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Editing gene: THAP9-AS1 (CAeditome ID:100499177)

Gene summary for THAP9-AS1

Gene summary

Gene information	Gene symbol	THAP9-AS1
	Gene ID	100499177
	Gene name	THAP9 antisense RNA 1
	Synonyms	-
	Cytomap	4q21.22
	Type of gene	ncRNA
	Description	THAP9 antisense RNA 1 (non-protein coding)
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for THAP9-AS1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000251022.5

RNA A-to-I editing events in Cancer.

CAediting_372060(82893333, -), CAediting_372061(82894600, -), CAediting_372062(82895209, -), CAediting_372063(82895212, -), CAediting_372064(82895237, -), CAediting_372065(82895247, -), CAediting_372066(82895253, -), CAediting_372067(82895260, -), CAediting_372068(82895267, -), CAediting_372069(82895268, -), CAediting_372070(82895277, -), CAediting_372071(82895288, -), CAediting_372072(82895301, -), CAediting_372073(82895303, -), CAediting_372074(82895326, -), CAediting_372075(82895335, -), CAediting_372076(82895340, -), CAediting_372077(82895348, -), CAediting_372078(82895361, -), CAediting_372079(82895384, -), CAediting_372080(82895386, -), CAediting_372081(82895408, -), CAediting_372082(82895413, -), CAediting_372083(82895432, -), CAediting_372084(82895456, -), CAediting_372085(82896248, -), CAediting_372086(82896249, -), CAediting_372087(82896283, -), CAediting_372088(82896286, -), CAediting_372089(82896294, -), CAediting_372090(82896310, -), CAediting_372091(82896314, -), CAediting_372092(82896315, -), CAediting_372093(82896320, -), CAediting_372094(82896324, -), CAediting_372095(82896329, -), CAediting_372096(82896334, -), CAediting_372097(82896346, -), CAediting_372098(82896350, -), CAediting_372099(82896355, -), CAediting_372100(82896356, -), CAediting_372101(82896362, -), CAediting_372102(82896366, -), CAediting_372103(82896374, -), CAediting_372104(82896382, -), CAediting_372105(82896385, -), CAediting_372106(82896386, -), CAediting_372107(82896387, -), CAediting_372108(82896388, -), CAediting_372109(82896391, -), CAediting_372110(82896393, -), CAediting_372111(82896394, -), CAediting_372112(82896395, -), CAediting_372113(82896400, -), CAediting_372114(82896411, -), CAediting_372115(82896419, -), CAediting_372116(82896421, -), CAediting_372117(82896422, -), CAediting_372118(82896436, -), CAediting_372119(82896437, -), CAediting_372120(82896442, -), CAediting_372121(82896464, -), CAediting_372122(82896468, -), CAediting_372123(82896475, -), CAediting_372124(82896476, -), CAediting_372125(82896485, -), CAediting_372126(82896490, -), CAediting_372127(82896491, -), CAediting_372128(82896509, -), CAediting_372129(82896513, -), CAediting_372130(82896587, -), CAediting_372131(82896590, -), CAediting_372132(82896592, -), CAediting_372133(82896601, -), CAediting_372134(82896611, -), CAediting_372135(82896619, -), CAediting_372136(82896624, -), CAediting_372137(82896640, -), CAediting_372138(82896641, -), CAediting_372139(82896647, -), CAediting_372140(82896650, -), CAediting_372141(82896651, -), CAediting_372142(82896660, -), CAediting_372143(82897552, -), CAediting_372144(82897555, -), CAediting_372145(82897563, -), CAediting_372146(82897607, -), CAediting_372147(82897617, -), CAediting_372148(82897627, -), CAediting_372149(82897630, -), CAediting_372150(82897631, -), CAediting_372151(82897639, -), CAediting_372152(82897644, -), CAediting_372153(82897652, -), CAediting_372154(82897653, -), CAediting_372155(82897676, -), CAediting_372156(82897677, -), CAediting_372157(82897687, -), CAediting_372158(82897692, -), CAediting_372159(82897717, -), CAediting_372160(82897725, -),

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RNA editing positional annotations for THAP9-AS1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_372060	chr4_82893333_-	ncRNA_exonic
CAediting_372061	chr4_82894600_-	ncRNA_exonic
CAediting_372062	chr4_82895209_-	ncRNA_exonic
CAediting_372063	chr4_82895212_-	ncRNA_exonic
CAediting_372064	chr4_82895237_-	ncRNA_exonic
CAediting_372065	chr4_82895247_-	ncRNA_exonic
CAediting_372066	chr4_82895253_-	ncRNA_exonic
CAediting_372067	chr4_82895260_-	ncRNA_exonic
CAediting_372068	chr4_82895267_-	ncRNA_exonic
CAediting_372069	chr4_82895268_-	ncRNA_exonic
CAediting_372070	chr4_82895277_-	ncRNA_exonic
CAediting_372071	chr4_82895288_-	ncRNA_exonic
CAediting_372072	chr4_82895301_-	ncRNA_exonic
CAediting_372073	chr4_82895303_-	ncRNA_exonic
CAediting_372074	chr4_82895326_-	ncRNA_exonic
CAediting_372075	chr4_82895335_-	ncRNA_exonic
CAediting_372076	chr4_82895340_-	ncRNA_exonic
CAediting_372077	chr4_82895348_-	ncRNA_exonic
CAediting_372078	chr4_82895361_-	ncRNA_exonic
CAediting_372079	chr4_82895384_-	ncRNA_exonic
CAediting_372080	chr4_82895386_-	ncRNA_exonic
CAediting_372081	chr4_82895408_-	ncRNA_exonic
CAediting_372082	chr4_82895413_-	ncRNA_exonic
CAediting_372083	chr4_82895432_-	ncRNA_exonic
CAediting_372084	chr4_82895456_-	ncRNA_exonic
CAediting_372085	chr4_82896248_-	ncRNA_intronic
CAediting_372086	chr4_82896249_-	ncRNA_intronic
CAediting_372087	chr4_82896283_-	ncRNA_intronic
CAediting_372088	chr4_82896286_-	ncRNA_intronic
CAediting_372089	chr4_82896294_-	ncRNA_intronic
CAediting_372090	chr4_82896310_-	ncRNA_intronic
CAediting_372091	chr4_82896314_-	ncRNA_intronic
CAediting_372092	chr4_82896315_-	ncRNA_intronic
CAediting_372093	chr4_82896320_-	ncRNA_intronic
CAediting_372094	chr4_82896324_-	ncRNA_intronic
CAediting_372095	chr4_82896329_-	ncRNA_intronic
CAediting_372096	chr4_82896334_-	ncRNA_intronic
CAediting_372097	chr4_82896346_-	ncRNA_intronic
CAediting_372098	chr4_82896350_-	ncRNA_intronic
CAediting_372099	chr4_82896355_-	ncRNA_intronic
CAediting_372100	chr4_82896356_-	ncRNA_intronic
CAediting_372101	chr4_82896362_-	ncRNA_intronic
CAediting_372102	chr4_82896366_-	ncRNA_intronic
CAediting_372103	chr4_82896374_-	ncRNA_intronic
CAediting_372104	chr4_82896382_-	ncRNA_intronic
CAediting_372105	chr4_82896385_-	ncRNA_intronic
CAediting_372106	chr4_82896386_-	ncRNA_intronic
CAediting_372107	chr4_82896387_-	ncRNA_intronic
CAediting_372108	chr4_82896388_-	ncRNA_intronic
CAediting_372109	chr4_82896391_-	ncRNA_intronic
CAediting_372110	chr4_82896393_-	ncRNA_intronic
CAediting_372111	chr4_82896394_-	ncRNA_intronic
CAediting_372112	chr4_82896395_-	ncRNA_intronic
CAediting_372113	chr4_82896400_-	ncRNA_intronic
CAediting_372114	chr4_82896411_-	ncRNA_intronic
CAediting_372115	chr4_82896419_-	ncRNA_intronic
CAediting_372116	chr4_82896421_-	ncRNA_intronic
CAediting_372117	chr4_82896422_-	ncRNA_intronic
CAediting_372118	chr4_82896436_-	ncRNA_intronic
CAediting_372119	chr4_82896437_-	ncRNA_intronic
CAediting_372120	chr4_82896442_-	ncRNA_intronic
CAediting_372121	chr4_82896464_-	ncRNA_intronic
CAediting_372122	chr4_82896468_-	ncRNA_intronic
CAediting_372123	chr4_82896475_-	ncRNA_intronic
CAediting_372124	chr4_82896476_-	ncRNA_intronic
CAediting_372125	chr4_82896485_-	ncRNA_intronic
CAediting_372126	chr4_82896490_-	ncRNA_intronic
CAediting_372127	chr4_82896491_-	ncRNA_intronic
CAediting_372128	chr4_82896509_-	ncRNA_intronic
CAediting_372129	chr4_82896513_-	ncRNA_intronic
CAediting_372130	chr4_82896587_-	ncRNA_intronic
CAediting_372131	chr4_82896590_-	ncRNA_intronic
CAediting_372132	chr4_82896592_-	ncRNA_intronic
CAediting_372133	chr4_82896601_-	ncRNA_intronic
CAediting_372134	chr4_82896611_-	ncRNA_intronic
CAediting_372135	chr4_82896619_-	ncRNA_intronic
CAediting_372136	chr4_82896624_-	ncRNA_intronic
CAediting_372137	chr4_82896640_-	ncRNA_intronic
CAediting_372138	chr4_82896641_-	ncRNA_intronic
CAediting_372139	chr4_82896647_-	ncRNA_intronic
CAediting_372140	chr4_82896650_-	ncRNA_intronic
CAediting_372141	chr4_82896651_-	ncRNA_intronic
CAediting_372142	chr4_82896660_-	ncRNA_intronic
CAediting_372143	chr4_82897552_-	ncRNA_intronic
CAediting_372144	chr4_82897555_-	ncRNA_intronic
CAediting_372145	chr4_82897563_-	ncRNA_intronic
CAediting_372146	chr4_82897607_-	ncRNA_intronic
CAediting_372147	chr4_82897617_-	ncRNA_intronic
CAediting_372148	chr4_82897627_-	ncRNA_intronic
CAediting_372149	chr4_82897630_-	ncRNA_intronic
CAediting_372150	chr4_82897631_-	ncRNA_intronic
CAediting_372151	chr4_82897639_-	ncRNA_intronic
CAediting_372152	chr4_82897644_-	ncRNA_intronic
CAediting_372153	chr4_82897652_-	ncRNA_intronic
CAediting_372154	chr4_82897653_-	ncRNA_intronic
CAediting_372155	chr4_82897676_-	ncRNA_intronic
CAediting_372156	chr4_82897677_-	ncRNA_intronic
CAediting_372157	chr4_82897687_-	ncRNA_intronic
CAediting_372158	chr4_82897692_-	ncRNA_intronic
CAediting_372159	chr4_82897717_-	ncRNA_intronic
CAediting_372160	chr4_82897725_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_372060	chr4_82893333_-	SINE	Alu	AluJr
CAediting_372061	chr4_82894600_-	DNA	TcMar-Mariner	HSMAR2
CAediting_372062	chr4_82895209_-	SINE	Alu	AluSz6
CAediting_372063	chr4_82895212_-	SINE	Alu	AluSz6
CAediting_372064	chr4_82895237_-	SINE	Alu	AluSz6
CAediting_372065	chr4_82895247_-	SINE	Alu	AluSz6
CAediting_372066	chr4_82895253_-	SINE	Alu	AluSz6
CAediting_372067	chr4_82895260_-	SINE	Alu	AluSz6
CAediting_372068	chr4_82895267_-	SINE	Alu	AluSz6
CAediting_372069	chr4_82895268_-	SINE	Alu	AluSz6
CAediting_372070	chr4_82895277_-	SINE	Alu	AluSz6
CAediting_372071	chr4_82895288_-	SINE	Alu	AluSz6
CAediting_372072	chr4_82895301_-	SINE	Alu	AluSz6
CAediting_372073	chr4_82895303_-	SINE	Alu	AluSz6
CAediting_372074	chr4_82895326_-	SINE	Alu	AluSz6
CAediting_372075	chr4_82895335_-	SINE	Alu	AluSz6
CAediting_372076	chr4_82895340_-	SINE	Alu	AluSz6
CAediting_372077	chr4_82895348_-	SINE	Alu	AluSz6
CAediting_372078	chr4_82895361_-	SINE	Alu	AluSz6
CAediting_372079	chr4_82895384_-	SINE	Alu	AluSz6
CAediting_372080	chr4_82895386_-	SINE	Alu	AluSz6
CAediting_372081	chr4_82895408_-	SINE	Alu	AluSz6
CAediting_372082	chr4_82895413_-	SINE	Alu	AluSz6
CAediting_372083	chr4_82895432_-	SINE	Alu	AluSz6
CAediting_372084	chr4_82895456_-	SINE	Alu	AluSz6
CAediting_372085	chr4_82896248_-	SINE	Alu	AluSx
CAediting_372086	chr4_82896249_-	SINE	Alu	AluSx
CAediting_372087	chr4_82896283_-	SINE	Alu	AluSx
CAediting_372088	chr4_82896286_-	SINE	Alu	AluSx
CAediting_372089	chr4_82896294_-	SINE	Alu	AluSx
CAediting_372090	chr4_82896310_-	SINE	Alu	AluSx
CAediting_372091	chr4_82896314_-	SINE	Alu	AluSx
CAediting_372092	chr4_82896315_-	SINE	Alu	AluSx
CAediting_372093	chr4_82896320_-	SINE	Alu	AluSx
CAediting_372094	chr4_82896324_-	SINE	Alu	AluSx
CAediting_372095	chr4_82896329_-	SINE	Alu	AluSx
CAediting_372096	chr4_82896334_-	SINE	Alu	AluSx
CAediting_372097	chr4_82896346_-	SINE	Alu	AluSx
CAediting_372098	chr4_82896350_-	SINE	Alu	AluSx
CAediting_372099	chr4_82896355_-	SINE	Alu	AluSx
CAediting_372100	chr4_82896356_-	SINE	Alu	AluSx
CAediting_372101	chr4_82896362_-	SINE	Alu	AluSx
CAediting_372102	chr4_82896366_-	SINE	Alu	AluSx
CAediting_372103	chr4_82896374_-	SINE	Alu	AluSx
CAediting_372104	chr4_82896382_-	SINE	Alu	AluSx
CAediting_372105	chr4_82896385_-	SINE	Alu	AluSx
CAediting_372106	chr4_82896386_-	SINE	Alu	AluSx
CAediting_372107	chr4_82896387_-	SINE	Alu	AluSx
CAediting_372108	chr4_82896388_-	SINE	Alu	AluSx
CAediting_372109	chr4_82896391_-	SINE	Alu	AluSx
CAediting_372110	chr4_82896393_-	SINE	Alu	AluSx
CAediting_372111	chr4_82896394_-	SINE	Alu	AluSx
CAediting_372112	chr4_82896395_-	SINE	Alu	AluSx
CAediting_372113	chr4_82896400_-	SINE	Alu	AluSx
CAediting_372114	chr4_82896411_-	SINE	Alu	AluSx
CAediting_372115	chr4_82896419_-	SINE	Alu	AluSx
CAediting_372116	chr4_82896421_-	SINE	Alu	AluSx
CAediting_372117	chr4_82896422_-	SINE	Alu	AluSx
CAediting_372118	chr4_82896436_-	SINE	Alu	AluSx
CAediting_372119	chr4_82896437_-	SINE	Alu	AluSx
CAediting_372120	chr4_82896442_-	SINE	Alu	AluSx
CAediting_372121	chr4_82896464_-	SINE	Alu	AluSx
CAediting_372122	chr4_82896468_-	SINE	Alu	AluSx
CAediting_372123	chr4_82896475_-	SINE	Alu	AluSx
CAediting_372124	chr4_82896476_-	SINE	Alu	AluSx
CAediting_372125	chr4_82896485_-	SINE	Alu	AluSx
CAediting_372126	chr4_82896490_-	SINE	Alu	AluSx
CAediting_372127	chr4_82896491_-	SINE	Alu	AluSx
CAediting_372128	chr4_82896509_-	SINE	Alu	AluSx
CAediting_372129	chr4_82896513_-	SINE	Alu	AluSx
CAediting_372130	chr4_82896587_-	SINE	Alu	AluSx3
CAediting_372131	chr4_82896590_-	SINE	Alu	AluSx3
CAediting_372132	chr4_82896592_-	SINE	Alu	AluSx3
CAediting_372133	chr4_82896601_-	SINE	Alu	AluSx3
CAediting_372134	chr4_82896611_-	SINE	Alu	AluSx3
CAediting_372135	chr4_82896619_-	SINE	Alu	AluSx3
CAediting_372136	chr4_82896624_-	SINE	Alu	AluSx3
CAediting_372137	chr4_82896640_-	SINE	Alu	AluSx3
CAediting_372138	chr4_82896641_-	SINE	Alu	AluSx3
CAediting_372139	chr4_82896647_-	SINE	Alu	AluSx3
CAediting_372140	chr4_82896650_-	SINE	Alu	AluSx3
CAediting_372141	chr4_82896651_-	SINE	Alu	AluSx3
CAediting_372142	chr4_82896660_-	SINE	Alu	AluSx3
CAediting_372143	chr4_82897552_-	SINE	Alu	AluSx3
CAediting_372144	chr4_82897555_-	SINE	Alu	AluSx3
CAediting_372145	chr4_82897563_-	SINE	Alu	AluSx3
CAediting_372146	chr4_82897607_-	SINE	Alu	AluSx3
CAediting_372147	chr4_82897617_-	SINE	Alu	AluSx3
CAediting_372148	chr4_82897627_-	SINE	Alu	AluSx3
CAediting_372149	chr4_82897630_-	SINE	Alu	AluSx3
CAediting_372150	chr4_82897631_-	SINE	Alu	AluSx3
CAediting_372151	chr4_82897639_-	SINE	Alu	AluSx3
CAediting_372152	chr4_82897644_-	SINE	Alu	AluSx3
CAediting_372153	chr4_82897652_-	SINE	Alu	AluSx3
CAediting_372154	chr4_82897653_-	SINE	Alu	AluSx3
CAediting_372155	chr4_82897676_-	SINE	Alu	AluSx3
CAediting_372156	chr4_82897677_-	SINE	Alu	AluSx3
CAediting_372157	chr4_82897687_-	SINE	Alu	AluSx3
CAediting_372158	chr4_82897692_-	SINE	Alu	AluSx3
CAediting_372159	chr4_82897717_-	SINE	Alu	AluSx3
CAediting_372160	chr4_82897725_-	SINE	Alu	AluSx3

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RNA A-to-I editing events in the alternative splicing sites for THAP9-AS1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000251022.5.THAP9-AS1.

Correlation between RNA A-to-I editing and PSI for ENSG00000251022.5.THAP9-AS1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for THAP9-AS1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for THAP9-AS1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for THAP9-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_372071	chr4_82895288_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4445-3p	82895287	82895293	7mer-m8	82895286	82895306	152	-17.61
CAediting_372071	chr4_82895288_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-548al	82895287	82895293	7mer-m8	82895286	82895309	148	-14.97
CAediting_372080	chr4_82895386_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-606	82895380	82895387	8mer-1a	82895380	82895400	152	-10.98
CAediting_372062	chr4_82895209_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4466	82895205	82895211	7mer-m8	82895204	82895221	140	-20.65
CAediting_372062	chr4_82895209_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-675-5p	82895205	82895211	7mer-m8	82895204	82895226	142	-19.11
CAediting_372064	chr4_82895237_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-3189-3p	82895236	82895242	7mer-m8	82895235	82895254	153	-22.79
CAediting_372064	chr4_82895237_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6813-3p	82895235	82895241	7mer-m8	82895234	82895254	140	-10.68
CAediting_372067	chr4_82895260_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4743-5p	82895256	82895263	8mer-1a	82895256	82895282	148	-30.14
CAediting_372068	chr4_82895267_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4329	82895266	82895273	8mer-1a	82895266	82895282	148	-15.55
CAediting_372070	chr4_82895277_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6849-3p	82895273	82895279	7mer-m8	82895272	82895292	156	-22.23
CAediting_372072	chr4_82895301_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4757-5p	82895298	82895305	8mer-1a	82895298	82895320	142	-15.18
CAediting_372072	chr4_82895301_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6744-3p	82895298	82895305	8mer-1a	82895298	82895321	147	-16.99
CAediting_372072	chr4_82895301_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6878-3p	82895298	82895304	7mer-m8	82895297	82895317	157	-16.24
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-204-3p	82895361	82895367	7mer-m8	82895360	82895380	145	-20.07
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-3192-5p	82895361	82895366	6mer	82895360	82895384	144	-27.31
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4646-5p	82895361	82895367	7mer-m8	82895360	82895381	153	-20.9
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6765-3p	82895358	82895364	7mer-m8	82895357	82895381	152	-27.04
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6852-5p	82895360	82895365	6mer	82895359	82895378	141	-23.47
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-7851-3p	82895359	82895365	7mer-m8	82895358	82895378	162	-28.05
CAediting_372075	chr4_82895335_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-10400-5p	82895332	82895338	7mer-1a	82895332	82895353	149	-30.07
CAediting_372075	chr4_82895335_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4304	82895335	82895341	7mer-m8	82895334	82895350	143	-16.12
CAediting_372075	chr4_82895335_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6770-3p	82895332	82895338	7mer-m8	82895331	82895352	161	-25.2
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-518a-3p	82893329	82893335	7mer-m8	82893328	82893349	140	-12.84
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-518b	82893329	82893335	7mer-m8	82893328	82893350	141	-18.36
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-518c-3p	82893329	82893335	7mer-m8	82893328	82893351	141	-15.7
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-518d-3p	82893329	82893335	7mer-m8	82893328	82893348	140	-15.27
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-518f-3p	82893329	82893335	7mer-m8	82893328	82893349	141	-14.05
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-526a-3p	82893329	82893335	7mer-m8	82893328	82893350	141	-14.28
CAediting_372063	chr4_82895212_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6770-3p	82895209	82895215	7mer-m8	82895208	82895229	154	-18.77

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_372082	chr4_82895413_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-3174	82895411	82895416	6mer	82895410	82895432	146	-24.27
CAediting_372084	chr4_82895456_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-3672	82895456	82895462	7mer-m8	82895455	82895481	151	-11.7
CAediting_372065	chr4_82895247_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-3929	82895243	82895249	7mer-m8	82895242	82895264	153	-18.29
CAediting_372061	chr4_82894600_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4252	82894594	82894601	8mer-1a	82894594	82894612	142	-14.14
CAediting_372065	chr4_82895247_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4478	82895243	82895249	7mer-m8	82895242	82895258	147	-19.85
CAediting_372078	chr4_82895361_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-450a-1-3p	82895361	82895367	7mer-m8	82895360	82895381	140	-10.66
CAediting_372076	chr4_82895340_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-4787-3p	82895339	82895345	7mer-m8	82895338	82895359	150	-21.38
CAediting_372065	chr4_82895247_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-485-5p	82895242	82895248	7mer-m8	82895241	82895262	149	-16.53
CAediting_372074	chr4_82895326_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-5589-5p	82895324	82895330	7mer-m8	82895323	82895341	151	-20.45
CAediting_372067	chr4_82895260_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6079	82895260	82895265	6mer	82895259	82895284	144	-24.39
CAediting_372066	chr4_82895253_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6086	82895247	82895254	8mer-1a	82895247	82895267	149	-21.42
CAediting_372074	chr4_82895326_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6776-5p	82895325	82895331	7mer-m8	82895324	82895342	154	-21.51
CAediting_372067	chr4_82895260_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6842-3p	82895256	82895262	7mer-m8	82895255	82895276	140	-15.71
CAediting_372072	chr4_82895301_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6843-3p	82895298	82895304	7mer-m8	82895297	82895316	143	-14.83
CAediting_372073	chr4_82895303_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6843-3p	82895298	82895304	7mer-m8	82895297	82895316	143	-14.83
CAediting_372072	chr4_82895301_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6848-3p	82895298	82895304	7mer-m8	82895297	82895315	145	-14.16
CAediting_372073	chr4_82895303_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6848-3p	82895298	82895304	7mer-m8	82895297	82895315	145	-14.16
CAediting_372084	chr4_82895456_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-6864-3p	82895456	82895462	7mer-m8	82895455	82895476	141	-12.88
CAediting_372084	chr4_82895456_-	ENSG00000251022.5	ENST00000504792.5	hsa-miR-759	82895451	82895457	7mer-m8	82895450	82895470	143	-12.38
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-106a-5p	82893329	82893335	7mer-m8	82893328	82893350	149	-14.66
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-106b-5p	82893329	82893335	7mer-m8	82893328	82893348	147	-10.64
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-17-5p	82893329	82893335	7mer-m8	82893328	82893350	149	-18.9
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-20a-5p	82893329	82893335	7mer-m8	82893328	82893354	153	-18.51
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-20b-5p	82893329	82893335	7mer-m8	82893328	82893350	149	-18.9
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-301a-3p	82893331	82893337	7mer-m8	82893330	82893353	154	-9.38
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-4295	82893331	82893337	7mer-m8	82893330	82893347	149	-7.57
CAediting_372061	chr4_82894600_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-4322	82894600	82894606	7mer-m8	82894599	82894619	145	-20.87
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-519a-3p	82893330	82893336	7mer-m8	82893329	82893351	144	-11.36
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-519b-3p	82893330	82893336	7mer-m8	82893329	82893349	146	-14.81
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-519c-3p	82893330	82893336	7mer-m8	82893329	82893349	146	-15.04
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-519d-3p	82893329	82893335	7mer-m8	82893328	82893350	141	-12.7
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-520g-3p	82893328	82893334	7mer-m8	82893327	82893351	146	-12.74
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-520h	82893328	82893334	7mer-m8	82893327	82893349	146	-12.74
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-526b-3p	82893329	82893335	7mer-m8	82893328	82893350	141	-13.89
CAediting_372060	chr4_82893333_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-93-5p	82893329	82893335	7mer-m8	82893328	82893350	145	-18.9

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229415	chr17_67471547_+	ENSG00000251022.5	ENST00000504792.5	hsa-miR-548aa	82894303	82894310	8mer-1a	82894303	82894332	153	-14.48
CAediting_86358	chr1_109598906_+	ENSG00000251022.5	ENST00000504792.5	hsa-miR-197-5p	82893977	82893983	7mer-m8	82893976	82893997	145	-21.43
CAediting_1229415	chr17_67471547_+	ENSG00000251022.5	ENST00000512932.4	hsa-miR-548aa	82894303	82894310	8mer-1a	82894303	82894332	153	-14.48
CAediting_1054808	chr15_66496985_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-4512	82900781	82900787	7mer-1a	82900781	82900801	148	-25.38
CAediting_1229415	chr17_67471547_+	ENSG00000251022.5	ENST00000504520.5	hsa-miR-548aa	82894303	82894310	8mer-1a	82894303	82894332	153	-14.48
CAediting_86358	chr1_109598906_+	ENSG00000251022.5	ENST00000504520.5	hsa-miR-197-5p	82893977	82893983	7mer-m8	82893976	82893997	145	-21.43
CAediting_442554	chr5_154685830_+	ENSG00000251022.5	ENST00000504520.5	hsa-miR-1303	82893014	82893021	8mer-1a	82893014	82893032	143	-14.12

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_228905	chr2_188297554_+	ENSG00000251022.5	ENST00000504792.5	hsa-miR-561-3p	82894444	82894451	8mer-1a	82894444	82894466	144	-7.19
CAediting_228905	chr2_188297554_+	ENSG00000251022.5	ENST00000504792.5	hsa-miR-561-3p	82893723	82893729	7mer-m8	82893722	82893748	151	-6.1
CAediting_1351755	chr19_40282625_-	ENSG00000251022.5	ENST00000503704.1	hsa-miR-641	82899954	82899961	8mer-1a	82899954	82899977	146	-10.32
CAediting_1306324	chr19_13836464_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-27a-3p	82893134	82893139	6mer	82893133	82893155	141	-20.18
CAediting_1054808	chr15_66496985_-	ENSG00000251022.5	ENST00000504520.5	hsa-miR-4512	82900645	82900651	7mer-m8	82900644	82900665	140	-18.38
CAediting_228905	chr2_188297554_+	ENSG00000251022.5	ENST00000504520.5	hsa-miR-561-3p	82894444	82894451	8mer-1a	82894444	82894466	144	-7.19
CAediting_228905	chr2_188297554_+	ENSG00000251022.5	ENST00000504520.5	hsa-miR-561-3p	82893723	82893729	7mer-m8	82893722	82893748	151	-6.1

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for THAP9-AS1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000504520.5	antisense
ENST00000504792.5	antisense
ENST00000512932.4	antisense

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_372060	ENST00000504520.5	chr4_82893333_-	-783.20	-780.90	-783.20
CAediting_372061	ENST00000504520.5	chr4_82894600_-	-780.90	-780.90	-783.20
CAediting_372061	ENST00000504792.5	chr4_82894600_-	-635.80	-635.70	-657.00
CAediting_372062	ENST00000504792.5	chr4_82895209_-	-635.70	-635.70	-657.00
CAediting_372063	ENST00000504792.5	chr4_82895212_-	-635.40	-635.70	-657.00
CAediting_372064	ENST00000504792.5	chr4_82895237_-	-636.50	-635.70	-657.00
CAediting_372065	ENST00000504792.5	chr4_82895247_-	-636.60	-635.70	-657.00
CAediting_372066	ENST00000504792.5	chr4_82895253_-	-635.00	-635.70	-657.00
CAediting_372067	ENST00000504792.5	chr4_82895260_-	-636.40	-635.70	-657.00
CAediting_372068	ENST00000504792.5	chr4_82895267_-	-635.70	-635.70	-657.00
CAediting_372069	ENST00000504792.5	chr4_82895268_-	-635.60	-635.70	-657.00
CAediting_372070	ENST00000504792.5	chr4_82895277_-	-635.20	-635.70	-657.00
CAediting_372071	ENST00000504792.5	chr4_82895288_-	-635.30	-635.70	-657.00
CAediting_372072	ENST00000504792.5	chr4_82895301_-	-635.10	-635.70	-657.00
CAediting_372073	ENST00000504792.5	chr4_82895303_-	-634.80	-635.70	-657.00
CAediting_372074	ENST00000504792.5	chr4_82895326_-	-635.00	-635.70	-657.00
CAediting_372075	ENST00000504792.5	chr4_82895335_-	-636.20	-635.70	-657.00
CAediting_372076	ENST00000504792.5	chr4_82895340_-	-635.70	-635.70	-657.00
CAediting_372077	ENST00000504792.5	chr4_82895348_-	-640.50	-635.70	-657.00
CAediting_372078	ENST00000504792.5	chr4_82895361_-	-636.20	-635.70	-657.00
CAediting_372079	ENST00000504792.5	chr4_82895384_-	-635.70	-635.70	-657.00
CAediting_372080	ENST00000504792.5	chr4_82895386_-	-636.10	-635.70	-657.00
CAediting_372081	ENST00000504792.5	chr4_82895408_-	-635.00	-635.70	-657.00
CAediting_372082	ENST00000504792.5	chr4_82895413_-	-641.10	-635.70	-657.00
CAediting_372083	ENST00000504792.5	chr4_82895432_-	-635.50	-635.70	-657.00
CAediting_372084	ENST00000504792.5	chr4_82895456_-	-636.00	-635.70	-657.00
CAediting_372061	ENST00000512932.4	chr4_82894600_-	-248.10	-248.10	-248.10

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Relation with ADAR for THAP9-AS1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LUAD	CAediting_372104	chr4_82896382_-	.	.	.	.	0.0121000217001963	0.339207745237194
LUAD	CAediting_372130	chr4_82896587_-	0.0407601340249059	0.254513158448249	.	.	.	.
BLCA	CAediting_372139	chr4_82896647_-	0.0193725587760914	0.301161086948523	.	.	.	.
BRCA	CAediting_372139	chr4_82896647_-	2.00443509827202e-12	0.352241152222348	.	.	.	.
CESC	CAediting_372139	chr4_82896647_-	8.5264117567615e-06	0.488995634857059	.	.	0.0334323177996337	0.245933023204254
LUAD	CAediting_372139	chr4_82896647_-	0.000437965149287856	0.240497275374162	.	.	.	.
LUSC	CAediting_372139	chr4_82896647_-	0.000681464853475253	0.261812795082774	.	.	.	.
STAD	CAediting_372139	chr4_82896647_-	0.020903003003988	0.210681484891393	.	.	.	.
THCA	CAediting_372139	chr4_82896647_-	3.18233226757391e-07	0.417427861812914	.	.	.	.
KIRP	CAediting_372139	chr4_82896647_-	2.70416051438045e-06	0.563937445203267	.	.	.	.
PAAD	CAediting_372139	chr4_82896647_-	0.000159357828488386	0.454855662961838	.	.	.	.
SKCM	CAediting_372139	chr4_82896647_-	0.000999954033681629	0.334057430073949	.	.	.	.

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Relation with cancer stages for THAP9-AS1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_372130	chr4_82896587_-	0.0425362573400519	0.178874267697699
ESCA	clinical_stage	CAediting_372104	chr4_82896382_-	0.0225642992002146	-0.582937496194566
KIRC	pathologic_stage	CAediting_372104	chr4_82896382_-	0.00275651509605494	0.3525922079198
KIRC	pathologic_stage	CAediting_372139	chr4_82896647_-	0.0085854768384865	0.191687907366602
KIRP	pathologic_stage	CAediting_372139	chr4_82896647_-	0.0238819318718514	0.310004786344794
PAAD	pathologic_stage	CAediting_372139	chr4_82896647_-	0.0102016987141975	0.318965903014946
THCA	pathologic_stage	CAediting_372139	chr4_82896647_-	0.00103457168813763	0.277332328605867

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Relation with survival for THAP9-AS1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for THAP9-AS1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for THAP9-AS1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene