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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RTEL1-TNFRSF6B (CAeditome ID:100533107) |
Gene summary for RTEL1-TNFRSF6B |
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Gene information | Gene symbol | RTEL1-TNFRSF6B | Gene ID | 100533107 |
Gene name | RTEL1-TNFRSF6B readthrough (NMD candidate) | |
Synonyms | - | |
Cytomap | 20q13.33 | |
Type of gene | ncRNA | |
Description | RTEL1-TNFRSF6B readthrough (non-protein coding) | |
Modification date | 20210518 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for RTEL1-TNFRSF6B |
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CAediting_1442650(63669003, +), CAediting_1442651(63669122, +), CAediting_1442652(63670712, +), CAediting_1442653(63670729, +), CAediting_1442654(63670742, +), CAediting_1442655(63670749, +), CAediting_1442656(63670750, +), CAediting_1442657(63670830, +), CAediting_1442658(63671339, +), CAediting_1442659(63674470, +), CAediting_1442660(63674475, +), CAediting_1442661(63674509, +), CAediting_1442662(63674554, +), CAediting_1442663(63674558, +), CAediting_1442664(63674603, +), CAediting_1442665(63674604, +), CAediting_1442666(63674621, +), CAediting_1442667(63674633, +), CAediting_1442668(63674655, +), CAediting_1442669(63675537, +), CAediting_1442670(63675545, +), CAediting_1442671(63675575, +), CAediting_1442672(63675577, +), CAediting_1442673(63675631, +), CAediting_1442674(63676088, +), CAediting_1442675(63676100, +), CAediting_1442676(63676119, +), CAediting_1442677(63676133, +), CAediting_1442678(63676136, +), CAediting_1442679(63676184, +), CAediting_1442680(63676185, +), CAediting_1442681(63677339, +), CAediting_1442682(63677360, +), CAediting_1442683(63677381, +), CAediting_1442684(63677453, +), CAediting_1442685(63677456, +), CAediting_1442686(63677457, +), CAediting_1442687(63677468, +), CAediting_1442688(63677488, +), CAediting_1442689(63677494, +), CAediting_1442690(63677504, +), CAediting_1442691(63677534, +), CAediting_1442692(63695848, +), CAediting_1442693(63695858, +), |
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RNA editing positional annotations for RTEL1-TNFRSF6B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1442692 | chr20_63695848_+ | nonsynonymous SNV | ENST00000482936.4 | c.A3893G | p.E1298G | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_1442650 | chr20_63669003_+ | ncRNA_intronic |
CAediting_1442651 | chr20_63669122_+ | ncRNA_intronic |
CAediting_1442652 | chr20_63670712_+ | ncRNA_intronic |
CAediting_1442653 | chr20_63670729_+ | ncRNA_intronic |
CAediting_1442654 | chr20_63670742_+ | ncRNA_intronic |
CAediting_1442655 | chr20_63670749_+ | ncRNA_intronic |
CAediting_1442656 | chr20_63670750_+ | ncRNA_intronic |
CAediting_1442657 | chr20_63670830_+ | ncRNA_intronic |
CAediting_1442658 | chr20_63671339_+ | ncRNA_intronic |
CAediting_1442659 | chr20_63674470_+ | intronic |
CAediting_1442660 | chr20_63674475_+ | intronic |
CAediting_1442661 | chr20_63674509_+ | intronic |
CAediting_1442662 | chr20_63674554_+ | intronic |
CAediting_1442663 | chr20_63674558_+ | intronic |
CAediting_1442664 | chr20_63674603_+ | intronic |
CAediting_1442665 | chr20_63674604_+ | intronic |
CAediting_1442666 | chr20_63674621_+ | intronic |
CAediting_1442667 | chr20_63674633_+ | intronic |
CAediting_1442668 | chr20_63674655_+ | intronic |
CAediting_1442669 | chr20_63675537_+ | intronic |
CAediting_1442670 | chr20_63675545_+ | intronic |
CAediting_1442671 | chr20_63675575_+ | intronic |
CAediting_1442672 | chr20_63675577_+ | intronic |
CAediting_1442673 | chr20_63675631_+ | intronic |
CAediting_1442674 | chr20_63676088_+ | intronic |
CAediting_1442675 | chr20_63676100_+ | intronic |
CAediting_1442676 | chr20_63676119_+ | intronic |
CAediting_1442677 | chr20_63676133_+ | intronic |
CAediting_1442678 | chr20_63676136_+ | intronic |
CAediting_1442679 | chr20_63676184_+ | intronic |
CAediting_1442680 | chr20_63676185_+ | intronic |
CAediting_1442681 | chr20_63677339_+ | intronic |
CAediting_1442682 | chr20_63677360_+ | intronic |
CAediting_1442683 | chr20_63677381_+ | intronic |
CAediting_1442684 | chr20_63677453_+ | intronic |
CAediting_1442685 | chr20_63677456_+ | intronic |
CAediting_1442686 | chr20_63677457_+ | intronic |
CAediting_1442687 | chr20_63677468_+ | intronic |
CAediting_1442688 | chr20_63677488_+ | intronic |
CAediting_1442689 | chr20_63677494_+ | intronic |
CAediting_1442690 | chr20_63677504_+ | intronic |
CAediting_1442691 | chr20_63677534_+ | intronic |
CAediting_1442692 | chr20_63695848_+ | exonic |
CAediting_1442693 | chr20_63695858_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1442650 | chr20_63669003_+ | SINE | Alu | AluSx |
CAediting_1442651 | chr20_63669122_+ | SINE | Alu | AluSx |
CAediting_1442652 | chr20_63670712_+ | SINE | Alu | FLAM_C |
CAediting_1442653 | chr20_63670729_+ | SINE | Alu | FLAM_C |
CAediting_1442654 | chr20_63670742_+ | SINE | Alu | FLAM_C |
CAediting_1442655 | chr20_63670749_+ | SINE | Alu | FLAM_C |
CAediting_1442656 | chr20_63670750_+ | SINE | Alu | FLAM_C |
CAediting_1442657 | chr20_63670830_+ | SINE | Alu | FLAM_C |
CAediting_1442658 | chr20_63671339_+ | SINE | Alu | AluSg |
CAediting_1442659 | chr20_63674470_+ | SINE | Alu | AluJb |
CAediting_1442660 | chr20_63674475_+ | SINE | Alu | AluJb |
CAediting_1442661 | chr20_63674509_+ | SINE | Alu | AluJb |
CAediting_1442662 | chr20_63674554_+ | SINE | Alu | AluJb |
CAediting_1442663 | chr20_63674558_+ | SINE | Alu | AluJb |
CAediting_1442664 | chr20_63674603_+ | SINE | Alu | AluJb |
CAediting_1442665 | chr20_63674604_+ | SINE | Alu | AluJb |
CAediting_1442666 | chr20_63674621_+ | SINE | Alu | AluJb |
CAediting_1442667 | chr20_63674633_+ | SINE | Alu | AluJb |
CAediting_1442668 | chr20_63674655_+ | SINE | Alu | AluJb |
CAediting_1442669 | chr20_63675537_+ | SINE | Alu | AluJr |
CAediting_1442670 | chr20_63675545_+ | SINE | Alu | AluJr |
CAediting_1442671 | chr20_63675575_+ | SINE | Alu | AluJr |
CAediting_1442672 | chr20_63675577_+ | SINE | Alu | AluJr |
CAediting_1442673 | chr20_63675631_+ | SINE | Alu | AluJr |
CAediting_1442674 | chr20_63676088_+ | SINE | Alu | AluJb |
CAediting_1442675 | chr20_63676100_+ | SINE | Alu | AluJb |
CAediting_1442676 | chr20_63676119_+ | SINE | Alu | AluJb |
CAediting_1442677 | chr20_63676133_+ | SINE | Alu | AluJb |
CAediting_1442678 | chr20_63676136_+ | SINE | Alu | AluJb |
CAediting_1442679 | chr20_63676184_+ | SINE | Alu | AluJb |
CAediting_1442680 | chr20_63676185_+ | SINE | Alu | AluJb |
CAediting_1442681 | chr20_63677339_+ | SINE | Alu | AluSx |
CAediting_1442682 | chr20_63677360_+ | SINE | Alu | AluSx |
CAediting_1442683 | chr20_63677381_+ | SINE | Alu | AluSx |
CAediting_1442684 | chr20_63677453_+ | SINE | Alu | AluSx |
CAediting_1442685 | chr20_63677456_+ | SINE | Alu | AluSx |
CAediting_1442686 | chr20_63677457_+ | SINE | Alu | AluSx |
CAediting_1442687 | chr20_63677468_+ | SINE | Alu | AluSx |
CAediting_1442688 | chr20_63677488_+ | SINE | Alu | AluSx |
CAediting_1442689 | chr20_63677494_+ | SINE | Alu | AluSx |
CAediting_1442690 | chr20_63677504_+ | SINE | Alu | AluSx |
CAediting_1442691 | chr20_63677534_+ | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for RTEL1-TNFRSF6B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RTEL1-TNFRSF6B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RTEL1-TNFRSF6B |
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The effects of the RNA editing to the miRNA binding sites for RTEL1-TNFRSF6B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1442692 | chr20_63695848_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-6775-3p | 63695844 | 63695850 | 7mer-m8 | 63695831 | 63695851 | 147.00 | -20.33 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1442692 | chr20_63695848_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-4283 | 63695846 | 63695853 | 8mer-1a | 63695836 | 63695853 | 145 | -21.24 |
CAediting_1442692 | chr20_63695848_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-4283 | 63695846 | 63695853 | 8mer-1a | 63695836 | 63695853 | 145 | -21.24 |
CAediting_1442692 | chr20_63695848_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-760 | 63695844 | 63695850 | 7mer-m8 | 63695833 | 63695851 | 148 | -20.49 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-624-3p | 63691756 | 63691762 | 7mer-m8 | 63691743 | 63691763 | 140 | -11.97 |
CAediting_393 | chr1_1167164_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-200b-3p | 63693236 | 63693242 | 7mer-m8 | 63693221 | 63693243 | 143 | -14 |
CAediting_980496 | chr14_31014685_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-624-3p | 63697473 | 63697479 | 7mer-m8 | 63697458 | 63697480 | 146 | -18.32 |
CAediting_1054808 | chr15_66496985_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-4512 | 63694454 | 63694461 | 8mer-1a | 63694439 | 63694461 | 153 | -20.47 |
CAediting_77128 | chr1_85133844_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-4423-3p | 63694775 | 63694781 | 7mer-m8 | 63694760 | 63694782 | 142 | -14.99 |
CAediting_1399425 | chr20_1392958_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-6869-5p | 63695198 | 63695203 | 6mer | 63695183 | 63695204 | 140 | -27.07 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-548aa | 63697135 | 63697141 | 7mer-m8 | 63697118 | 63697142 | 140 | -12.66 |
CAediting_1368054 | chr19_46709310_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-320e | 63697385 | 63697390 | 6mer | 63697379 | 63697397 | 147 | -20.06 |
CAediting_1368054 | chr19_46709310_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-320e | 63697390 | 63697397 | 8mer-1a | 63697379 | 63697397 | 147 | -20.06 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000026036.19 | ENST00000492259 | hsa-miR-548aa | 63698315 | 63698321 | 7mer-m8 | 63698298 | 63698322 | 155 | -14.46 |
CAediting_1524209 | chrX_134546392_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-503-5p | 63697025 | 63697031 | 7mer-m8 | 63697010 | 63697032 | 140 | -21.6 |
CAediting_1524209 | chrX_134546392_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-503-5p | 63697106 | 63697112 | 7mer-m8 | 63697088 | 63697113 | 159 | -22.55 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000026036.19 | ENST00000492259 | hsa-miR-4512 | 63692901 | 63692907 | 7mer-m8 | 63692887 | 63692908 | 143 | -17.39 |
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The effects of the RNA editing to the stability of the RNA structures for RTEL1-TNFRSF6B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RTEL1-TNFRSF6B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RTEL1-TNFRSF6B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RTEL1-TNFRSF6B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RTEL1-TNFRSF6B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RTEL1-TNFRSF6B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |