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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TMEM256-PLSCR3 (CAeditome ID:100529211) |
Gene summary for TMEM256-PLSCR3 |
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Gene information | Gene symbol | TMEM256-PLSCR3 | Gene ID | 100529211 |
Gene name | TMEM256-PLSCR3 readthrough (NMD candidate) | |
Synonyms | C17orf61-PLSCR3|PLSCR3 | |
Cytomap | 17p13.1 | |
Type of gene | ncRNA | |
Description | Ca(2+)-dependent phospholipid scramblase 3PL scramblase 3Phospholipid scramblase 3 | |
Modification date | 20210518 | |
UniProtAcc | Q9NRY6 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for TMEM256-PLSCR3 |
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CAediting_1160405(7389863, -), |
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RNA editing positional annotations for TMEM256-PLSCR3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1160405 | chr17_7389863_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for TMEM256-PLSCR3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMEM256-PLSCR3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TMEM256-PLSCR3 |
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The effects of the RNA editing to the miRNA binding sites for TMEM256-PLSCR3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-194-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389884 | 144.00 | -20.05 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-874-5p | 7389858 | 7389864 | 7mer-m8 | 7389857 | 7389878 | 147.00 | -21.07 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-194-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389884 | 144.00 | -20.05 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-874-5p | 7389858 | 7389864 | 7mer-m8 | 7389857 | 7389878 | 147.00 | -21.07 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-194-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389884 | 144.00 | -20.05 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-874-5p | 7389858 | 7389864 | 7mer-m8 | 7389857 | 7389878 | 147.00 | -21.07 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-194-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389884 | 144.00 | -20.05 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-874-5p | 7389858 | 7389864 | 7mer-m8 | 7389857 | 7389878 | 147.00 | -21.07 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-194-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389884 | 144.00 | -20.05 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-874-5p | 7389858 | 7389864 | 7mer-m8 | 7389857 | 7389878 | 147.00 | -21.07 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-4727-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389888 | 152 | -20.66 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-4727-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389888 | 152 | -20.66 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-4727-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389888 | 152 | -20.66 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-4727-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389888 | 152 | -20.66 |
CAediting_1160405 | chr17_7389863_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-4727-3p | 7389863 | 7389869 | 7mer-m8 | 7389862 | 7389888 | 152 | -20.66 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_1054808 | chr15_66496985_- | ENSG00000187838.15 | ENST00000575434 | hsa-miR-4512 | 7390261 | 7390267 | 7mer-1a | 7390261 | 7390283 | 143 | -27.48 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
CAediting_1524209 | chrX_134546392_- | ENSG00000187838.15 | ENST00000324822 | hsa-miR-503-5p | 7389975 | 7389981 | 7mer-m8 | 7389974 | 7389996 | 145 | -18.43 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
CAediting_1524209 | chrX_134546392_- | ENSG00000187838.15 | ENST00000573070 | hsa-miR-503-5p | 7389975 | 7389981 | 7mer-m8 | 7389974 | 7389996 | 145 | -18.43 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
CAediting_1524209 | chrX_134546392_- | ENSG00000187838.15 | ENST00000576201 | hsa-miR-503-5p | 7389975 | 7389981 | 7mer-m8 | 7389974 | 7389996 | 145 | -18.43 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
CAediting_1524209 | chrX_134546392_- | ENSG00000187838.15 | ENST00000574401 | hsa-miR-503-5p | 7389975 | 7389981 | 7mer-m8 | 7389974 | 7389996 | 145 | -18.43 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
CAediting_1524209 | chrX_134546392_- | ENSG00000187838.15 | ENST00000576362 | hsa-miR-503-5p | 7389975 | 7389981 | 7mer-m8 | 7389974 | 7389996 | 145 | -18.43 |
CAediting_468389 | chr6_31355314_- | ENSG00000187838.15 | ENST00000575434 | hsa-miR-6891-5p | 7390313 | 7390319 | 7mer-m8 | 7390312 | 7390330 | 150 | -27.99 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000187838.15 | ENST00000573070 | hsa-miR-605-3p | 7389849 | 7389856 | 8mer-1a | 7389849 | 7389870 | 140 | -13.6 |
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The effects of the RNA editing to the stability of the RNA structures for TMEM256-PLSCR3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TMEM256-PLSCR3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_1160405 | chr17_7389863_- | 0.0021674154644834 | 0.385289551370515 | . | . | . | . |
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Relation with cancer stages for TMEM256-PLSCR3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TMEM256-PLSCR3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TMEM256-PLSCR3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMEM256-PLSCR3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |