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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: APOC4-APOC2 (CAeditome ID:100533990) |
Gene summary for APOC4-APOC2 |
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Gene information | Gene symbol | APOC4-APOC2 | Gene ID | 100533990 |
Gene name | APOC4-APOC2 readthrough (NMD candidate) | |
Synonyms | APOC4|Apo-CIV|ApoC-IV | |
Cytomap | 19q13.32 | |
Type of gene | ncRNA | |
Description | Apolipoprotein C-IVApolipoprotein C4 | |
Modification date | 20210518 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for APOC4-APOC2 |
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CAediting_1361864(44944301, +), CAediting_1361865(44944314, +), CAediting_1361866(44944447, +), CAediting_1361867(44944469, +), CAediting_1361868(44945347, +), CAediting_1361869(44945361, +), CAediting_1361870(44945393, +), CAediting_1361871(44946281, +), CAediting_1361872(44946301, +), CAediting_1361873(44946319, +), CAediting_1361874(44946567, +), CAediting_1361875(44946688, +), CAediting_1361876(44946702, +), CAediting_1361877(44946724, +), CAediting_1361878(44946932, +), CAediting_1361879(44947041, +), CAediting_1361880(44947815, +), CAediting_1361881(44947836, +), CAediting_1361882(44947837, +), CAediting_1361883(44948115, +), CAediting_1361884(44948157, +), |
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RNA editing positional annotations for APOC4-APOC2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1361864 | chr19_44944301_+ | intronic |
CAediting_1361865 | chr19_44944314_+ | intronic |
CAediting_1361866 | chr19_44944447_+ | intronic |
CAediting_1361867 | chr19_44944469_+ | intronic |
CAediting_1361868 | chr19_44945347_+ | UTR3 |
CAediting_1361869 | chr19_44945361_+ | UTR3 |
CAediting_1361870 | chr19_44945393_+ | UTR3 |
CAediting_1361871 | chr19_44946281_+ | intronic |
CAediting_1361872 | chr19_44946301_+ | intronic |
CAediting_1361873 | chr19_44946319_+ | intronic |
CAediting_1361874 | chr19_44946567_+ | intronic |
CAediting_1361875 | chr19_44946688_+ | intronic |
CAediting_1361876 | chr19_44946702_+ | intronic |
CAediting_1361877 | chr19_44946724_+ | intronic |
CAediting_1361878 | chr19_44946932_+ | intronic |
CAediting_1361879 | chr19_44947041_+ | intronic |
CAediting_1361880 | chr19_44947815_+ | intronic |
CAediting_1361881 | chr19_44947836_+ | intronic |
CAediting_1361882 | chr19_44947837_+ | intronic |
CAediting_1361883 | chr19_44948115_+ | intronic |
CAediting_1361884 | chr19_44948157_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1361864 | chr19_44944301_+ | SINE | Alu | AluSx1 |
CAediting_1361865 | chr19_44944314_+ | SINE | Alu | AluSx1 |
CAediting_1361866 | chr19_44944447_+ | SINE | Alu | AluSx1 |
CAediting_1361867 | chr19_44944469_+ | SINE | Alu | AluSx1 |
CAediting_1361868 | chr19_44945347_+ | SINE | Alu | FLAM_A |
CAediting_1361869 | chr19_44945361_+ | SINE | Alu | FLAM_A |
CAediting_1361870 | chr19_44945393_+ | SINE | Alu | FLAM_A |
CAediting_1361871 | chr19_44946281_+ | SINE | Alu | FLAM_A |
CAediting_1361872 | chr19_44946301_+ | SINE | Alu | FLAM_A |
CAediting_1361873 | chr19_44946319_+ | SINE | Alu | FLAM_A |
CAediting_1361874 | chr19_44946567_+ | SINE | Alu | AluSz |
CAediting_1361875 | chr19_44946688_+ | SINE | Alu | AluSz |
CAediting_1361876 | chr19_44946702_+ | SINE | Alu | AluSz |
CAediting_1361877 | chr19_44946724_+ | SINE | Alu | AluSz |
CAediting_1361878 | chr19_44946932_+ | SINE | Alu | AluSz |
CAediting_1361879 | chr19_44947041_+ | SINE | Alu | AluSz |
CAediting_1361880 | chr19_44947815_+ | SINE | Alu | AluSx3 |
CAediting_1361881 | chr19_44947836_+ | SINE | Alu | AluSx3 |
CAediting_1361882 | chr19_44947837_+ | SINE | Alu | AluSx3 |
CAediting_1361883 | chr19_44948115_+ | SINE | Alu | AluSx1 |
CAediting_1361884 | chr19_44948157_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for APOC4-APOC2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for APOC4-APOC2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for APOC4-APOC2 |
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The effects of the RNA editing to the miRNA binding sites for APOC4-APOC2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1361870 | chr19_44945393_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-10400-3p | 44945386 | 44945392 | 7mer-m8 | 44945372 | 44945393 | 140 | -20.79 |
CAediting_1361869 | chr19_44945361_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-1200 | 44945357 | 44945363 | 7mer-m8 | 44945343 | 44945364 | 141 | -18.61 |
CAediting_1361870 | chr19_44945393_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-1343-3p | 44945389 | 44945395 | 7mer-m8 | 44945376 | 44945396 | 146 | -22.44 |
CAediting_1361870 | chr19_44945393_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-4674 | 44945386 | 44945392 | 7mer-m8 | 44945373 | 44945393 | 150 | -25.78 |
CAediting_1361870 | chr19_44945393_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-6783-3p | 44945389 | 44945395 | 7mer-m8 | 44945375 | 44945396 | 151 | -22.88 |
CAediting_1361869 | chr19_44945361_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-6869-5p | 44945354 | 44945360 | 7mer-m8 | 44945337 | 44945361 | 153 | -23.25 |
CAediting_1361868 | chr19_44945347_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-7151-3p | 44945340 | 44945346 | 7mer-m8 | 44945327 | 44945347 | 140 | -16.19 |
CAediting_1361870 | chr19_44945393_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-939-3p | 44945388 | 44945395 | 8mer-1a | 44945375 | 44945395 | 143 | -18.97 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000224916.7 | ENST00000585685 | hsa-miR-1304-3p | 44945419 | 44945426 | 8mer-1a | 44945403 | 44945426 | 147 | -21.25 |
CAediting_442554 | chr5_154685830_+ | ENSG00000224916.7 | ENST00000585685 | hsa-miR-1303 | 44945469 | 44945475 | 7mer-m8 | 44945453 | 44945476 | 144 | -13.02 |
CAediting_1368054 | chr19_46709310_- | ENSG00000224916.7 | ENST00000585685 | hsa-miR-320e | 44948496 | 44948502 | 7mer-m8 | 44948486 | 44948503 | 154 | -23.94 |
CAediting_604450 | chr7_133034877_- | ENSG00000224916.7 | ENST00000585685 | hsa-miR-3654 | 44949460 | 44949466 | 7mer-m8 | 44949449 | 44949467 | 144 | -20.53 |
CAediting_468389 | chr6_31355314_- | ENSG00000224916.7 | ENST00000585685 | hsa-miR-6891-5p | 44949345 | 44949351 | 7mer-m8 | 44949333 | 44949352 | 151 | -28.18 |
CAediting_468389 | chr6_31355314_- | ENSG00000224916.7 | ENST00000589057 | hsa-miR-6891-5p | 44949345 | 44949351 | 7mer-m8 | 44949333 | 44949352 | 151 | -28.18 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for APOC4-APOC2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for APOC4-APOC2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for APOC4-APOC2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for APOC4-APOC2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for APOC4-APOC2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for APOC4-APOC2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |