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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: BLOC1S5-TXNDC5 (CAeditome ID:100526836)

Gene summary for BLOC1S5-TXNDC5

check button Gene summary
Gene informationGene symbol

BLOC1S5-TXNDC5

Gene ID

100526836

Gene nameBLOC1S5-TXNDC5 readthrough (NMD candidate)
SynonymsMUTED-TXNDC5
Cytomap

6p24.3

Type of genencRNA
DescriptionBLOC1S5-TXNDC5 readthrough (non-protein coding)MUTED-TXNDC5 readthrough (non-protein coding)
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for BLOC1S5-TXNDC5

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000259040.4
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_458023(7881583, -), CAediting_458024(7881601, -), CAediting_458025(7881620, -), CAediting_458026(7881684, -), CAediting_458027(7881685, -), CAediting_458028(7881689, -), CAediting_458029(7881709, -), CAediting_458030(7895941, -), CAediting_458031(7898146, -), CAediting_458032(7898150, -), CAediting_458033(7898172, -), CAediting_458034(7898199, -), CAediting_458035(7900714, -), CAediting_458036(7902208, -), CAediting_458037(7902259, -), CAediting_458038(7902260, -), CAediting_458039(7902268, -), CAediting_458040(7908650, -), CAediting_458041(7936774, -), CAediting_458042(7984014, -), CAediting_458043(7984015, -), CAediting_458044(7984023, -), CAediting_458045(7984046, -), CAediting_458046(8005755, -), CAediting_458047(8005784, -), CAediting_458048(8007353, -), CAediting_458049(8007391, -), CAediting_458050(8007418, -), CAediting_458051(8007444, -), CAediting_458052(8007451, -), CAediting_458053(8007453, -), CAediting_458054(8007461, -), CAediting_458055(8008305, -), CAediting_458056(8008306, -), CAediting_458057(8008314, -), CAediting_458058(8008326, -), CAediting_458059(8008345, -), CAediting_458060(8008457, -), CAediting_458061(8008460, -), CAediting_458062(8008466, -), CAediting_458063(8008498, -), CAediting_458064(8008515, -), CAediting_458065(8008540, -), CAediting_458066(8012936, -), CAediting_458067(8012945, -), CAediting_458068(8012949, -), CAediting_458069(8012956, -), CAediting_458070(8012970, -), CAediting_458071(8012971, -), CAediting_458072(8012972, -), CAediting_458073(8012980, -), CAediting_458074(8012985, -), CAediting_458075(8012993, -), CAediting_458076(8012998, -), CAediting_458077(8013003, -), CAediting_458078(8013010, -), CAediting_458079(8013023, -), CAediting_458080(8013044, -), CAediting_458081(8013045, -), CAediting_458082(8013047, -), CAediting_458083(8013052, -), CAediting_458084(8013058, -), CAediting_458085(8013060, -), CAediting_458086(8013066, -), CAediting_458087(8013067, -), CAediting_458088(8013087, -), CAediting_458089(8013091, -), CAediting_458090(8013093, -), CAediting_458091(8013098, -), CAediting_458092(8013103, -), CAediting_458093(8013106, -), CAediting_458094(8013115, -), CAediting_458095(8013128, -), CAediting_458096(8013129, -), CAediting_458097(8013132, -), CAediting_458098(8013133, -), CAediting_458099(8013152, -), CAediting_458100(8013153, -), CAediting_458101(8013158, -), CAediting_458102(8013168, -), CAediting_458103(8013182, -), CAediting_458104(8013189, -), CAediting_458105(8013193, -), CAediting_458106(8013201, -), CAediting_458107(8013209, -), CAediting_458108(8014307, -), CAediting_458109(8014309, -), CAediting_458110(8014321, -), CAediting_458111(8014326, -), CAediting_458112(8014334, -), CAediting_458113(8014339, -), CAediting_458114(8014346, -), CAediting_458115(8014363, -), CAediting_458116(8014366, -), CAediting_458117(8014370, -), CAediting_458118(8014371, -), CAediting_458119(8014376, -), CAediting_458120(8014379, -), CAediting_458121(8014380, -), CAediting_458122(8014389, -), CAediting_458123(8014398, -), CAediting_458124(8014406, -), CAediting_458125(8014411, -), CAediting_458126(8014412, -), CAediting_458127(8014438, -), CAediting_458128(8014442, -), CAediting_458129(8014443, -), CAediting_458130(8014444, -), CAediting_458131(8014445, -), CAediting_458132(8014447, -), CAediting_458133(8014450, -), CAediting_458134(8014451, -), CAediting_458135(8014452, -), CAediting_458136(8014453, -), CAediting_458137(8014456, -), CAediting_458138(8014467, -), CAediting_458139(8014468, -), CAediting_458140(8014477, -), CAediting_458141(8014478, -), CAediting_458142(8014492, -), CAediting_458143(8014493, -), CAediting_458144(8014501, -), CAediting_458145(8014505, -), CAediting_458146(8014506, -), CAediting_458147(8014514, -), CAediting_458148(8014520, -), CAediting_458149(8014524, -), CAediting_458150(8014546, -), CAediting_458151(8014547, -), CAediting_458152(8014553, -), CAediting_458153(8014555, -), CAediting_458154(8019337, -), CAediting_458155(8019365, -), CAediting_458156(8019501, -), CAediting_458157(8023427, -), CAediting_458158(8023478, -), CAediting_458159(8030233, -), CAediting_458160(8047340, -), CAediting_458161(8058590, -), CAediting_458162(8058595, -), CAediting_458163(8058646, -), CAediting_458164(8060855, -), CAediting_458165(8060921, -),

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RNA editing positional annotations for BLOC1S5-TXNDC5 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_458023chr6_7881583_-ncRNA_exonic
CAediting_458024chr6_7881601_-ncRNA_exonic
CAediting_458025chr6_7881620_-ncRNA_exonic
CAediting_458026chr6_7881684_-ncRNA_exonic
CAediting_458027chr6_7881685_-ncRNA_exonic
CAediting_458028chr6_7881689_-ncRNA_exonic
CAediting_458029chr6_7881709_-ncRNA_exonic
CAediting_458030chr6_7895941_-ncRNA_intronic
CAediting_458031chr6_7898146_-ncRNA_intronic
CAediting_458032chr6_7898150_-ncRNA_intronic
CAediting_458033chr6_7898172_-ncRNA_intronic
CAediting_458034chr6_7898199_-ncRNA_intronic
CAediting_458035chr6_7900714_-intronic
CAediting_458036chr6_7902208_-intronic
CAediting_458037chr6_7902259_-intronic
CAediting_458038chr6_7902260_-intronic
CAediting_458039chr6_7902268_-intronic
CAediting_458040chr6_7908650_-intronic
CAediting_458041chr6_7936774_-intronic
CAediting_458042chr6_7984014_-intronic
CAediting_458043chr6_7984015_-intronic
CAediting_458044chr6_7984023_-intronic
CAediting_458045chr6_7984046_-intronic
CAediting_458046chr6_8005755_-intronic
CAediting_458047chr6_8005784_-intronic
CAediting_458048chr6_8007353_-intronic
CAediting_458049chr6_8007391_-intronic
CAediting_458050chr6_8007418_-intronic
CAediting_458051chr6_8007444_-intronic
CAediting_458052chr6_8007451_-intronic
CAediting_458053chr6_8007453_-intronic
CAediting_458054chr6_8007461_-intronic
CAediting_458055chr6_8008305_-intronic
CAediting_458056chr6_8008306_-intronic
CAediting_458057chr6_8008314_-intronic
CAediting_458058chr6_8008326_-intronic
CAediting_458059chr6_8008345_-intronic
CAediting_458060chr6_8008457_-intronic
CAediting_458061chr6_8008460_-intronic
CAediting_458062chr6_8008466_-intronic
CAediting_458063chr6_8008498_-intronic
CAediting_458064chr6_8008515_-intronic
CAediting_458065chr6_8008540_-intronic
CAediting_458066chr6_8012936_-intronic
CAediting_458067chr6_8012945_-intronic
CAediting_458068chr6_8012949_-intronic
CAediting_458069chr6_8012956_-intronic
CAediting_458070chr6_8012970_-intronic
CAediting_458071chr6_8012971_-intronic
CAediting_458072chr6_8012972_-intronic
CAediting_458073chr6_8012980_-intronic
CAediting_458074chr6_8012985_-intronic
CAediting_458075chr6_8012993_-intronic
CAediting_458076chr6_8012998_-intronic
CAediting_458077chr6_8013003_-intronic
CAediting_458078chr6_8013010_-intronic
CAediting_458079chr6_8013023_-intronic
CAediting_458080chr6_8013044_-intronic
CAediting_458081chr6_8013045_-intronic
CAediting_458082chr6_8013047_-intronic
CAediting_458083chr6_8013052_-intronic
CAediting_458084chr6_8013058_-intronic
CAediting_458085chr6_8013060_-intronic
CAediting_458086chr6_8013066_-intronic
CAediting_458087chr6_8013067_-intronic
CAediting_458088chr6_8013087_-intronic
CAediting_458089chr6_8013091_-intronic
CAediting_458090chr6_8013093_-intronic
CAediting_458091chr6_8013098_-intronic
CAediting_458092chr6_8013103_-intronic
CAediting_458093chr6_8013106_-intronic
CAediting_458094chr6_8013115_-intronic
CAediting_458095chr6_8013128_-intronic
CAediting_458096chr6_8013129_-intronic
CAediting_458097chr6_8013132_-intronic
CAediting_458098chr6_8013133_-intronic
CAediting_458099chr6_8013152_-intronic
CAediting_458100chr6_8013153_-intronic
CAediting_458101chr6_8013158_-intronic
CAediting_458102chr6_8013168_-intronic
CAediting_458103chr6_8013182_-intronic
CAediting_458104chr6_8013189_-intronic
CAediting_458105chr6_8013193_-intronic
CAediting_458106chr6_8013201_-intronic
CAediting_458107chr6_8013209_-intronic
CAediting_458108chr6_8014307_-UTR3
CAediting_458109chr6_8014309_-UTR3
CAediting_458110chr6_8014321_-UTR3
CAediting_458111chr6_8014326_-UTR3
CAediting_458112chr6_8014334_-UTR3
CAediting_458113chr6_8014339_-UTR3
CAediting_458114chr6_8014346_-UTR3
CAediting_458115chr6_8014363_-UTR3
CAediting_458116chr6_8014366_-UTR3
CAediting_458117chr6_8014370_-UTR3
CAediting_458118chr6_8014371_-UTR3
CAediting_458119chr6_8014376_-UTR3
CAediting_458120chr6_8014379_-UTR3
CAediting_458121chr6_8014380_-UTR3
CAediting_458122chr6_8014389_-UTR3
CAediting_458123chr6_8014398_-UTR3
CAediting_458124chr6_8014406_-UTR3
CAediting_458125chr6_8014411_-UTR3
CAediting_458126chr6_8014412_-UTR3
CAediting_458127chr6_8014438_-UTR3
CAediting_458128chr6_8014442_-UTR3
CAediting_458129chr6_8014443_-UTR3
CAediting_458130chr6_8014444_-UTR3
CAediting_458131chr6_8014445_-UTR3
CAediting_458132chr6_8014447_-UTR3
CAediting_458133chr6_8014450_-UTR3
CAediting_458134chr6_8014451_-UTR3
CAediting_458135chr6_8014452_-UTR3
CAediting_458136chr6_8014453_-UTR3
CAediting_458137chr6_8014456_-UTR3
CAediting_458138chr6_8014467_-UTR3
CAediting_458139chr6_8014468_-UTR3
CAediting_458140chr6_8014477_-UTR3
CAediting_458141chr6_8014478_-UTR3
CAediting_458142chr6_8014492_-UTR3
CAediting_458143chr6_8014493_-UTR3
CAediting_458144chr6_8014501_-UTR3
CAediting_458145chr6_8014505_-UTR3
CAediting_458146chr6_8014506_-UTR3
CAediting_458147chr6_8014514_-UTR3
CAediting_458148chr6_8014520_-UTR3
CAediting_458149chr6_8014524_-UTR3
CAediting_458150chr6_8014546_-UTR3
CAediting_458151chr6_8014547_-UTR3
CAediting_458152chr6_8014553_-UTR3
CAediting_458153chr6_8014555_-UTR3
CAediting_458154chr6_8019337_-ncRNA_intronic
CAediting_458155chr6_8019365_-ncRNA_intronic
CAediting_458156chr6_8019501_-ncRNA_intronic
CAediting_458157chr6_8023427_-ncRNA_intronic
CAediting_458158chr6_8023478_-ncRNA_intronic
CAediting_458159chr6_8030233_-ncRNA_intronic
CAediting_458160chr6_8047340_-intronic
CAediting_458161chr6_8058590_-intronic
CAediting_458162chr6_8058595_-intronic
CAediting_458163chr6_8058646_-intronic
CAediting_458164chr6_8060855_-intronic
CAediting_458165chr6_8060921_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_458030chr6_7895941_-SINEAluAluJo
CAediting_458031chr6_7898146_-SINEAluAluSx1
CAediting_458032chr6_7898150_-SINEAluAluSx1
CAediting_458033chr6_7898172_-SINEAluAluSx1
CAediting_458034chr6_7898199_-SINEAluAluSx1
CAediting_458035chr6_7900714_-LTRERVL-MaLRMLT1A0
CAediting_458036chr6_7902208_-LTRERVL-MaLRMLT1C
CAediting_458037chr6_7902259_-LTRERVL-MaLRMLT1C
CAediting_458038chr6_7902260_-LTRERVL-MaLRMLT1C
CAediting_458039chr6_7902268_-LTRERVL-MaLRMLT1C
CAediting_458040chr6_7908650_-SINEAluAluJo
CAediting_458041chr6_7936774_-SINEAluAluSq2
CAediting_458042chr6_7984014_-SINEAluAluSx1
CAediting_458043chr6_7984015_-SINEAluAluSx1
CAediting_458044chr6_7984023_-SINEAluAluSx1
CAediting_458045chr6_7984046_-SINEAluAluSx1
CAediting_458046chr6_8005755_-SINEAluAluSz
CAediting_458047chr6_8005784_-SINEAluAluSz
CAediting_458048chr6_8007353_-SINEAluFLAM_C
CAediting_458049chr6_8007391_-SINEAluFLAM_C
CAediting_458050chr6_8007418_-SINEAluFLAM_C
CAediting_458051chr6_8007444_-SINEAluFLAM_C
CAediting_458052chr6_8007451_-SINEAluFLAM_C
CAediting_458053chr6_8007453_-SINEAluFLAM_C
CAediting_458054chr6_8007461_-SINEAluFLAM_C
CAediting_458055chr6_8008305_-SINEAluAluSq2
CAediting_458056chr6_8008306_-SINEAluAluSq2
CAediting_458057chr6_8008314_-SINEAluAluSq2
CAediting_458058chr6_8008326_-SINEAluAluSq2
CAediting_458059chr6_8008345_-SINEAluAluSq2
CAediting_458060chr6_8008457_-SINEAluAluSq2
CAediting_458061chr6_8008460_-SINEAluAluSq2
CAediting_458062chr6_8008466_-SINEAluAluSq2
CAediting_458063chr6_8008498_-SINEAluAluSq2
CAediting_458064chr6_8008515_-SINEAluAluSq2
CAediting_458065chr6_8008540_-SINEAluAluSq2
CAediting_458066chr6_8012936_-SINEAluAluSz
CAediting_458067chr6_8012945_-SINEAluAluSz
CAediting_458068chr6_8012949_-SINEAluAluSz
CAediting_458069chr6_8012956_-SINEAluAluSz
CAediting_458070chr6_8012970_-SINEAluAluSz
CAediting_458071chr6_8012971_-SINEAluAluSz
CAediting_458072chr6_8012972_-SINEAluAluSz
CAediting_458073chr6_8012980_-SINEAluAluSz
CAediting_458074chr6_8012985_-SINEAluAluSz
CAediting_458075chr6_8012993_-SINEAluAluSz
CAediting_458076chr6_8012998_-SINEAluAluSz
CAediting_458077chr6_8013003_-SINEAluAluSz
CAediting_458078chr6_8013010_-SINEAluAluSz
CAediting_458079chr6_8013023_-SINEAluAluSz
CAediting_458080chr6_8013044_-SINEAluAluSz
CAediting_458081chr6_8013045_-SINEAluAluSz
CAediting_458082chr6_8013047_-SINEAluAluSz
CAediting_458083chr6_8013052_-SINEAluAluSz
CAediting_458084chr6_8013058_-SINEAluAluSz
CAediting_458085chr6_8013060_-SINEAluAluSz
CAediting_458086chr6_8013066_-SINEAluAluSz
CAediting_458087chr6_8013067_-SINEAluAluSz
CAediting_458088chr6_8013087_-SINEAluAluSz
CAediting_458089chr6_8013091_-SINEAluAluSz
CAediting_458090chr6_8013093_-SINEAluAluSz
CAediting_458091chr6_8013098_-SINEAluAluSz
CAediting_458092chr6_8013103_-SINEAluAluSz
CAediting_458093chr6_8013106_-SINEAluAluSz
CAediting_458094chr6_8013115_-SINEAluAluSz
CAediting_458095chr6_8013128_-SINEAluAluSz
CAediting_458096chr6_8013129_-SINEAluAluSz
CAediting_458097chr6_8013132_-SINEAluAluSz
CAediting_458098chr6_8013133_-SINEAluAluSz
CAediting_458099chr6_8013152_-SINEAluAluSz
CAediting_458100chr6_8013153_-SINEAluAluSz
CAediting_458101chr6_8013158_-SINEAluAluSz
CAediting_458102chr6_8013168_-SINEAluAluSz
CAediting_458103chr6_8013182_-SINEAluAluSz
CAediting_458104chr6_8013189_-SINEAluAluSz
CAediting_458105chr6_8013193_-SINEAluAluSz
CAediting_458106chr6_8013201_-SINEAluAluSz
CAediting_458107chr6_8013209_-SINEAluAluSz
CAediting_458108chr6_8014307_-SINEAluAluSz
CAediting_458109chr6_8014309_-SINEAluAluSz
CAediting_458110chr6_8014321_-SINEAluAluSz
CAediting_458111chr6_8014326_-SINEAluAluSz
CAediting_458112chr6_8014334_-SINEAluAluSz
CAediting_458113chr6_8014339_-SINEAluAluSz
CAediting_458114chr6_8014346_-SINEAluAluSz
CAediting_458115chr6_8014363_-SINEAluAluSz
CAediting_458116chr6_8014366_-SINEAluAluSz
CAediting_458117chr6_8014370_-SINEAluAluSz
CAediting_458118chr6_8014371_-SINEAluAluSz
CAediting_458119chr6_8014376_-SINEAluAluSz
CAediting_458120chr6_8014379_-SINEAluAluSz
CAediting_458121chr6_8014380_-SINEAluAluSz
CAediting_458122chr6_8014389_-SINEAluAluSz
CAediting_458123chr6_8014398_-SINEAluAluSz
CAediting_458124chr6_8014406_-SINEAluAluSz
CAediting_458125chr6_8014411_-SINEAluAluSz
CAediting_458126chr6_8014412_-SINEAluAluSz
CAediting_458127chr6_8014438_-SINEAluAluSz
CAediting_458128chr6_8014442_-SINEAluAluSz
CAediting_458129chr6_8014443_-SINEAluAluSz
CAediting_458130chr6_8014444_-SINEAluAluSz
CAediting_458131chr6_8014445_-SINEAluAluSz
CAediting_458132chr6_8014447_-SINEAluAluSz
CAediting_458133chr6_8014450_-SINEAluAluSz
CAediting_458134chr6_8014451_-SINEAluAluSz
CAediting_458135chr6_8014452_-SINEAluAluSz
CAediting_458136chr6_8014453_-SINEAluAluSz
CAediting_458137chr6_8014456_-SINEAluAluSz
CAediting_458138chr6_8014467_-SINEAluAluSz
CAediting_458139chr6_8014468_-SINEAluAluSz
CAediting_458140chr6_8014477_-SINEAluAluSz
CAediting_458141chr6_8014478_-SINEAluAluSz
CAediting_458142chr6_8014492_-SINEAluAluSz
CAediting_458143chr6_8014493_-SINEAluAluSz
CAediting_458144chr6_8014501_-SINEAluAluSz
CAediting_458145chr6_8014505_-SINEAluAluSz
CAediting_458146chr6_8014506_-SINEAluAluSz
CAediting_458147chr6_8014514_-SINEAluAluSz
CAediting_458148chr6_8014520_-SINEAluAluSz
CAediting_458149chr6_8014524_-SINEAluAluSz
CAediting_458150chr6_8014546_-SINEAluAluSz
CAediting_458151chr6_8014547_-SINEAluAluSz
CAediting_458152chr6_8014553_-SINEAluAluSz
CAediting_458153chr6_8014555_-SINEAluAluSz
CAediting_458154chr6_8019337_-SINEAluAluSq2
CAediting_458155chr6_8019365_-SINEAluAluSq2
CAediting_458156chr6_8019501_-SINEAluAluSq2
CAediting_458157chr6_8023427_-SINEAluAluSx
CAediting_458158chr6_8023478_-SINEAluAluSx
CAediting_458159chr6_8030233_-SINEAluAluSg
CAediting_458160chr6_8047340_-SINEAluAluJb
CAediting_458161chr6_8058590_-SINEAluAluJb
CAediting_458162chr6_8058595_-SINEAluAluJb
CAediting_458163chr6_8058646_-SINEAluAluJb
CAediting_458164chr6_8060855_-SINEAluAluSz6
CAediting_458165chr6_8060921_-SINEAluAluSz6

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RNA A-to-I editing events in the alternative splicing sites for BLOC1S5-TXNDC5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000259040.4.BLOC1S5-TXNDC5.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000259040.4.BLOC1S5-TXNDC5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BLOC1S5-TXNDC5

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BLOC1S5-TXNDC5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for BLOC1S5-TXNDC5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_458024chr6_7881601_-ENSG00000259040.4ENST00000439343hsa-miR-3667-5p788159678816027mer-m878815957881615158.00-16.48
CAediting_458025chr6_7881620_-ENSG00000259040.4ENST00000439343hsa-miR-127-5p788161578816217mer-m878816147881640146.00-21.87
CAediting_458026chr6_7881684_-ENSG00000259040.4ENST00000439343hsa-miR-4511788167978816857mer-m878816787881699147.00-13.98
CAediting_458027chr6_7881685_-ENSG00000259040.4ENST00000439343hsa-miR-15b-3p788168178816877mer-m878816807881700144.00-9.39

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_458024chr6_7881601_-ENSG00000259040.4ENST00000439343hsa-miR-4432788159678816027mer-m878815957881619147-14.52

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000259040.4ENST00000439343hsa-miR-1303789167778916826mer78916767891697147-23.45
CAediting_1054808chr15_66496985_-ENSG00000259040.4ENST00000439343hsa-miR-4512788873678887427mer-m878887357888756145-24.91
CAediting_1229413chr17_67471544_+ENSG00000259040.4ENST00000439343hsa-miR-548aa788285978828657mer-m878828587882882147-8.5
CAediting_1368054chr19_46709310_-ENSG00000259040.4ENST00000439343hsa-miR-320e788310978831157mer-m878831087883126154-25.66
CAediting_228905chr2_188297554_+ENSG00000259040.4ENST00000439343hsa-miR-561-3p788152978815357mer-m878815287881549145-8.67
CAediting_396018chr5_1062918_-ENSG00000259040.4ENST00000439343hsa-miR-4635788207678820827mer-1a78820767882096145-21.66
CAediting_524911chr7_5495852_-ENSG00000259040.4ENST00000439343hsa-miR-589-3p788204778820537mer-m878820467882066146-18.41

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1306323chr19_13836462_-ENSG00000259040.4ENST00000439343hsa-miR-27a-3p788257978825857mer-1a78825797882600150-24.33
CAediting_396018chr5_1062918_-ENSG00000259040.4ENST00000439343hsa-miR-4635788212578821317mer-m878821247882143153-18.17

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BLOC1S5-TXNDC5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000439343.2nonsense_mediated_decaySoverviewSoverview
ENST00000539054.2protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_458023ENST00000439343.2chr6_7881583_--980.30-979.70-988.80
CAediting_458024ENST00000439343.2chr6_7881601_--984.40-979.70-988.80
CAediting_458025ENST00000439343.2chr6_7881620_--980.70-979.70-988.80
CAediting_458026ENST00000439343.2chr6_7881684_--979.70-979.70-988.80
CAediting_458027ENST00000439343.2chr6_7881685_--980.80-979.70-988.80
CAediting_458028ENST00000439343.2chr6_7881689_--980.10-979.70-988.80
CAediting_458029ENST00000439343.2chr6_7881709_--979.80-979.70-988.80
CAediting_458023ENST00000539054.2chr6_7881583_--931.90-930.70-938.80
CAediting_458024ENST00000539054.2chr6_7881601_--932.40-930.70-938.80
CAediting_458025ENST00000539054.2chr6_7881620_--932.00-930.70-938.80
CAediting_458026ENST00000539054.2chr6_7881684_--932.50-930.70-938.80
CAediting_458027ENST00000539054.2chr6_7881685_--931.80-930.70-938.80
CAediting_458028ENST00000539054.2chr6_7881689_--931.10-930.70-938.80
CAediting_458029ENST00000539054.2chr6_7881709_--930.80-930.70-938.80

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Relation with ADAR for BLOC1S5-TXNDC5

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
OVCAediting_458073chr6_8012980_-0.00686414274892680.345454463172715....
BRCACAediting_458085chr6_8013060_-0.003138333723016840.261169920491846....
BRCACAediting_458096chr6_8013129_-2.06949159316588e-060.381167373946353....
BRCACAediting_458097chr6_8013132_-2.31156765858722e-050.286928295454563....
THCACAediting_458097chr6_8013132_-0.01765375560943590.224869423366916....
SKCMCAediting_458097chr6_8013132_-0.004125649458666810.280361075638987....

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Relation with cancer stages for BLOC1S5-TXNDC5

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_458097chr6_8013132_-0.005073527737183970.336116248865442
KIRCpathologic_stageCAediting_458096chr6_8013129_-0.004612278109351190.222199841997204
KIRCpathologic_stageCAediting_458097chr6_8013132_-0.005554875748336210.17152192129165

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Relation with survival for BLOC1S5-TXNDC5

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for BLOC1S5-TXNDC5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for BLOC1S5-TXNDC5

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource