451, +), CAediting_968745(93553468, +), CAediting_968746(93559252, +), CAediting_968747(93559257, +), CAediting_968748(93559258, +), CAediting_968749(93559260, +), CAediting_968750(93559277, +), CAediting_968751(93559278, +), CAediting_968752(93559283, +), CAediting_968753(93559294, +), CAediting_968754(93559295, +), CAediting_968755(93559296, +), CAediting_968756(93559304, +), CAediting_968757(93562309, +), CAediting_968758(93562313, +), CAediting_968759(93562314, +), CAediting_968760(93562333, +), CAediting_968761(93562334, +), CAediting_968762(93562341, +), CAediting_968763(93562363, +), CAediting_968764(93562367, +), CAediting_968765(93562372, +), CAediting_968766(93567508, +), CAediting_968767(93575241, +), CAediting_968768(93581459, +), CAediting_968769(93581483, +), CAediting_968770(93581596, +), CAediting_968771(93581645, +), CAediting_968772(93581649, +), CAediting_968773(93581653, +), CAediting_968774(93581654, +), CAediting_968775(93581656, +), CAediting_968776(93583651, +), CAediting_968777(93583660, +), CAediting_968778(93584758, +), CAediting_968779(93584763, +), CAediting_968780(93584801, +), CAediting_968781(93584814, +), CAediting_968782(93584815, +), CAediting_968783(93584892, +), CAediting_968784(93584904, +), CAediting_968785(93591208, +), CAediting_968786(93591247, +), CAediting_968787(93591252, +), CAediting_968788(93591276, +), CAediting_968789(93591278, +), CAediting_968790(93591284, +), CAediting_968791(93592254, +), CAediting_968792(93592259, +), CAediting_968793(93592264, +), CAediting_968794(93592314, +), CAediting_968795(93592324, +), CAediting_968796(93600752, +), CAediting_968797(93600803, +), CAediting_968798(93600807, +), CAediting_968799(93600829, +), CAediting_968800(93600870, +), CAediting_968801(93600871, +), CAediting_968802(93601237, +), CAediting_968803(93601257, +), CAediting_968804(93601263, +), CAediting_968805(93601264, +), CAediting_968806(93601269, +), CAediting_968807(93601273, +), CAediting_968808(93601346, +), CAediting_968809(93603077, +), CAediting_968810(93603079, +), CAediting_968811(93603122, +), CAediting_968812(93603139, +), CAediting_968813(93603149, +), CAediting_968814(93603155, +), CAediting_968815(93603206, +), CAediting_968816(93603236, +), CAediting_968817(93603243, +), CAediting_968818(93603260, +), CAediting_968819(93603272, +), CAediting_968820(93605721, +), CAediting_968821(93605735, +), CAediting_968822(93605792, +), CAediting_968823(93619476, +), CAediting_968824(93619501, +), CAediting_968825(93619551, +), CAediting_968826(93619552, +), CAediting_968827(93619585, +), CAediting_968828(93619586, +), CAediting_968829(93619689, +), CAediting_968830(93628352, +), CAediting_968831(93628581, +), CAediting_968832(93649396, +), CAediting_968833(93651807, +), CAediting_968834(93662470, +), CAediting_968835(93662473, +), CAediting_968836(93682884, +), CAediting_968837(93682897, +), CAediting_968838(93683811, +), CAediting_968839(93715246, +), CAediting_968840(93728320, +), CAediting_968841(93891608, +), CAediting_968842(93891609, +), CAediting_968843(93891629, +), CAediting_968844(93896050, +), CAediting_968845(93931549, +), CAediting_968846(93931554, +), CAediting_968847(93931617, +), CAediting_968848(93931637, +), CAediting_968849(93931643, +), CAediting_968850(93931644, +), CAediting_968851(93931653, +), CAediting_968852(93931657, +), CAediting_968853(93983515, +), CAediting_968854(93985571, +), CAediting_968855(93985581, +), CAediting_968856(93985585, +), CAediting_968857(93985612, +), CAediting_968858(93985617, +), CAediting_968859(93985631, +), CAediting_968860(93985643, +), CAediting_968861(93985644, +), CAediting_968862(93985667, +), CAediting_968863(93985675, +), CAediting_968864(93985679, +), CAediting_968865(93985680, +), CAediting_968866(94027993, +), CAediting_968867(94049069, +), CAediting_968868(94070321, +), CAediting_968869(94072626, +), CAediting_968870(94083248, +), CAediting_968871(94083258, +), CAediting_968872(94085050, +), CAediting_968873(94085062, +), CAediting_968874(94085068, +), CAediting_968875(94085095, +), CAediting_968876(94085135, +), CAediting_968877(94085136, +), CAediting_968878(94085144, +), CAediting_968879(94085146, +), CAediting_968880(94085175, +), CAediting_968881(94085201, +), CAediting_968882(94085202, +), CAediting_968883(94085207, +), CAediting_968884(94085211, +), CAediting_968885(94085247, +), CAediting_968886(94085277, +), CAediting_968887(94085304, +), CAediting_968888(94107725, +), CAediting_968889(94107737, +), CAediting_968890(94107751, +), CAediting_968891(94107774, +), CAediting_968892(94143631, +), CAediting_968893(94143654, +), CAediting_968894(94143736, +), CAediting_968895(94143770, +), CAediting_968896(94244050, +), CAediting_968897(94244463, +), CAediting_968898(94244471, +), CAediting_968899(94341313, +), CAediting_968900(94341316, +), CAediting_968901(94358163, +), CAediting_968902(94358169, +), CAediting_968903(94358183, +), CAediting_968904(94392265, +), CAediting_968905(94397996, +), CAediting_968906(94398156, +), CAediting_968907(94406281, +), CAediting_968908(94406297, +), CAediting_968909(94406298, +), CAediting_968910(94406313, +), CAediting_968911(94406650, +), CAediting_968912(94406676, +), CAediting_968913(94406732, +), CAediting_968914(94406738, +), CAediting_968915(94406942, +), CAediting_968916(94407016, +),

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RNA editing positional annotations for GPC6 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_968651	chr13_93246643_+	intronic
CAediting_968652	chr13_93246651_+	intronic
CAediting_968653	chr13_93246677_+	intronic
CAediting_968654	chr13_93246687_+	intronic
CAediting_968655	chr13_93258684_+	intronic
CAediting_968656	chr13_93258697_+	intronic
CAediting_968657	chr13_93258757_+	intronic
CAediting_968658	chr13_93258907_+	intronic
CAediting_968659	chr13_93258910_+	intronic
CAediting_968660	chr13_93258925_+	intronic
CAediting_968661	chr13_93263413_+	intronic
CAediting_968662	chr13_93263545_+	intronic
CAediting_968663	chr13_93264429_+	intronic
CAediting_968664	chr13_93264433_+	intronic
CAediting_968665	chr13_93264468_+	intronic
CAediting_968666	chr13_93264479_+	intronic
CAediting_968667	chr13_93264489_+	intronic
CAediting_968668	chr13_93264543_+	intronic
CAediting_968669	chr13_93264551_+	intronic
CAediting_968670	chr13_93264565_+	intronic
CAediting_968671	chr13_93264594_+	intronic
CAediting_968672	chr13_93264597_+	intronic
CAediting_968673	chr13_93264601_+	intronic
CAediting_968674	chr13_93264659_+	intronic
CAediting_968675	chr13_93264660_+	intronic
CAediting_968676	chr13_93269722_+	intronic
CAediting_968677	chr13_93269834_+	intronic
CAediting_968678	chr13_93270103_+	intronic
CAediting_968679	chr13_93270119_+	intronic
CAediting_968680	chr13_93270205_+	intronic
CAediting_968681	chr13_93293011_+	intronic
CAediting_968682	chr13_93293055_+	intronic
CAediting_968683	chr13_93293083_+	intronic
CAediting_968684	chr13_93293095_+	intronic
CAediting_968685	chr13_93293108_+	intronic
CAediting_968686	chr13_93293109_+	intronic
CAediting_968687	chr13_93293112_+	intronic
CAediting_968688	chr13_93293122_+	intronic
CAediting_968689	chr13_93293128_+	intronic
CAediting_968690	chr13_93293132_+	intronic
CAediting_968691	chr13_93295033_+	intronic
CAediting_968692	chr13_93295038_+	intronic
CAediting_968693	chr13_93295056_+	intronic
CAediting_968694	chr13_93295062_+	intronic
CAediting_968695	chr13_93295076_+	intronic
CAediting_968696	chr13_93295080_+	intronic
CAediting_968697	chr13_93295092_+	intronic
CAediting_968698	chr13_93295096_+	intronic
CAediting_968699	chr13_93295097_+	intronic
CAediting_968700	chr13_93295124_+	intronic
CAediting_968701	chr13_93295125_+	intronic
CAediting_968702	chr13_93295126_+	intronic
CAediting_968703	chr13_93295138_+	intronic
CAediting_968704	chr13_93295171_+	intronic
CAediting_968705	chr13_93295180_+	intronic
CAediting_968706	chr13_93295184_+	intronic
CAediting_968707	chr13_93295200_+	intronic
CAediting_968708	chr13_93295202_+	intronic
CAediting_968709	chr13_93295205_+	intronic
CAediting_968710	chr13_93295217_+	intronic
CAediting_968711	chr13_93295219_+	intronic
CAediting_968712	chr13_93295235_+	intronic
CAediting_968713	chr13_93295610_+	intronic
CAediting_968714	chr13_93295826_+	intronic
CAediting_968715	chr13_93297497_+	intronic
CAediting_968716	chr13_93297504_+	intronic
CAediting_968717	chr13_93297516_+	intronic
CAediting_968718	chr13_93297550_+	intronic
CAediting_968719	chr13_93297551_+	intronic
CAediting_968720	chr13_93297556_+	intronic
CAediting_968721	chr13_93298535_+	intronic
CAediting_968722	chr13_93298676_+	intronic
CAediting_968723	chr13_93300898_+	intronic
CAediting_968724	chr13_93300904_+	intronic
CAediting_968725	chr13_93300934_+	intronic
CAediting_968726	chr13_93300969_+	intronic
CAediting_968727	chr13_93313744_+	intronic
CAediting_968728	chr13_93323892_+	intronic
CAediting_968729	chr13_93324024_+	intronic
CAediting_968730	chr13_93324025_+	intronic
CAediting_968731	chr13_93324053_+	intronic
CAediting_968732	chr13_93333632_+	intronic
CAediting_968733	chr13_93357720_+	intronic
CAediting_968734	chr13_93357728_+	intronic
CAediting_968735	chr13_93358090_+	intronic
CAediting_968736	chr13_93358144_+	intronic
CAediting_968737	chr13_93359100_+	intronic
CAediting_968738	chr13_93359228_+	intronic
CAediting_968739	chr13_93359240_+	intronic
CAediting_968740	chr13_93383235_+	intronic
CAediting_968741	chr13_93389314_+	intronic
CAediting_968742	chr13_93449964_+	intronic
CAediting_968743	chr13_93467697_+	intronic
CAediting_968744	chr13_93553451_+	intronic
CAediting_968745	chr13_93553468_+	intronic
CAediting_968746	chr13_93559252_+	intronic
CAediting_968747	chr13_93559257_+	intronic
CAediting_968748	chr13_93559258_+	intronic
CAediting_968749	chr13_93559260_+	intronic
CAediting_968750	chr13_93559277_+	intronic
CAediting_968751	chr13_93559278_+	intronic
CAediting_968752	chr13_93559283_+	intronic
CAediting_968753	chr13_93559294_+	intronic
CAediting_968754	chr13_93559295_+	intronic
CAediting_968755	chr13_93559296_+	intronic
CAediting_968756	chr13_93559304_+	intronic
CAediting_968757	chr13_93562309_+	intronic
CAediting_968758	chr13_93562313_+	intronic
CAediting_968759	chr13_93562314_+	intronic
CAediting_968760	chr13_93562333_+	intronic
CAediting_968761	chr13_93562334_+	intronic
CAediting_968762	chr13_93562341_+	intronic
CAediting_968763	chr13_93562363_+	intronic
CAediting_968764	chr13_93562367_+	intronic
CAediting_968765	chr13_93562372_+	intronic
CAediting_968766	chr13_93567508_+	intronic
CAediting_968767	chr13_93575241_+	intronic
CAediting_968768	chr13_93581459_+	intronic
CAediting_968769	chr13_93581483_+	intronic
CAediting_968770	chr13_93581596_+	intronic
CAediting_968771	chr13_93581645_+	intronic
CAediting_968772	chr13_93581649_+	intronic
CAediting_968773	chr13_93581653_+	intronic
CAediting_968774	chr13_93581654_+	intronic
CAediting_968775	chr13_93581656_+	intronic
CAediting_968776	chr13_93583651_+	intronic
CAediting_968777	chr13_93583660_+	intronic
CAediting_968778	chr13_93584758_+	intronic
CAediting_968779	chr13_93584763_+	intronic
CAediting_968780	chr13_93584801_+	intronic
CAediting_968781	chr13_93584814_+	intronic
CAediting_968782	chr13_93584815_+	intronic
CAediting_968783	chr13_93584892_+	intronic
CAediting_968784	chr13_93584904_+	intronic
CAediting_968785	chr13_93591208_+	intronic
CAediting_968786	chr13_93591247_+	intronic
CAediting_968787	chr13_93591252_+	intronic
CAediting_968788	chr13_93591276_+	intronic
CAediting_968789	chr13_93591278_+	intronic
CAediting_968790	chr13_93591284_+	intronic
CAediting_968791	chr13_93592254_+	intronic
CAediting_968792	chr13_93592259_+	intronic
CAediting_968793	chr13_93592264_+	intronic
CAediting_968794	chr13_93592314_+	intronic
CAediting_968795	chr13_93592324_+	intronic
CAediting_968796	chr13_93600752_+	intronic
CAediting_968797	chr13_93600803_+	intronic
CAediting_968798	chr13_93600807_+	intronic
CAediting_968799	chr13_93600829_+	intronic
CAediting_968800	chr13_93600870_+	intronic
CAediting_968801	chr13_93600871_+	intronic
CAediting_968802	chr13_93601237_+	intronic
CAediting_968803	chr13_93601257_+	intronic
CAediting_968804	chr13_93601263_+	intronic
CAediting_968805	chr13_93601264_+	intronic
CAediting_968806	chr13_93601269_+	intronic
CAediting_968807	chr13_93601273_+	intronic
CAediting_968808	chr13_93601346_+	intronic
CAediting_968809	chr13_93603077_+	intronic
CAediting_968810	chr13_93603079_+	intronic
CAediting_968811	chr13_93603122_+	intronic
CAediting_968812	chr13_93603139_+	intronic
CAediting_968813	chr13_93603149_+	intronic
CAediting_968814	chr13_93603155_+	intronic
CAediting_968815	chr13_93603206_+	intronic
CAediting_968816	chr13_93603236_+	intronic
CAediting_968817	chr13_93603243_+	intronic
CAediting_968818	chr13_93603260_+	intronic
CAediting_968819	chr13_93603272_+	intronic
CAediting_968820	chr13_93605721_+	intronic
CAediting_968821	chr13_93605735_+	intronic
CAediting_968822	chr13_93605792_+	intronic
CAediting_968823	chr13_93619476_+	intronic
CAediting_968824	chr13_93619501_+	intronic
CAediting_968825	chr13_93619551_+	intronic
CAediting_968826	chr13_93619552_+	intronic
CAediting_968827	chr13_93619585_+	intronic
CAediting_968828	chr13_93619586_+	intronic
CAediting_968829	chr13_93619689_+	intronic
CAediting_968830	chr13_93628352_+	intronic
CAediting_968831	chr13_93628581_+	intronic
CAediting_968832	chr13_93649396_+	intronic
CAediting_968833	chr13_93651807_+	intronic
CAediting_968834	chr13_93662470_+	intronic
CAediting_968835	chr13_93662473_+	intronic
CAediting_968836	chr13_93682884_+	intronic
CAediting_968837	chr13_93682897_+	intronic
CAediting_968838	chr13_93683811_+	intronic
CAediting_968839	chr13_93715246_+	intronic
CAediting_968840	chr13_93728320_+	intronic
CAediting_968841	chr13_93891608_+	intronic
CAediting_968842	chr13_93891609_+	intronic
CAediting_968843	chr13_93891629_+	intronic
CAediting_968844	chr13_93896050_+	intronic
CAediting_968845	chr13_93931549_+	intronic
CAediting_968846	chr13_93931554_+	intronic
CAediting_968847	chr13_93931617_+	intronic
CAediting_968848	chr13_93931637_+	intronic
CAediting_968849	chr13_93931643_+	intronic
CAediting_968850	chr13_93931644_+	intronic
CAediting_968851	chr13_93931653_+	intronic
CAediting_968852	chr13_93931657_+	intronic
CAediting_968853	chr13_93983515_+	intronic
CAediting_968854	chr13_93985571_+	intronic
CAediting_968855	chr13_93985581_+	intronic
CAediting_968856	chr13_93985585_+	intronic
CAediting_968857	chr13_93985612_+	intronic
CAediting_968858	chr13_93985617_+	intronic
CAediting_968859	chr13_93985631_+	intronic
CAediting_968860	chr13_93985643_+	intronic
CAediting_968861	chr13_93985644_+	intronic
CAediting_968862	chr13_93985667_+	intronic
CAediting_968863	chr13_93985675_+	intronic
CAediting_968864	chr13_93985679_+	intronic
CAediting_968865	chr13_93985680_+	intronic
CAediting_968866	chr13_94027993_+	intronic
CAediting_968867	chr13_94049069_+	intronic
CAediting_968868	chr13_94070321_+	intronic
CAediting_968869	chr13_94072626_+	intronic
CAediting_968870	chr13_94083248_+	intronic
CAediting_968871	chr13_94083258_+	intronic
CAediting_968872	chr13_94085050_+	intronic
CAediting_968873	chr13_94085062_+	intronic
CAediting_968874	chr13_94085068_+	intronic
CAediting_968875	chr13_94085095_+	intronic
CAediting_968876	chr13_94085135_+	intronic
CAediting_968877	chr13_94085136_+	intronic
CAediting_968878	chr13_94085144_+	intronic
CAediting_968879	chr13_94085146_+	intronic
CAediting_968880	chr13_94085175_+	intronic
CAediting_968881	chr13_94085201_+	intronic
CAediting_968882	chr13_94085202_+	intronic
CAediting_968883	chr13_94085207_+	intronic
CAediting_968884	chr13_94085211_+	intronic
CAediting_968885	chr13_94085247_+	intronic
CAediting_968886	chr13_94085277_+	intronic
CAediting_968887	chr13_94085304_+	intronic
CAediting_968888	chr13_94107725_+	intronic
CAediting_968889	chr13_94107737_+	intronic
CAediting_968890	chr13_94107751_+	intronic
CAediting_968891	chr13_94107774_+	intronic
CAediting_968892	chr13_94143631_+	intronic
CAediting_968893	chr13_94143654_+	intronic
CAediting_968894	chr13_94143736_+	intronic
CAediting_968895	chr13_94143770_+	intronic
CAediting_968896	chr13_94244050_+	intronic
CAediting_968897	chr13_94244463_+	intronic
CAediting_968898	chr13_94244471_+	intronic
CAediting_968899	chr13_94341313_+	intronic
CAediting_968900	chr13_94341316_+	intronic
CAediting_968901	chr13_94358163_+	intronic
CAediting_968902	chr13_94358169_+	intronic
CAediting_968903	chr13_94358183_+	intronic
CAediting_968904	chr13_94392265_+	intronic
CAediting_968905	chr13_94397996_+	intronic
CAediting_968906	chr13_94398156_+	intronic
CAediting_968907	chr13_94406281_+	UTR3
CAediting_968908	chr13_94406297_+	UTR3
CAediting_968909	chr13_94406298_+	UTR3
CAediting_968910	chr13_94406313_+	UTR3
CAediting_968911	chr13_94406650_+	UTR3
CAediting_968912	chr13_94406676_+	UTR3
CAediting_968913	chr13_94406732_+	UTR3
CAediting_968914	chr13_94406738_+	UTR3
CAediting_968915	chr13_94406942_+	UTR3
CAediting_968916	chr13_94407016_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_968651	chr13_93246643_+	SINE	Alu	AluY
CAediting_968652	chr13_93246651_+	SINE	Alu	AluY
CAediting_968653	chr13_93246677_+	SINE	Alu	AluY
CAediting_968654	chr13_93246687_+	SINE	Alu	AluY
CAediting_968655	chr13_93258684_+	SINE	Alu	AluJr
CAediting_968656	chr13_93258697_+	SINE	Alu	AluJr
CAediting_968657	chr13_93258757_+	SINE	Alu	AluJr
CAediting_968658	chr13_93258907_+	SINE	Alu	AluJr
CAediting_968659	chr13_93258910_+	SINE	Alu	AluJr
CAediting_968660	chr13_93258925_+	SINE	Alu	AluJr
CAediting_968661	chr13_93263413_+	SINE	Alu	AluSq2
CAediting_968662	chr13_93263545_+	SINE	Alu	AluSq2
CAediting_968663	chr13_93264429_+	SINE	Alu	AluJr
CAediting_968664	chr13_93264433_+	SINE	Alu	AluJr
CAediting_968665	chr13_93264468_+	SINE	Alu	AluJr
CAediting_968666	chr13_93264479_+	SINE	Alu	AluJr
CAediting_968667	chr13_93264489_+	SINE	Alu	AluJr
CAediting_968668	chr13_93264543_+	SINE	Alu	AluJr
CAediting_968669	chr13_93264551_+	SINE	Alu	AluJr
CAediting_968670	chr13_93264565_+	SINE	Alu	AluJr
CAediting_968671	chr13_93264594_+	SINE	Alu	AluJr
CAediting_968672	chr13_93264597_+	SINE	Alu	AluJr
CAediting_968673	chr13_93264601_+	SINE	Alu	AluJr
CAediting_968674	chr13_93264659_+	SINE	Alu	AluJr
CAediting_968675	chr13_93264660_+	SINE	Alu	AluJr
CAediting_968676	chr13_93269722_+	SINE	Alu	AluYf1
CAediting_968677	chr13_93269834_+	SINE	Alu	AluYf1
CAediting_968678	chr13_93270103_+	SINE	Alu	AluJo
CAediting_968679	chr13_93270119_+	SINE	Alu	AluJo
CAediting_968680	chr13_93270205_+	SINE	Alu	AluJo
CAediting_968681	chr13_93293011_+	SINE	Alu	AluJb
CAediting_968682	chr13_93293055_+	SINE	Alu	AluJb
CAediting_968683	chr13_93293083_+	SINE	Alu	AluJb
CAediting_968684	chr13_93293095_+	SINE	Alu	AluJb
CAediting_968685	chr13_93293108_+	SINE	Alu	AluJb
CAediting_968686	chr13_93293109_+	SINE	Alu	AluJb
CAediting_968687	chr13_93293112_+	SINE	Alu	AluJb
CAediting_968688	chr13_93293122_+	SINE	Alu	AluJb
CAediting_968689	chr13_93293128_+	SINE	Alu	AluJb
CAediting_968690	chr13_93293132_+	SINE	Alu	AluJb
CAediting_968691	chr13_93295033_+	SINE	Alu	AluJb
CAediting_968692	chr13_93295038_+	SINE	Alu	AluJb
CAediting_968693	chr13_93295056_+	SINE	Alu	AluJb
CAediting_968694	chr13_93295062_+	SINE	Alu	AluJb
CAediting_968695	chr13_93295076_+	SINE	Alu	AluJb
CAediting_968696	chr13_93295080_+	SINE	Alu	AluJb
CAediting_968697	chr13_93295092_+	SINE	Alu	AluJb
CAediting_968698	chr13_93295096_+	SINE	Alu	AluJb
CAediting_968699	chr13_93295097_+	SINE	Alu	AluJb
CAediting_968700	chr13_93295124_+	SINE	Alu	AluJb
CAediting_968701	chr13_93295125_+	SINE	Alu	AluJb
CAediting_968702	chr13_93295126_+	SINE	Alu	AluJb
CAediting_968703	chr13_93295138_+	SINE	Alu	AluJb
CAediting_968704	chr13_93295171_+	SINE	Alu	AluJb
CAediting_968705	chr13_93295180_+	SINE	Alu	AluJb
CAediting_968706	chr13_93295184_+	SINE	Alu	AluJb
CAediting_968707	chr13_93295200_+	SINE	Alu	AluJb
CAediting_968708	chr13_93295202_+	SINE	Alu	AluJb
CAediting_968709	chr13_93295205_+	SINE	Alu	AluJb
CAediting_968710	chr13_93295217_+	SINE	Alu	AluJb
CAediting_968711	chr13_93295219_+	SINE	Alu	AluJb
CAediting_968712	chr13_93295235_+	SINE	Alu	AluJb
CAediting_968713	chr13_93295610_+	SINE	Alu	AluYk2
CAediting_968714	chr13_93295826_+	SINE	Alu	AluSz6
CAediting_968715	chr13_93297497_+	SINE	Alu	AluJo
CAediting_968716	chr13_93297504_+	SINE	Alu	AluJo
CAediting_968717	chr13_93297516_+	SINE	Alu	AluJo
CAediting_968718	chr13_93297550_+	SINE	Alu	AluJo
CAediting_968719	chr13_93297551_+	SINE	Alu	AluJo
CAediting_968720	chr13_93297556_+	SINE	Alu	AluJo
CAediting_968721	chr13_93298535_+	SINE	Alu	AluJo
CAediting_968722	chr13_93298676_+	SINE	Alu	AluJo
CAediting_968723	chr13_93300898_+	SINE	Alu	AluSp
CAediting_968724	chr13_93300904_+	SINE	Alu	AluSp
CAediting_968725	chr13_93300934_+	SINE	Alu	AluSp
CAediting_968726	chr13_93300969_+	SINE	Alu	AluSp
CAediting_968727	chr13_93313744_+	SINE	Alu	FAM
CAediting_968728	chr13_93323892_+	LINE	L1	L1MA2
CAediting_968729	chr13_93324024_+	LINE	L1	L1MA2
CAediting_968730	chr13_93324025_+	LINE	L1	L1MA2
CAediting_968731	chr13_93324053_+	LINE	L1	L1MA2
CAediting_968732	chr13_93333632_+	SINE	Alu	AluJb
CAediting_968733	chr13_93357720_+	SINE	Alu	AluJo
CAediting_968734	chr13_93357728_+	SINE	Alu	AluJo
CAediting_968735	chr13_93358090_+	SINE	Alu	AluJr
CAediting_968736	chr13_93358144_+	SINE	Alu	AluJr
CAediting_968737	chr13_93359100_+	SINE	Alu	AluJb
CAediting_968738	chr13_93359228_+	SINE	Alu	AluJb
CAediting_968739	chr13_93359240_+	SINE	Alu	AluJb
CAediting_968740	chr13_93383235_+	SINE	Alu	AluJr
CAediting_968741	chr13_93389314_+	SINE	Alu	AluY
CAediting_968742	chr13_93449964_+	SINE	Alu	AluSc
CAediting_968743	chr13_93467697_+	SINE	Alu	AluJo
CAediting_968744	chr13_93553451_+	SINE	Alu	AluSx3
CAediting_968745	chr13_93553468_+	SINE	Alu	AluSx3
CAediting_968760	chr13_93562333_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968761	chr13_93562334_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968762	chr13_93562341_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968763	chr13_93562363_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968764	chr13_93562367_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968765	chr13_93562372_+	Simple_repeat	Simple_repeat	(ATATAAC)n
CAediting_968766	chr13_93567508_+	SINE	Alu	AluY
CAediting_968767	chr13_93575241_+	SINE	Alu	AluSx
CAediting_968768	chr13_93581459_+	SINE	Alu	AluJb
CAediting_968769	chr13_93581483_+	SINE	Alu	AluJb
CAediting_968770	chr13_93581596_+	SINE	Alu	AluJb
CAediting_968771	chr13_93581645_+	SINE	Alu	AluJb
CAediting_968772	chr13_93581649_+	SINE	Alu	AluJb
CAediting_968773	chr13_93581653_+	SINE	Alu	AluJb
CAediting_968774	chr13_93581654_+	SINE	Alu	AluJb
CAediting_968775	chr13_93581656_+	SINE	Alu	AluJb
CAediting_968776	chr13_93583651_+	SINE	Alu	AluSq
CAediting_968777	chr13_93583660_+	SINE	Alu	AluSq
CAediting_968778	chr13_93584758_+	SINE	Alu	AluJb
CAediting_968779	chr13_93584763_+	SINE	Alu	AluJb
CAediting_968780	chr13_93584801_+	SINE	Alu	AluJb
CAediting_968781	chr13_93584814_+	SINE	Alu	AluJb
CAediting_968782	chr13_93584815_+	SINE	Alu	AluJb
CAediting_968783	chr13_93584892_+	SINE	Alu	AluJb
CAediting_968784	chr13_93584904_+	SINE	Alu	AluJb
CAediting_968785	chr13_93591208_+	SINE	Alu	AluY
CAediting_968786	chr13_93591247_+	SINE	Alu	AluY
CAediting_968787	chr13_93591252_+	SINE	Alu	AluY
CAediting_968788	chr13_93591276_+	SINE	Alu	AluY
CAediting_968789	chr13_93591278_+	SINE	Alu	AluY
CAediting_968790	chr13_93591284_+	SINE	Alu	AluY
CAediting_968791	chr13_93592254_+	SINE	Alu	AluSg
CAediting_968792	chr13_93592259_+	SINE	Alu	AluSg
CAediting_968793	chr13_93592264_+	SINE	Alu	AluSg
CAediting_968794	chr13_93592314_+	SINE	Alu	AluSg
CAediting_968795	chr13_93592324_+	SINE	Alu	AluSg
CAediting_968796	chr13_93600752_+	SINE	Alu	AluSg
CAediting_968797	chr13_93600803_+	SINE	Alu	AluSg
CAediting_968798	chr13_93600807_+	SINE	Alu	AluSg
CAediting_968799	chr13_93600829_+	SINE	Alu	AluSg
CAediting_968800	chr13_93600870_+	SINE	Alu	AluSg
CAediting_968801	chr13_93600871_+	SINE	Alu	AluSg
CAediting_968802	chr13_93601237_+	SINE	Alu	AluSz
CAediting_968803	chr13_93601257_+	SINE	Alu	AluSz
CAediting_968804	chr13_93601263_+	SINE	Alu	AluSz
CAediting_968805	chr13_93601264_+	SINE	Alu	AluSz
CAediting_968806	chr13_93601269_+	SINE	Alu	AluSz
CAediting_968807	chr13_93601273_+	SINE	Alu	AluSz
CAediting_968808	chr13_93601346_+	SINE	Alu	AluSz
CAediting_968809	chr13_93603077_+	SINE	Alu	AluJr
CAediting_968810	chr13_93603079_+	SINE	Alu	AluJr
CAediting_968811	chr13_93603122_+	SINE	Alu	AluJr
CAediting_968812	chr13_93603139_+	SINE	Alu	AluJr
CAediting_968813	chr13_93603149_+	SINE	Alu	AluJr
CAediting_968814	chr13_93603155_+	SINE	Alu	AluJr
CAediting_968815	chr13_93603206_+	SINE	Alu	AluJr
CAediting_968816	chr13_93603236_+	SINE	Alu	AluJr
CAediting_968817	chr13_93603243_+	SINE	Alu	AluJr
CAediting_968818	chr13_93603260_+	SINE	Alu	AluJr
CAediting_968819	chr13_93603272_+	SINE	Alu	AluJr
CAediting_968820	chr13_93605721_+	SINE	Alu	AluSx1
CAediting_968821	chr13_93605735_+	SINE	Alu	AluSx1
CAediting_968822	chr13_93605792_+	SINE	Alu	AluSx1
CAediting_968823	chr13_93619476_+	SINE	Alu	AluJr4
CAediting_968824	chr13_93619501_+	SINE	Alu	AluJr4
CAediting_968825	chr13_93619551_+	SINE	Alu	AluJr4
CAediting_968826	chr13_93619552_+	SINE	Alu	AluJr4
CAediting_968827	chr13_93619585_+	SINE	Alu	AluJr4
CAediting_968828	chr13_93619586_+	SINE	Alu	AluJr4
CAediting_968829	chr13_93619689_+	SINE	Alu	AluJr4
CAediting_968832	chr13_93649396_+	SINE	Alu	AluJo
CAediting_968833	chr13_93651807_+	DNA	hAT-Charlie	MER5B
CAediting_968834	chr13_93662470_+	SINE	Alu	AluSq10
CAediting_968835	chr13_93662473_+	SINE	Alu	AluSq10
CAediting_968836	chr13_93682884_+	SINE	Alu	AluJb
CAediting_968837	chr13_93682897_+	SINE	Alu	AluJb
CAediting_968838	chr13_93683811_+	LTR	ERVL-MaLR	MLT1A0
CAediting_968839	chr13_93715246_+	LINE	L1	L1PA16
CAediting_968840	chr13_93728320_+	SINE	Alu	AluJb
CAediting_968844	chr13_93896050_+	LINE	L1	L1MA4
CAediting_968845	chr13_93931549_+	SINE	Alu	AluSx1
CAediting_968846	chr13_93931554_+	SINE	Alu	AluSx1
CAediting_968847	chr13_93931617_+	SINE	Alu	AluSx1
CAediting_968848	chr13_93931637_+	SINE	Alu	AluSx1
CAediting_968849	chr13_93931643_+	SINE	Alu	AluSx1
CAediting_968850	chr13_93931644_+	SINE	Alu	AluSx1
CAediting_968851	chr13_93931653_+	SINE	Alu	AluSx1
CAediting_968852	chr13_93931657_+	SINE	Alu	AluSx1
CAediting_968853	chr13_93983515_+	SINE	Alu	FRAM
CAediting_968854	chr13_93985571_+	SINE	Alu	AluJr
CAediting_968855	chr13_93985581_+	SINE	Alu	AluJr
CAediting_968856	chr13_93985585_+	SINE	Alu	AluJr
CAediting_968857	chr13_93985612_+	SINE	Alu	AluJr
CAediting_968858	chr13_93985617_+	SINE	Alu	AluJr
CAediting_968859	chr13_93985631_+	SINE	Alu	AluJr
CAediting_968860	chr13_93985643_+	SINE	Alu	AluJr
CAediting_968861	chr13_93985644_+	SINE	Alu	AluJr
CAediting_968862	chr13_93985667_+	SINE	Alu	AluJr
CAediting_968863	chr13_93985675_+	SINE	Alu	AluJr
CAediting_968864	chr13_93985679_+	SINE	Alu	AluJr
CAediting_968865	chr13_93985680_+	SINE	Alu	AluJr
CAediting_968866	chr13_94027993_+	SINE	Alu	AluJo
CAediting_968867	chr13_94049069_+	SINE	Alu	AluJr
CAediting_968868	chr13_94070321_+	LTR	ERVL-MaLR	THE1B
CAediting_968869	chr13_94072626_+	SINE	Alu	AluSc
CAediting_968870	chr13_94083248_+	SINE	Alu	AluY
CAediting_968871	chr13_94083258_+	SINE	Alu	AluY
CAediting_968872	chr13_94085050_+	SINE	Alu	AluSg
CAediting_968873	chr13_94085062_+	SINE	Alu	AluSg
CAediting_968874	chr13_94085068_+	SINE	Alu	AluSg
CAediting_968875	chr13_94085095_+	SINE	Alu	AluSg
CAediting_968876	chr13_94085135_+	SINE	Alu	AluSg
CAediting_968877	chr13_94085136_+	SINE	Alu	AluSg
CAediting_968878	chr13_94085144_+	SINE	Alu	AluSg
CAediting_968879	chr13_94085146_+	SINE	Alu	AluSg
CAediting_968880	chr13_94085175_+	SINE	Alu	AluSg
CAediting_968881	chr13_94085201_+	SINE	Alu	AluSg
CAediting_968882	chr13_94085202_+	SINE	Alu	AluSg
CAediting_968883	chr13_94085207_+	SINE	Alu	AluSg
CAediting_968884	chr13_94085211_+	SINE	Alu	AluSg
CAediting_968885	chr13_94085247_+	SINE	Alu	AluSg
CAediting_968886	chr13_94085277_+	SINE	Alu	AluSg
CAediting_968887	chr13_94085304_+	SINE	Alu	AluSg
CAediting_968888	chr13_94107725_+	LINE	L1	L1PB1
CAediting_968889	chr13_94107737_+	LINE	L1	L1PB1
CAediting_968890	chr13_94107751_+	LINE	L1	L1PB1
CAediting_968891	chr13_94107774_+	LINE	L1	L1PB1
CAediting_968892	chr13_94143631_+	SINE	Alu	AluJb
CAediting_968893	chr13_94143654_+	SINE	Alu	AluJb
CAediting_968894	chr13_94143736_+	SINE	Alu	AluJb
CAediting_968895	chr13_94143770_+	SINE	Alu	AluJb
CAediting_968899	chr13_94341313_+	SINE	Alu	AluSq
CAediting_968900	chr13_94341316_+	SINE	Alu	AluSq
CAediting_968901	chr13_94358163_+	SINE	Alu	AluSx
CAediting_968902	chr13_94358169_+	SINE	Alu	AluSx
CAediting_968903	chr13_94358183_+	SINE	Alu	AluSx
CAediting_968905	chr13_94397996_+	LTR	ERVL-MaLR	THE1C
CAediting_968906	chr13_94398156_+	LTR	ERVL-MaLR	THE1C

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RNA A-to-I editing events in the alternative splicing sites for GPC6

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000183098.9.GPC6.

Correlation between RNA A-to-I editing and PSI for ENSG00000183098.9.GPC6.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GPC6

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for GPC6

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for GPC6

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GPC6

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for GPC6

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_968907	chr13_94406281_+	0.042849543275586	0.239376388717859	.	.	.	.
LGG	CAediting_968907	chr13_94406281_+	5.57498711711316e-07	0.598386241083173	.	.	.	.
LIHC	CAediting_968907	chr13_94406281_+	6.87514252101945e-06	0.338221977403924	.	.	.	.
PRAD	CAediting_968907	chr13_94406281_+	0.00302756331481282	0.335733945853187	.	.	.	.
SARC	CAediting_968907	chr13_94406281_+	1.50842618918702e-09	0.581444696580535	.	.	.	.
LGG	CAediting_968909	chr13_94406298_+	0.00435093364851927	0.266347378608806	.	.	.	.
LIHC	CAediting_968914	chr13_94406738_+	1.71959668658328e-05	0.440827618786951	.	.	.	.
LGG	CAediting_968916	chr13_94407016_+	0.000191154224228353	0.391788540078803	.	.	.	.

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Relation with cancer stages for GPC6

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_968907	chr13_94406281_+	0.0159372979939594	-0.283177476282656
BRCA	pathologic_stage	CAediting_968914	chr13_94406738_+	0.0246547290009286	0.208566323739821

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Relation with survival for GPC6

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for GPC6

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GPC6

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
GPC6	C0001787	Osteoporosis, Age-Related	1	CTD_human
GPC6	C0029456	Osteoporosis	1	CTD_human
GPC6	C0029459	Osteoporosis, Senile	1	CTD_human
GPC6	C0206762	Limb Deformities, Congenital	1	CTD_human
GPC6	C0376634	Craniofacial Abnormalities	1	CTD_human
GPC6	C0751406	Post-Traumatic Osteoporosis	1	CTD_human
GPC6	C1850318	Omodysplasia type 1	1	CTD_human;GENOMICS_ENGLAND;ORPHANET
GPC6	C2936816	Micromelic dysplasia, congenital, with dislocation of radius	1	ORPHANET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene