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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NARF-IT1 (CAeditome ID:100506001) |
Gene summary for NARF-IT1 |
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Gene information | Gene symbol | NARF-IT1 | Gene ID | 100506001 |
Gene name | NARF intronic transcript 1 | |
Synonyms | NARF-OT1 | |
Cytomap | 17q25.3 | |
Type of gene | ncRNA | |
Description | NARF intronic transcript 1 (non-protein coding)NARF overlapping transcript 1 (non-protein coding) | |
Modification date | 20200624 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for NARF-IT1 |
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CAediting_1248360(82482722, +), CAediting_1248361(82482815, +), CAediting_1248362(82482867, +), CAediting_1248363(82482872, +), CAediting_1248364(82482894, +), CAediting_1248365(82482895, +), CAediting_1248366(82482899, +), CAediting_1248367(82482934, +), CAediting_1248368(82482947, +), CAediting_1248369(82482952, +), CAediting_1248370(82482960, +), CAediting_1248371(82482975, +), CAediting_1248372(82482978, +), CAediting_1248373(82483056, +), CAediting_1248374(82483062, +), CAediting_1248375(82483131, +), CAediting_1248376(82483132, +), CAediting_1248377(82483166, +), CAediting_1248378(82483169, +), CAediting_1248379(82483172, +), CAediting_1248380(82483176, +), CAediting_1248381(82483185, +), CAediting_1248382(82483190, +), CAediting_1248383(82483192, +), CAediting_1248384(82483198, +), CAediting_1248385(82483225, +), CAediting_1248386(82483226, +), CAediting_1248387(82483231, +), CAediting_1248388(82483234, +), CAediting_1248389(82483239, +), CAediting_1248390(82483240, +), CAediting_1248391(82483251, +), CAediting_1248392(82483253, +), CAediting_1248393(82483258, +), CAediting_1248394(82483260, +), CAediting_1248395(82483266, +), CAediting_1248396(82483269, +), |
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RNA editing positional annotations for NARF-IT1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1248360 | chr17_82482722_+ | ncRNA_exonic |
CAediting_1248361 | chr17_82482815_+ | ncRNA_intronic |
CAediting_1248362 | chr17_82482867_+ | ncRNA_intronic |
CAediting_1248363 | chr17_82482872_+ | ncRNA_intronic |
CAediting_1248364 | chr17_82482894_+ | ncRNA_intronic |
CAediting_1248365 | chr17_82482895_+ | ncRNA_intronic |
CAediting_1248366 | chr17_82482899_+ | ncRNA_intronic |
CAediting_1248367 | chr17_82482934_+ | ncRNA_intronic |
CAediting_1248368 | chr17_82482947_+ | ncRNA_intronic |
CAediting_1248369 | chr17_82482952_+ | ncRNA_intronic |
CAediting_1248370 | chr17_82482960_+ | ncRNA_intronic |
CAediting_1248371 | chr17_82482975_+ | ncRNA_intronic |
CAediting_1248372 | chr17_82482978_+ | ncRNA_intronic |
CAediting_1248373 | chr17_82483056_+ | ncRNA_intronic |
CAediting_1248374 | chr17_82483062_+ | ncRNA_intronic |
CAediting_1248375 | chr17_82483131_+ | ncRNA_intronic |
CAediting_1248376 | chr17_82483132_+ | ncRNA_intronic |
CAediting_1248377 | chr17_82483166_+ | ncRNA_intronic |
CAediting_1248378 | chr17_82483169_+ | ncRNA_intronic |
CAediting_1248379 | chr17_82483172_+ | splicing |
CAediting_1248380 | chr17_82483176_+ | exonic |
CAediting_1248381 | chr17_82483185_+ | exonic;splicing |
CAediting_1248382 | chr17_82483190_+ | exonic |
CAediting_1248383 | chr17_82483192_+ | exonic |
CAediting_1248384 | chr17_82483198_+ | exonic |
CAediting_1248385 | chr17_82483225_+ | exonic |
CAediting_1248386 | chr17_82483226_+ | exonic |
CAediting_1248387 | chr17_82483231_+ | exonic |
CAediting_1248388 | chr17_82483234_+ | exonic |
CAediting_1248389 | chr17_82483239_+ | exonic |
CAediting_1248390 | chr17_82483240_+ | exonic |
CAediting_1248391 | chr17_82483251_+ | exonic |
CAediting_1248392 | chr17_82483253_+ | exonic |
CAediting_1248393 | chr17_82483258_+ | exonic |
CAediting_1248394 | chr17_82483260_+ | exonic |
CAediting_1248395 | chr17_82483266_+ | exonic |
CAediting_1248396 | chr17_82483269_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1248360 | chr17_82482722_+ | SINE | Alu | FLAM_C |
CAediting_1248361 | chr17_82482815_+ | SINE | Alu | AluSx |
CAediting_1248362 | chr17_82482867_+ | SINE | Alu | AluSx |
CAediting_1248363 | chr17_82482872_+ | SINE | Alu | AluSx |
CAediting_1248364 | chr17_82482894_+ | SINE | Alu | AluSx |
CAediting_1248365 | chr17_82482895_+ | SINE | Alu | AluSx |
CAediting_1248366 | chr17_82482899_+ | SINE | Alu | AluSx |
CAediting_1248367 | chr17_82482934_+ | SINE | Alu | AluSx |
CAediting_1248368 | chr17_82482947_+ | SINE | Alu | AluSx |
CAediting_1248369 | chr17_82482952_+ | SINE | Alu | AluSx |
CAediting_1248370 | chr17_82482960_+ | SINE | Alu | AluSx |
CAediting_1248371 | chr17_82482975_+ | SINE | Alu | AluSx |
CAediting_1248372 | chr17_82482978_+ | SINE | Alu | AluSx |
CAediting_1248373 | chr17_82483056_+ | SINE | Alu | AluSx |
CAediting_1248374 | chr17_82483062_+ | SINE | Alu | AluSx |
CAediting_1248375 | chr17_82483131_+ | SINE | Alu | AluSx |
CAediting_1248376 | chr17_82483132_+ | SINE | Alu | AluSx |
CAediting_1248377 | chr17_82483166_+ | SINE | Alu | AluSx |
CAediting_1248378 | chr17_82483169_+ | SINE | Alu | AluSx |
CAediting_1248379 | chr17_82483172_+ | SINE | Alu | AluSx |
CAediting_1248380 | chr17_82483176_+ | SINE | Alu | AluSx |
CAediting_1248381 | chr17_82483185_+ | SINE | Alu | AluSx |
CAediting_1248382 | chr17_82483190_+ | SINE | Alu | AluSx |
CAediting_1248383 | chr17_82483192_+ | SINE | Alu | AluSx |
CAediting_1248384 | chr17_82483198_+ | SINE | Alu | AluSx |
CAediting_1248385 | chr17_82483225_+ | SINE | Alu | AluSx |
CAediting_1248386 | chr17_82483226_+ | SINE | Alu | AluSx |
CAediting_1248387 | chr17_82483231_+ | SINE | Alu | AluSx |
CAediting_1248388 | chr17_82483234_+ | SINE | Alu | AluSx |
CAediting_1248389 | chr17_82483239_+ | SINE | Alu | AluSx |
CAediting_1248390 | chr17_82483240_+ | SINE | Alu | AluSx |
CAediting_1248391 | chr17_82483251_+ | SINE | Alu | AluSx |
CAediting_1248392 | chr17_82483253_+ | SINE | Alu | AluSx |
CAediting_1248393 | chr17_82483258_+ | SINE | Alu | AluSx |
CAediting_1248394 | chr17_82483260_+ | SINE | Alu | AluSx |
CAediting_1248395 | chr17_82483266_+ | SINE | Alu | AluSx |
CAediting_1248396 | chr17_82483269_+ | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for NARF-IT1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NARF-IT1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NARF-IT1 |
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The effects of the RNA editing to the miRNA binding sites for NARF-IT1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000266236.1 | ENST00000584012.1 | hsa-miR-4512 | 82482236 | 82482242 | 7mer-m8 | 82482222 | 82482243 | 140 | -14.21 |
CAediting_604450 | chr7_133034877_- | ENSG00000266236.1 | ENST00000584012.1 | hsa-miR-3654 | 82482454 | 82482460 | 7mer-m8 | 82482443 | 82482461 | 149 | -17.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NARF-IT1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NARF-IT1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
TGCT | CAediting_1248389 | chr17_82483239_+ | . | . | 0.0463694213930191 | 0.269796465051234 | . | . |
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Relation with cancer stages for NARF-IT1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NARF-IT1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NARF-IT1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NARF-IT1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |