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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: HCN4 (CAeditome ID:10021) |
Gene summary for HCN4 |
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Gene information | Gene symbol | HCN4 | Gene ID | 10021 |
Gene name | hyperpolarization activated cyclic nucleotide gated potassium channel 4 | |
Synonyms | SSS2 | |
Cytomap | 15q24.1 | |
Type of gene | protein-coding | |
Description | potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4hyperpolarization activated cyclic nucleotide-gated cation channel 4 | |
Modification date | 20210518 | |
UniProtAcc | Q9Y3Q4 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
HCN4 | GO:0005222 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 10228147 |
HCN4 | GO:0005222 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0005222 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
HCN4 | GO:0005249 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
HCN4 | GO:0003254 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0006812 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0071320 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0071320 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
HCN4 | GO:0071320 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 22748890 |
HCN4 | GO:0071321 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 22748890 |
HCN4 | GO:0071805 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
HCN4 | GO:0098719 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 10228147 |
HCN4 | GO:1990573 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 10228147 |
HCN4 | GO:0005886 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0005886 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 22748890 |
HCN4 | GO:0031226 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
HCN4 | GO:0048471 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 12750403 |
HCN4 | GO:0098855 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 10228147 |
HCN4 | GO:0098855 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | 16407510 |
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RNA A-to-I events for HCN4 |
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CAediting_1059749(73321385, -), CAediting_1059750(73321396, -), CAediting_1059751(73321512, -), |
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RNA editing positional annotations for HCN4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1059749 | chr15_73321385_- | UTR3 |
CAediting_1059750 | chr15_73321396_- | UTR3 |
CAediting_1059751 | chr15_73321512_- | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1059749 | chr15_73321385_- | SINE | MIR | MIRb |
CAediting_1059750 | chr15_73321396_- | SINE | MIR | MIRb |
CAediting_1059751 | chr15_73321512_- | SINE | MIR | MIRb |
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RNA A-to-I editing events in the alternative splicing sites for HCN4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HCN4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for HCN4 |
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The effects of the RNA editing to the miRNA binding sites for HCN4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1059749 | chr15_73321385_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-221-3p | 73321384 | 73321390 | 7mer-m8 | 73321383 | 73321403 | 151.00 | -18.70 |
CAediting_1059749 | chr15_73321385_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-222-3p | 73321384 | 73321390 | 7mer-m8 | 73321383 | 73321400 | 147.00 | -17.64 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-1271-3p | 73321508 | 73321514 | 7mer-m8 | 73321507 | 73321528 | 156.00 | -23.41 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-221-5p | 73321511 | 73321517 | 7mer-m8 | 73321510 | 73321529 | 157.00 | -23.73 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-3116 | 73321509 | 73321515 | 7mer-1a | 73321509 | 73321530 | 142.00 | -26.17 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-3116 | 73321509 | 73321515 | 7mer-1a | 73321509 | 73321530 | 142.00 | -26.17 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-33b-3p | 73321507 | 73321513 | 7mer-m8 | 73321506 | 73321528 | 166.00 | -28.43 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-515-3p | 73321507 | 73321513 | 7mer-m8 | 73321506 | 73321526 | 146.00 | -17.49 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-515-3p | 73321507 | 73321513 | 7mer-m8 | 73321506 | 73321526 | 146.00 | -17.49 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-519e-3p | 73321507 | 73321513 | 7mer-m8 | 73321506 | 73321526 | 146.00 | -17.75 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-550a-3-5p | 73321508 | 73321514 | 7mer-m8 | 73321507 | 73321528 | 151.00 | -21.64 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-550a-5p | 73321508 | 73321514 | 7mer-m8 | 73321507 | 73321530 | 152.00 | -22.62 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-550a-5p | 73321508 | 73321514 | 7mer-m8 | 73321507 | 73321530 | 152.00 | -22.62 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-5588-5p | 73321512 | 73321517 | 6mer | 73321511 | 73321531 | 140.00 | -19.15 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-8073 | 73321511 | 73321517 | 7mer-m8 | 73321510 | 73321531 | 157.00 | -24.46 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-12133 | 73321512 | 73321518 | 7mer-m8 | 73321511 | 73321539 | 142 | -15.99 |
CAediting_1059750 | chr15_73321396_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-1299 | 73321393 | 73321400 | 8mer-1a | 73321393 | 73321414 | 140 | -11.83 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-520f-3p | 73321507 | 73321513 | 7mer-m8 | 73321506 | 73321526 | 144 | -15.36 |
CAediting_1059751 | chr15_73321512_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-636 | 73321508 | 73321514 | 7mer-m8 | 73321507 | 73321529 | 140 | -12.68 |
CAediting_1059750 | chr15_73321396_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-875-3p | 73321394 | 73321401 | 8mer-1a | 73321394 | 73321418 | 146 | -16.42 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000138622.3 | ENST00000261917 | hsa-miR-4477b | 73320891 | 73320897 | 7mer-m8 | 73320890 | 73320911 | 140 | -11.31 |
CAediting_1054808 | chr15_66496985_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-4512 | 73321692 | 73321698 | 7mer-m8 | 73321691 | 73321711 | 144 | -20.44 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000138622.3 | ENST00000261917 | hsa-miR-548aa | 73321501 | 73321507 | 7mer-m8 | 73321500 | 73321520 | 145 | -12.57 |
CAediting_396018 | chr5_1062918_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-4635 | 73321603 | 73321609 | 7mer-m8 | 73321602 | 73321622 | 146 | -15.51 |
CAediting_524911 | chr7_5495852_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-589-3p | 73321518 | 73321524 | 7mer-m8 | 73321517 | 73321540 | 145 | -18.14 |
CAediting_573001 | chr7_92204086_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-1285-5p | 73320385 | 73320392 | 8mer-1a | 73320385 | 73320405 | 143 | -24.66 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1306324 | chr19_13836464_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-27a-3p | 73322412 | 73322418 | 7mer-m8 | 73322411 | 73322428 | 141 | -10.42 |
CAediting_468389 | chr6_31355314_- | ENSG00000138622.3 | ENST00000261917 | hsa-miR-6891-5p | 73321334 | 73321340 | 7mer-m8 | 73321333 | 73321353 | 143 | -23.01 |
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The effects of the RNA editing to the stability of the RNA structures for HCN4 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for HCN4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
PCPG | CAediting_1059750 | chr15_73321396_- | 0.0414429595726195 | 0.253684222087258 | . | . | . | . |
TGCT | CAediting_1059750 | chr15_73321396_- | 0.00241666240315361 | 0.362022687556815 | . | . | . | . |
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Relation with cancer stages for HCN4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for HCN4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for HCN4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HCN4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
HCN4 | C1834144 | Sick Sinus Syndrome 2, Autosomal Dominant | 7 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
HCN4 | C0264893 | Nodal rhythm disorder | 4 | CLINGEN |
HCN4 | C0348626 | Other specified cardiac arrhythmias | 4 | CLINGEN |
HCN4 | C0428908 | Sinus Node Dysfunction (disorder) | 4 | CLINGEN |
HCN4 | C1142166 | Brugada Syndrome (disorder) | 4 | CLINGEN |
HCN4 | C1399226 | Ectopic rhythm | 4 | CLINGEN |
HCN4 | C2748542 | CARDIAC CONDUCTION DEFECT, NONSPECIFIC (disorder) | 4 | CLINGEN |
HCN4 | C4551804 | Brugada Syndrome 1 | 4 | CLINGEN |
HCN4 | C2751083 | Brugada Syndrome 8 | 3 | CTD_human;GENOMICS_ENGLAND |
HCN4 | C0004238 | Atrial Fibrillation | 2 | CTD_human |
HCN4 | C0235480 | Paroxysmal atrial fibrillation | 2 | CTD_human |
HCN4 | C2585653 | Persistent atrial fibrillation | 2 | CTD_human |
HCN4 | C3468561 | familial atrial fibrillation | 2 | CTD_human |
HCN4 | C4707243 | Familial thoracic aortic aneurysm and aortic dissection | 2 | CLINGEN;GENOMICS_ENGLAND |
HCN4 | C0525045 | Mood Disorders | 1 | PSYGENET |