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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: MIR4477B (CAeditome ID:100616194) |
Gene summary for MIR4477B |
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Gene information | Gene symbol | MIR4477B | Gene ID | 100616194 |
Gene name | microRNA 4477b | |
Synonyms | - | |
Cytomap | 9q13 | |
Type of gene | ncRNA | |
Description | hsa-mir-4477b | |
Modification date | 20210518 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for MIR4477B |
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CAediting_688076(63819587, +), CAediting_688077(63819593, +), CAediting_688078(63819595, +), CAediting_688079(63819606, +), CAediting_688080(63819626, +), CAediting_688081(63819627, +), |
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RNA editing positional annotations for MIR4477B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_688076 | chr9_63819587_+ | ncRNA_exonic |
CAediting_688077 | chr9_63819593_+ | ncRNA_exonic |
CAediting_688078 | chr9_63819595_+ | ncRNA_exonic |
CAediting_688079 | chr9_63819606_+ | ncRNA_exonic |
CAediting_688080 | chr9_63819626_+ | ncRNA_exonic |
CAediting_688081 | chr9_63819627_+ | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_688076 | chr9_63819587_+ | DNA | TcMar-Tigger | Tigger1 |
CAediting_688077 | chr9_63819593_+ | DNA | TcMar-Tigger | Tigger1 |
CAediting_688078 | chr9_63819595_+ | DNA | TcMar-Tigger | Tigger1 |
CAediting_688079 | chr9_63819606_+ | DNA | TcMar-Tigger | Tigger1 |
CAediting_688080 | chr9_63819626_+ | DNA | TcMar-Tigger | Tigger1 |
CAediting_688081 | chr9_63819627_+ | DNA | TcMar-Tigger | Tigger1 |
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RNA A-to-I editing events in the alternative splicing sites for MIR4477B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MIR4477B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for MIR4477B |
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The effects of the RNA editing to the miRNA binding sites for MIR4477B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for MIR4477B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for MIR4477B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_688080 | chr9_63819626_+ | 4.26041188464006e-08 | 0.50817854537765 | . | . | . | . |
BRCA | CAediting_688081 | chr9_63819627_+ | 0.000109271433585952 | 0.36531061073961 | . | . | . | . |
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Relation with cancer stages for MIR4477B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_688081 | chr9_63819627_+ | 0.00938461362853504 | 0.252413632739301 |
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Relation with survival for MIR4477B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for MIR4477B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MIR4477B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |