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Editing gene: CYP4F23P (CAeditome ID:100422238)

Gene summary for CYP4F23P

Gene summary

Gene information	Gene symbol	CYP4F23P
	Gene ID	100422238
	Gene name	cytochrome P450 family 4 subfamily F member 23, pseudogene
	Synonyms	-
	Cytomap	19p13.12
	Type of gene	pseudo
	Description	cytochrome P450, family 4, subfamily F, polypeptide 23, pseudogenecytochrome P450, family 4, subfamily F, polypeptide 3 pseudogene
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for CYP4F23P

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000269516.5

RNA A-to-I editing events in Cancer.

CAediting_1310567(15565664, +), CAediting_1310568(15565712, +), CAediting_1310569(15565726, +), CAediting_1310570(15565727, +), CAediting_1310571(15565739, +), CAediting_1310572(15568634, +), CAediting_1310573(15568642, +), CAediting_1310574(15568672, +), CAediting_1310575(15568674, +), CAediting_1310576(15568675, +), CAediting_1310577(15568715, +), CAediting_1310578(15568727, +), CAediting_1310579(15568730, +), CAediting_1310580(15572989, +), CAediting_1310581(15573027, +), CAediting_1310582(15573030, +), CAediting_1310583(15573040, +), CAediting_1310584(15573046, +), CAediting_1310585(15573085, +), CAediting_1310586(15573095, +), CAediting_1310587(15573097, +), CAediting_1310588(15573132, +), CAediting_1310589(15573139, +), CAediting_1310590(15573142, +), CAediting_1310591(15573156, +), CAediting_1310592(15573168, +), CAediting_1310593(15573193, +), CAediting_1310594(15573197, +), CAediting_1310595(15573206, +), CAediting_1310596(15573211, +), CAediting_1310597(15573220, +), CAediting_1310598(15573221, +), CAediting_1310599(15574193, +), CAediting_1310600(15574228, +), CAediting_1310601(15574242, +), CAediting_1310602(15574265, +), CAediting_1310603(15574272, +), CAediting_1310604(15574278, +), CAediting_1310605(15574308, +), CAediting_1310606(15574326, +), CAediting_1310607(15574327, +), CAediting_1310608(15574332, +), CAediting_1310609(15574336, +), CAediting_1310610(15574349, +), CAediting_1310611(15574359, +), CAediting_1310612(15574379, +), CAediting_1310613(15574380, +), CAediting_1310614(15574392, +), CAediting_1310615(15574393, +), CAediting_1310616(15574397, +), CAediting_1310617(15574399, +), CAediting_1310618(15574407, +), CAediting_1310619(15575176, +), CAediting_1310620(15575201, +), CAediting_1310621(15575202, +), CAediting_1310622(15575231, +), CAediting_1310623(15575241, +), CAediting_1310624(15575243, +), CAediting_1310625(15575276, +), CAediting_1310626(15575302, +), CAediting_1310627(15575312, +), CAediting_1310628(15575314, +), CAediting_1310629(15575322, +), CAediting_1310630(15575323, +), CAediting_1310631(15575360, +), CAediting_1310632(15575361, +), CAediting_1310633(15575373, +),

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RNA editing positional annotations for CYP4F23P using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1310567	chr19_15565664_+	ncRNA_intronic
CAediting_1310568	chr19_15565712_+	ncRNA_intronic
CAediting_1310569	chr19_15565726_+	ncRNA_intronic
CAediting_1310570	chr19_15565727_+	ncRNA_intronic
CAediting_1310571	chr19_15565739_+	ncRNA_intronic
CAediting_1310572	chr19_15568634_+	ncRNA_intronic
CAediting_1310573	chr19_15568642_+	ncRNA_intronic
CAediting_1310574	chr19_15568672_+	ncRNA_intronic
CAediting_1310575	chr19_15568674_+	ncRNA_intronic
CAediting_1310576	chr19_15568675_+	ncRNA_intronic
CAediting_1310577	chr19_15568715_+	ncRNA_intronic
CAediting_1310578	chr19_15568727_+	ncRNA_intronic
CAediting_1310579	chr19_15568730_+	ncRNA_intronic
CAediting_1310580	chr19_15572989_+	ncRNA_intronic
CAediting_1310581	chr19_15573027_+	ncRNA_intronic
CAediting_1310582	chr19_15573030_+	ncRNA_intronic
CAediting_1310583	chr19_15573040_+	ncRNA_intronic
CAediting_1310584	chr19_15573046_+	ncRNA_intronic
CAediting_1310585	chr19_15573085_+	ncRNA_intronic
CAediting_1310586	chr19_15573095_+	ncRNA_intronic
CAediting_1310587	chr19_15573097_+	ncRNA_intronic
CAediting_1310588	chr19_15573132_+	ncRNA_intronic
CAediting_1310589	chr19_15573139_+	ncRNA_intronic
CAediting_1310590	chr19_15573142_+	ncRNA_intronic
CAediting_1310591	chr19_15573156_+	ncRNA_intronic
CAediting_1310592	chr19_15573168_+	ncRNA_intronic
CAediting_1310593	chr19_15573193_+	ncRNA_intronic
CAediting_1310594	chr19_15573197_+	ncRNA_intronic
CAediting_1310595	chr19_15573206_+	ncRNA_intronic
CAediting_1310596	chr19_15573211_+	ncRNA_intronic
CAediting_1310597	chr19_15573220_+	ncRNA_intronic
CAediting_1310598	chr19_15573221_+	ncRNA_intronic
CAediting_1310599	chr19_15574193_+	ncRNA_intronic
CAediting_1310600	chr19_15574228_+	ncRNA_intronic
CAediting_1310601	chr19_15574242_+	ncRNA_intronic
CAediting_1310602	chr19_15574265_+	ncRNA_intronic
CAediting_1310603	chr19_15574272_+	ncRNA_intronic
CAediting_1310604	chr19_15574278_+	ncRNA_intronic
CAediting_1310605	chr19_15574308_+	ncRNA_intronic
CAediting_1310606	chr19_15574326_+	ncRNA_intronic
CAediting_1310607	chr19_15574327_+	ncRNA_intronic
CAediting_1310608	chr19_15574332_+	ncRNA_intronic
CAediting_1310609	chr19_15574336_+	ncRNA_intronic
CAediting_1310610	chr19_15574349_+	ncRNA_intronic
CAediting_1310611	chr19_15574359_+	ncRNA_intronic
CAediting_1310612	chr19_15574379_+	ncRNA_intronic
CAediting_1310613	chr19_15574380_+	ncRNA_intronic
CAediting_1310614	chr19_15574392_+	ncRNA_intronic
CAediting_1310615	chr19_15574393_+	ncRNA_intronic
CAediting_1310616	chr19_15574397_+	ncRNA_intronic
CAediting_1310617	chr19_15574399_+	ncRNA_intronic
CAediting_1310618	chr19_15574407_+	ncRNA_intronic
CAediting_1310619	chr19_15575176_+	ncRNA_intronic
CAediting_1310620	chr19_15575201_+	ncRNA_intronic
CAediting_1310621	chr19_15575202_+	ncRNA_intronic
CAediting_1310622	chr19_15575231_+	ncRNA_intronic
CAediting_1310623	chr19_15575241_+	ncRNA_intronic
CAediting_1310624	chr19_15575243_+	ncRNA_intronic
CAediting_1310625	chr19_15575276_+	ncRNA_intronic
CAediting_1310626	chr19_15575302_+	ncRNA_intronic
CAediting_1310627	chr19_15575312_+	ncRNA_intronic
CAediting_1310628	chr19_15575314_+	ncRNA_intronic
CAediting_1310629	chr19_15575322_+	ncRNA_intronic
CAediting_1310630	chr19_15575323_+	ncRNA_intronic
CAediting_1310631	chr19_15575360_+	ncRNA_intronic
CAediting_1310632	chr19_15575361_+	ncRNA_intronic
CAediting_1310633	chr19_15575373_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1310567	chr19_15565664_+	SINE	Alu	AluSx1
CAediting_1310568	chr19_15565712_+	SINE	Alu	AluSx1
CAediting_1310569	chr19_15565726_+	SINE	Alu	AluSx1
CAediting_1310570	chr19_15565727_+	SINE	Alu	AluSx1
CAediting_1310571	chr19_15565739_+	SINE	Alu	AluSx1
CAediting_1310572	chr19_15568634_+	SINE	Alu	AluSq2
CAediting_1310573	chr19_15568642_+	SINE	Alu	AluSq2
CAediting_1310574	chr19_15568672_+	SINE	Alu	AluSq2
CAediting_1310575	chr19_15568674_+	SINE	Alu	AluSq2
CAediting_1310576	chr19_15568675_+	SINE	Alu	AluSq2
CAediting_1310577	chr19_15568715_+	SINE	Alu	AluSq2
CAediting_1310578	chr19_15568727_+	SINE	Alu	AluSq2
CAediting_1310579	chr19_15568730_+	SINE	Alu	AluSq2
CAediting_1310580	chr19_15572989_+	SINE	Alu	AluSx1
CAediting_1310581	chr19_15573027_+	SINE	Alu	AluSx1
CAediting_1310582	chr19_15573030_+	SINE	Alu	AluSx1
CAediting_1310583	chr19_15573040_+	SINE	Alu	AluSx1
CAediting_1310584	chr19_15573046_+	SINE	Alu	AluSx1
CAediting_1310585	chr19_15573085_+	SINE	Alu	AluSx1
CAediting_1310586	chr19_15573095_+	SINE	Alu	AluSx1
CAediting_1310587	chr19_15573097_+	SINE	Alu	AluSx1
CAediting_1310588	chr19_15573132_+	SINE	Alu	AluSx1
CAediting_1310589	chr19_15573139_+	SINE	Alu	AluSx1
CAediting_1310590	chr19_15573142_+	SINE	Alu	AluSx1
CAediting_1310591	chr19_15573156_+	SINE	Alu	AluSx1
CAediting_1310592	chr19_15573168_+	SINE	Alu	AluSx1
CAediting_1310593	chr19_15573193_+	SINE	Alu	AluSx1
CAediting_1310594	chr19_15573197_+	SINE	Alu	AluSx1
CAediting_1310595	chr19_15573206_+	SINE	Alu	AluSx1
CAediting_1310596	chr19_15573211_+	SINE	Alu	AluSx1
CAediting_1310597	chr19_15573220_+	SINE	Alu	AluSx1
CAediting_1310598	chr19_15573221_+	SINE	Alu	AluSx1
CAediting_1310599	chr19_15574193_+	SINE	Alu	AluSz
CAediting_1310600	chr19_15574228_+	SINE	Alu	AluSz
CAediting_1310601	chr19_15574242_+	SINE	Alu	AluSz
CAediting_1310602	chr19_15574265_+	SINE	Alu	AluSz
CAediting_1310603	chr19_15574272_+	SINE	Alu	AluSz
CAediting_1310604	chr19_15574278_+	SINE	Alu	AluSz
CAediting_1310605	chr19_15574308_+	SINE	Alu	AluSz
CAediting_1310606	chr19_15574326_+	SINE	Alu	AluSz
CAediting_1310607	chr19_15574327_+	SINE	Alu	AluSz
CAediting_1310608	chr19_15574332_+	SINE	Alu	AluSz
CAediting_1310609	chr19_15574336_+	SINE	Alu	AluSz
CAediting_1310610	chr19_15574349_+	SINE	Alu	AluSz
CAediting_1310611	chr19_15574359_+	SINE	Alu	AluSz
CAediting_1310612	chr19_15574379_+	SINE	Alu	AluSz
CAediting_1310613	chr19_15574380_+	SINE	Alu	AluSz
CAediting_1310614	chr19_15574392_+	SINE	Alu	AluSz
CAediting_1310615	chr19_15574393_+	SINE	Alu	AluSz
CAediting_1310616	chr19_15574397_+	SINE	Alu	AluSz
CAediting_1310617	chr19_15574399_+	SINE	Alu	AluSz
CAediting_1310618	chr19_15574407_+	SINE	Alu	AluSz
CAediting_1310619	chr19_15575176_+	SINE	Alu	AluSc5
CAediting_1310620	chr19_15575201_+	SINE	Alu	AluSc5
CAediting_1310621	chr19_15575202_+	SINE	Alu	AluSc5
CAediting_1310622	chr19_15575231_+	SINE	Alu	AluSc5
CAediting_1310623	chr19_15575241_+	SINE	Alu	AluSc5
CAediting_1310624	chr19_15575243_+	SINE	Alu	AluSc5
CAediting_1310625	chr19_15575276_+	SINE	Alu	AluSc5
CAediting_1310626	chr19_15575302_+	SINE	Alu	AluSc5
CAediting_1310627	chr19_15575312_+	SINE	Alu	AluSc5
CAediting_1310628	chr19_15575314_+	SINE	Alu	AluSc5
CAediting_1310629	chr19_15575322_+	SINE	Alu	AluSc5
CAediting_1310630	chr19_15575323_+	SINE	Alu	AluSc5
CAediting_1310631	chr19_15575360_+	SINE	Alu	AluSc5
CAediting_1310632	chr19_15575361_+	SINE	Alu	AluSc5
CAediting_1310633	chr19_15575373_+	SINE	Alu	AluSc5

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RNA A-to-I editing events in the alternative splicing sites for CYP4F23P

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000269516.5.CYP4F23P.

Correlation between RNA A-to-I editing and PSI for ENSG00000269516.5.CYP4F23P.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CYP4F23P

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CYP4F23P

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CYP4F23P

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CYP4F23P

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CYP4F23P

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CYP4F23P

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CYP4F23P

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CYP4F23P

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CYP4F23P

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene