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Editing gene: LINC01426 (CAeditome ID:100506385)

Gene summary for LINC01426

Gene summary

Gene information	Gene symbol	LINC01426
	Gene ID	100506385
	Gene name	long intergenic non-protein coding RNA 1426
	Synonyms	lincRNA-uc002yug.2
	Cytomap	21q22.12
	Type of gene	ncRNA
	Description	-
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC01426

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000234380.1

RNA A-to-I editing events in Cancer.

CAediting_1450019(34747785, +), CAediting_1450020(34747801, +), CAediting_1450021(34747836, +), CAediting_1450022(34747842, +), CAediting_1450023(34747862, +), CAediting_1450024(34747866, +), CAediting_1450025(34747879, +), CAediting_1450026(34747891, +), CAediting_1450027(34747901, +), CAediting_1450028(34747936, +), CAediting_1450029(34747982, +), CAediting_1450030(34747983, +), CAediting_1450031(34747996, +), CAediting_1450032(34748000, +), CAediting_1450033(34748042, +), CAediting_1450034(34764796, +), CAediting_1450035(34770624, +), CAediting_1450036(34770625, +), CAediting_1450037(34770632, +), CAediting_1450038(34770638, +), CAediting_1450039(34770639, +), CAediting_1450040(34770658, +), CAediting_1450041(34770660, +), CAediting_1450042(34770670, +), CAediting_1450043(34770672, +), CAediting_1450044(34770692, +), CAediting_1450045(34770693, +), CAediting_1450046(34770701, +), CAediting_1450047(34770716, +), CAediting_1450048(34770741, +), CAediting_1450049(34770757, +), CAediting_1450050(34770763, +), CAediting_1450051(34770863, +), CAediting_1450052(34770864, +), CAediting_1450053(34770869, +), CAediting_1450054(34771952, +), CAediting_1450055(34771962, +), CAediting_1450056(34771963, +), CAediting_1450057(34771973, +), CAediting_1450058(34772010, +), CAediting_1450059(34772022, +), CAediting_1450060(34772023, +), CAediting_1450061(34772030, +), CAediting_1450062(34772039, +), CAediting_1450063(34772071, +), CAediting_1450064(34779706, +), CAediting_1450065(34779761, +), CAediting_1450066(34779793, +), CAediting_1450067(34779810, +), CAediting_1450068(34784684, +), CAediting_1450069(34784749, +), CAediting_1450070(34784750, +), CAediting_1450071(34784763, +),

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RNA editing positional annotations for LINC01426 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1450019	chr21_34747785_+	ncRNA_exonic
CAediting_1450020	chr21_34747801_+	ncRNA_exonic
CAediting_1450021	chr21_34747836_+	ncRNA_exonic
CAediting_1450022	chr21_34747842_+	ncRNA_exonic
CAediting_1450023	chr21_34747862_+	ncRNA_exonic
CAediting_1450024	chr21_34747866_+	ncRNA_exonic
CAediting_1450025	chr21_34747879_+	ncRNA_exonic
CAediting_1450026	chr21_34747891_+	ncRNA_exonic
CAediting_1450027	chr21_34747901_+	ncRNA_exonic
CAediting_1450028	chr21_34747936_+	ncRNA_exonic
CAediting_1450029	chr21_34747982_+	ncRNA_exonic
CAediting_1450030	chr21_34747983_+	ncRNA_exonic
CAediting_1450031	chr21_34747996_+	ncRNA_exonic
CAediting_1450032	chr21_34748000_+	ncRNA_exonic
CAediting_1450033	chr21_34748042_+	ncRNA_exonic
CAediting_1450034	chr21_34764796_+	ncRNA_intronic
CAediting_1450035	chr21_34770624_+	ncRNA_intronic
CAediting_1450036	chr21_34770625_+	ncRNA_intronic
CAediting_1450037	chr21_34770632_+	ncRNA_intronic
CAediting_1450038	chr21_34770638_+	ncRNA_intronic
CAediting_1450039	chr21_34770639_+	ncRNA_intronic
CAediting_1450040	chr21_34770658_+	ncRNA_intronic
CAediting_1450041	chr21_34770660_+	ncRNA_intronic
CAediting_1450042	chr21_34770670_+	ncRNA_intronic
CAediting_1450043	chr21_34770672_+	ncRNA_intronic
CAediting_1450044	chr21_34770692_+	ncRNA_intronic
CAediting_1450045	chr21_34770693_+	ncRNA_intronic
CAediting_1450046	chr21_34770701_+	ncRNA_intronic
CAediting_1450047	chr21_34770716_+	ncRNA_intronic
CAediting_1450048	chr21_34770741_+	ncRNA_intronic
CAediting_1450049	chr21_34770757_+	ncRNA_intronic
CAediting_1450050	chr21_34770763_+	ncRNA_intronic
CAediting_1450051	chr21_34770863_+	ncRNA_intronic
CAediting_1450052	chr21_34770864_+	ncRNA_intronic
CAediting_1450053	chr21_34770869_+	ncRNA_intronic
CAediting_1450054	chr21_34771952_+	ncRNA_intronic
CAediting_1450055	chr21_34771962_+	ncRNA_intronic
CAediting_1450056	chr21_34771963_+	ncRNA_intronic
CAediting_1450057	chr21_34771973_+	ncRNA_intronic
CAediting_1450058	chr21_34772010_+	ncRNA_intronic
CAediting_1450059	chr21_34772022_+	ncRNA_intronic
CAediting_1450060	chr21_34772023_+	ncRNA_intronic
CAediting_1450061	chr21_34772030_+	ncRNA_intronic
CAediting_1450062	chr21_34772039_+	ncRNA_intronic
CAediting_1450063	chr21_34772071_+	ncRNA_intronic
CAediting_1450064	chr21_34779706_+	ncRNA_intronic
CAediting_1450065	chr21_34779761_+	ncRNA_intronic
CAediting_1450066	chr21_34779793_+	ncRNA_intronic
CAediting_1450067	chr21_34779810_+	ncRNA_intronic
CAediting_1450068	chr21_34784684_+	ncRNA_exonic
CAediting_1450069	chr21_34784749_+	ncRNA_exonic
CAediting_1450070	chr21_34784750_+	ncRNA_exonic
CAediting_1450071	chr21_34784763_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1450019	chr21_34747785_+	SINE	Alu	AluSx1
CAediting_1450020	chr21_34747801_+	SINE	Alu	AluSx1
CAediting_1450021	chr21_34747836_+	SINE	Alu	AluSx1
CAediting_1450022	chr21_34747842_+	SINE	Alu	AluSx1
CAediting_1450023	chr21_34747862_+	SINE	Alu	AluSx1
CAediting_1450024	chr21_34747866_+	SINE	Alu	AluSx1
CAediting_1450025	chr21_34747879_+	SINE	Alu	AluSx1
CAediting_1450026	chr21_34747891_+	SINE	Alu	AluSx1
CAediting_1450027	chr21_34747901_+	SINE	Alu	AluSx1
CAediting_1450028	chr21_34747936_+	SINE	Alu	AluSx1
CAediting_1450029	chr21_34747982_+	SINE	Alu	AluSx1
CAediting_1450030	chr21_34747983_+	SINE	Alu	AluSx1
CAediting_1450031	chr21_34747996_+	SINE	Alu	AluSx1
CAediting_1450032	chr21_34748000_+	SINE	Alu	AluSx1
CAediting_1450033	chr21_34748042_+	SINE	Alu	AluSx1
CAediting_1450034	chr21_34764796_+	SINE	Alu	AluJr
CAediting_1450035	chr21_34770624_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450036	chr21_34770625_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450037	chr21_34770632_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450038	chr21_34770638_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450039	chr21_34770639_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450040	chr21_34770658_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450041	chr21_34770660_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450042	chr21_34770670_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450043	chr21_34770672_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450044	chr21_34770692_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450045	chr21_34770693_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450046	chr21_34770701_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450047	chr21_34770716_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450048	chr21_34770741_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450049	chr21_34770757_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450050	chr21_34770763_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450051	chr21_34770863_+	DNA	TcMar-Tigger	MER44D
CAediting_1450052	chr21_34770864_+	DNA	TcMar-Tigger	MER44D
CAediting_1450053	chr21_34770869_+	DNA	TcMar-Tigger	MER44D
CAediting_1450054	chr21_34771952_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450055	chr21_34771962_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450056	chr21_34771963_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450057	chr21_34771973_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450058	chr21_34772010_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450059	chr21_34772022_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450060	chr21_34772023_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450061	chr21_34772030_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450062	chr21_34772039_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450063	chr21_34772071_+	LTR	ERVL-MaLR	MLT1F1
CAediting_1450064	chr21_34779706_+	SINE	Alu	AluJo
CAediting_1450065	chr21_34779761_+	SINE	Alu	AluJo
CAediting_1450066	chr21_34779793_+	SINE	Alu	AluJo
CAediting_1450067	chr21_34779810_+	SINE	Alu	AluJo
CAediting_1450068	chr21_34784684_+	SINE	Alu	AluSg
CAediting_1450069	chr21_34784749_+	SINE	Alu	AluSg
CAediting_1450070	chr21_34784750_+	SINE	Alu	AluSg
CAediting_1450071	chr21_34784763_+	SINE	Alu	AluSg

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RNA A-to-I editing events in the alternative splicing sites for LINC01426

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000234380.1.LINC01426.

Correlation between RNA A-to-I editing and PSI for ENSG00000234380.1.LINC01426.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC01426

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LINC01426

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC01426

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1450031	chr21_34747996_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3622a-3p	34747993	34748000	8mer-1a	34747979	34748000	144	-13.89
CAediting_1450031	chr21_34747996_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3622b-3p	34747993	34748000	8mer-1a	34747980	34748000	153	-19.33
CAediting_1450031	chr21_34747996_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-544b	34747991	34747997	7mer-m8	34747978	34747998	157	-19.04
CAediting_1450031	chr21_34747996_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-7162-3p	34747990	34747996	7mer-m8	34747977	34747997	142	-17.47
CAediting_1450020	chr21_34747801_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1285-3p	34747801	34747806	6mer	34747786	34747807	160	-31.86
CAediting_1450020	chr21_34747801_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4486	34747800	34747806	7mer-m8	34747789	34747807	146	-18.47
CAediting_1450020	chr21_34747801_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4649-5p	34747799	34747805	7mer-1a	34746016	34747805	142	-36.41
CAediting_1450023	chr21_34747862_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3622a-3p	34747859	34747866	8mer-1a	34747845	34747866	148	-20.48
CAediting_1450023	chr21_34747862_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3622b-3p	34747859	34747866	8mer-1a	34747846	34747866	155	-21.98
CAediting_1450024	chr21_34747866_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1255b-2-3p	34747861	34747867	7mer-m8	34747847	34747868	140	-13.19
CAediting_1450024	chr21_34747866_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-589-5p	34747865	34747871	7mer-m8	34747851	34747872	160	-19.85
CAediting_1450027	chr21_34747901_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4772-3p	34747898	34747904	7mer-m8	34747884	34747905	164	-20.62
CAediting_1450030	chr21_34747983_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-28-5p	34747982	34747988	7mer-m8	34747968	34747989	156	-18.47
CAediting_1450030	chr21_34747983_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3139	34747982	34747988	7mer-m8	34747964	34747989	152	-23.38
CAediting_1450030	chr21_34747983_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-708-5p	34747982	34747988	7mer-m8	34747968	34747989	155	-25.23
CAediting_1450032	chr21_34748000_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1255b-2-3p	34747995	34748001	7mer-m8	34747981	34748002	140	-8.7
CAediting_1450033	chr21_34748042_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4284	34748040	34748047	8mer-1a	34748026	34748047	146	-20.01
CAediting_1450068	chr21_34784684_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-3190-5p	34784678	34784684	7mer-m8	34784666	34784685	154	-19.64
CAediting_1450019	chr21_34747785_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4469	34747782	34747788	7mer-m8	34746003	34747789	166	-26.92
CAediting_1450019	chr21_34747785_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-642a-5p	34747781	34747787	7mer-m8	34746003	34747788	153	-21.94
CAediting_1450019	chr21_34747785_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6892-3p	34746016	34747787	8mer-1a	34746003	34747787	140	-19.75
CAediting_1450025	chr21_34747879_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-128-1-5p	34747878	34747884	7mer-m8	34747863	34747885	157	-22.64
CAediting_1450025	chr21_34747879_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-128-2-5p	34747878	34747884	7mer-m8	34747863	34747885	141	-21.04
CAediting_1450025	chr21_34747879_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-132-5p	34747874	34747880	7mer-m8	34747859	34747881	142	-21
CAediting_1450029	chr21_34747982_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1289	34747981	34747987	7mer-m8	34747964	34747988	152	-20.5
CAediting_1450069	chr21_34784749_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-513a-5p	34784744	34784750	7mer-m8	34784734	34784751	156	-22.2
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-17-3p	34747836	34747842	7mer-m8	34747822	34747843	150	-16.31
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3929	34747840	34747845	6mer	34747822	34747846	140	-25.35
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-485-5p	34747840	34747846	7mer-m8	34747827	34747847	153	-19.07
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6884-5p	34747840	34747846	7mer-m8	34747824	34747847	150	-23.9

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1450069	chr21_34784749_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-10399-5p	34784745	34784751	7mer-m8	34784732	34784752	144	-9.82
CAediting_1450070	chr21_34784750_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-10399-5p	34784745	34784751	7mer-m8	34784732	34784752	144	-9.82
CAediting_1450071	chr21_34784763_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-1200	34784760	34784766	7mer-m8	34784746	34784767	140	-17.96
CAediting_1450068	chr21_34784684_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-4716-5p	34784683	34784689	7mer-m8	34784669	34784690	140	-10.69
CAediting_1450069	chr21_34784749_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-6504-3p	34784745	34784751	7mer-m8	34784734	34784752	152	-12.29
CAediting_1450070	chr21_34784750_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-6504-3p	34784745	34784751	7mer-m8	34784734	34784752	152	-12.29
CAediting_1450069	chr21_34784749_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-7151-3p	34784743	34784750	8mer-1a	34784730	34784750	146	-13.83
CAediting_1450020	chr21_34747801_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1262	34747799	34747805	7mer-m8	34747784	34747806	144	-15.93
CAediting_1450032	chr21_34748000_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-1288-5p	34747998	34748004	7mer-m8	34747986	34748005	141	-13.17
CAediting_1450021	chr21_34747836_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3174	34747833	34747838	6mer	34747819	34747839	142	-24.12
CAediting_1450023	chr21_34747862_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-3614-5p	34747860	34747866	7mer-1a	34747843	34747866	151	-21.52
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-377-5p	34747840	34747846	7mer-m8	34747824	34747847	150	-17.8
CAediting_1450022	chr21_34747842_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6086	34747840	34747846	7mer-m8	34747828	34747847	150	-23.99
CAediting_1450020	chr21_34747801_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6736-5p	34747799	34747805	7mer-m8	34747786	34747806	143	-20.94
CAediting_1450019	chr21_34747785_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6873-3p	34746016	34747785	6mer	34746002	34747788	140	-20.18
CAediting_1450019	chr21_34747785_+	ENSG00000234380.1	ENST00000419921.1	hsa-miR-6873-3p	34747781	34747787	7mer-m8	34746002	34747788	140	-20.18

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-605-3p	34784305	34784311	7mer-m8	34784291	34784312	146	-15.5
CAediting_846604	chr11_93733708_-	ENSG00000234380.1	ENST00000420877.1	hsa-miR-1304-3p	34782630	34782636	7mer-m8	34782616	34782637	140	-12.89
CAediting_980496	chr14_31014685_-	ENSG00000234380.1	ENST00000420877.1	hsa-miR-624-3p	34784694	34784700	7mer-m8	34784681	34784701	156	-16.49
CAediting_1351755	chr19_40282625_-	ENSG00000234380.1	ENST00000420877.1	hsa-miR-641	34783268	34783273	6mer	34783250	34783274	144	-20.59
CAediting_77128	chr1_85133844_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-4423-3p	34782615	34782621	7mer-m8	34782598	34782622	147	-15.15
CAediting_573001	chr7_92204086_-	ENSG00000234380.1	ENST00000420877.1	hsa-miR-1285-5p	34784856	34784861	6mer	34784842	34784862	143	-24.5
CAediting_396018	chr5_1062918_-	ENSG00000234380.1	ENST00000419921.1	hsa-miR-4635	34747991	34747997	7mer-m8	34747978	34747998	162	-22.6
CAediting_524911	chr7_5495852_-	ENSG00000234380.1	ENST00000419921.1	hsa-miR-589-3p	34748175	34748181	7mer-m8	34748157	34748182	150	-22.43

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_86358	chr1_109598906_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-197-5p	34783590	34783596	7mer-m8	34783575	34783597	140	-14.28
CAediting_748296	chr10_51299626_+	ENSG00000234380.1	ENST00000420877.1	hsa-miR-605-3p	34783501	34783508	8mer-1a	34783491	34783508	145	-12.51
CAediting_1351755	chr19_40282625_-	ENSG00000234380.1	ENST00000420877.1	hsa-miR-641	34782853	34782859	7mer-m8	34782837	34782860	153	-13.19

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC01426

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for LINC01426

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_1450031	chr21_34747996_+	.	.	0.0142015751459188	0.161505320463018	.	.

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Relation with cancer stages for LINC01426

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for LINC01426

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LINC01426

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC01426

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
LINC01426	C0004238	Atrial Fibrillation	1	CTD_human
LINC01426	C0235480	Paroxysmal atrial fibrillation	1	CTD_human
LINC01426	C2585653	Persistent atrial fibrillation	1	CTD_human
LINC01426	C3468561	familial atrial fibrillation	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene