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Editing gene: PDCD6 (CAeditome ID:10016)

Gene summary for PDCD6

Gene summary

Gene information	Gene symbol	PDCD6
	Gene ID	10016
	Gene name	programmed cell death 6
	Synonyms	ALG-2\|ALG2\|PEF1B
	Cytomap	5p15.33
	Type of gene	protein-coding
	Description	programmed cell death protein 6apoptosis-linked gene 2 protein homologprobable calcium-binding protein ALG-2
	Modification date	20210518
	UniProtAcc	O75340
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PDCD6	GO:0005509	Programmed cell death protein 6	25667979
PDCD6	GO:0042803	Programmed cell death protein 6	25667979
PDCD6	GO:0001938	Programmed cell death protein 6	21893193
PDCD6	GO:0006886	Programmed cell death protein 6	21122810
PDCD6	GO:0010595	Programmed cell death protein 6	21893193
PDCD6	GO:0030948	Programmed cell death protein 6	21893193
PDCD6	GO:0032007	Programmed cell death protein 6	21893193
PDCD6	GO:0034605	Programmed cell death protein 6	21122810
PDCD6	GO:0036324	Programmed cell death protein 6	21893193
PDCD6	GO:0043280	Programmed cell death protein 6	16132846
PDCD6	GO:0045766	Programmed cell death protein 6	21893193
PDCD6	GO:0051898	Programmed cell death protein 6	21893193
PDCD6	GO:0005634	Programmed cell death protein 6	16957052
PDCD6	GO:0005634	Programmed cell death protein 6	17196169
PDCD6	GO:0005634	Programmed cell death protein 6	21122810
PDCD6	GO:0005634	Programmed cell death protein 6	27784779
PDCD6	GO:0005654	Programmed cell death protein 6	0000052
PDCD6	GO:0005737	Programmed cell death protein 6	21122810
PDCD6	GO:0005737	Programmed cell death protein 6	27784779
PDCD6	GO:0005783	Programmed cell death protein 6	17196169
PDCD6	GO:0005829	Programmed cell death protein 6	0000052
PDCD6	GO:0031410	Programmed cell death protein 6	21122810
PDCD6	GO:0070971	Programmed cell death protein 6	27813252
PDCD6	GO:0030127	Programmed cell death protein 6	27716508
PDCD6	GO:0031463	Programmed cell death protein 6	27716508

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RNA A-to-I events for PDCD6

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000249915.6

RNA A-to-I editing events in Cancer.

CAediting_395762(275188, +), CAediting_395763(275211, +), CAediting_395764(276051, +), CAediting_395765(276092, +), CAediting_395766(276108, +), CAediting_395767(276118, +), CAediting_395768(276131, +), CAediting_395769(276138, +), CAediting_395770(276144, +), CAediting_395771(276149, +), CAediting_395772(276184, +), CAediting_395773(276242, +), CAediting_395774(276529, +), CAediting_395775(276536, +), CAediting_395776(277147, +), CAediting_395777(277149, +), CAediting_395778(277162, +), CAediting_395779(277255, +), CAediting_395780(277265, +), CAediting_395781(277431, +), CAediting_395782(277441, +), CAediting_395783(277443, +), CAediting_395784(277483, +), CAediting_395785(277508, +), CAediting_395786(277563, +), CAediting_395787(277575, +), CAediting_395788(277597, +), CAediting_395789(277610, +), CAediting_395790(277616, +), CAediting_395791(277641, +), CAediting_395792(277729, +), CAediting_395793(277730, +), CAediting_395794(277739, +), CAediting_395795(277740, +), CAediting_395796(277751, +), CAediting_395797(277756, +), CAediting_395798(277757, +), CAediting_395799(277758, +), CAediting_395800(277763, +), CAediting_395801(277768, +), CAediting_395802(277776, +), CAediting_395803(277794, +), CAediting_395804(277795, +), CAediting_395805(277800, +), CAediting_395806(277804, +), CAediting_395807(277830, +), CAediting_395808(277835, +), CAediting_395809(277836, +), CAediting_395810(277847, +), CAediting_395811(277867, +), CAediting_395812(277869, +), CAediting_395813(278454, +), CAediting_395814(278455, +), CAediting_395815(278523, +), CAediting_395816(278524, +), CAediting_395817(278549, +), CAediting_395818(278551, +), CAediting_395819(278552, +), CAediting_395820(278555, +), CAediting_395821(278559, +), CAediting_395822(278560, +), CAediting_395823(278566, +), CAediting_395824(278592, +), CAediting_395825(278598, +), CAediting_395826(278602, +), CAediting_395827(278615, +), CAediting_395828(278625, +), CAediting_395829(278633, +), CAediting_395830(278657, +), CAediting_395831(278658, +), CAediting_395832(278659, +), CAediting_395833(278693, +), CAediting_395834(278695, +), CAediting_395835(283927, +), CAediting_395836(283998, +), CAediting_395837(284703, +), CAediting_395838(284715, +), CAediting_395839(284790, +), CAediting_395840(284803, +), CAediting_395841(284809, +), CAediting_395842(284811, +), CAediting_395843(284964, +), CAediting_395844(285028, +), CAediting_395845(285034, +), CAediting_395846(285064, +), CAediting_395847(311715, +), CAediting_395848(311719, +), CAediting_395849(311733, +), CAediting_395850(311737, +), CAediting_395851(311739, +), CAediting_395852(311749, +), CAediting_395853(311768, +), CAediting_395854(311774, +), CAediting_395855(311793, +), CAediting_395856(311794, +), CAediting_395857(311797, +), CAediting_395858(311811, +), CAediting_395859(311820, +), CAediting_395860(311900, +), CAediting_395861(311924, +), CAediting_395862(311963, +), CAediting_395863(312689, +), CAediting_395864(312695, +), CAediting_395865(312699, +), CAediting_395866(312703, +), CAediting_395867(312706, +), CAediting_395868(312712, +), CAediting_395869(312716, +), CAediting_395870(312719, +), CAediting_395871(312721, +), CAediting_395872(312722, +), CAediting_395873(312725, +), CAediting_395874(312730, +), CAediting_395875(312731, +), CAediting_395876(312760, +), CAediting_395877(312765, +), CAediting_395878(312775, +), CAediting_395879(312780, +), CAediting_395880(312792, +), CAediting_395881(312798, +), CAediting_395882(313494, +), CAediting_395883(313503, +), CAediting_395884(313508, +), CAediting_395885(313515, +), CAediting_395886(313527, +), CAediting_395887(313531, +), CAediting_395888(313554, +), CAediting_395889(313560, +), CAediting_395890(313561, +), CAediting_395891(313590, +), CAediting_395892(313607, +), CAediting_395893(313616, +), CAediting_395894(313697, +), CAediting_395895(313699, +), CAediting_395896(313701, +), CAediting_395897(313715, +), CAediting_395898(313719, +), CAediting_395899(313724, +), CAediting_395900(313726, +), CAediting_395901(313740, +), CAediting_395902(313741, +), CAediting_395903(313743, +), CAediting_395904(313750, +), CAediting_395905(313755, +), CAediting_395906(313762, +), CAediting_395907(313768, +), CAediting_395908(313774, +), CAediting_395909(313775, +), CAediting_395910(313785, +), CAediting_395911(313801, +), CAediting_395912(313802, +), CAediting_395913(324083, +),

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RNA editing positional annotations for PDCD6 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_395762	chr5_275188_+	ncRNA_intronic
CAediting_395763	chr5_275211_+	ncRNA_intronic
CAediting_395764	chr5_276051_+	ncRNA_intronic
CAediting_395765	chr5_276092_+	ncRNA_intronic
CAediting_395766	chr5_276108_+	ncRNA_intronic
CAediting_395767	chr5_276118_+	ncRNA_intronic
CAediting_395768	chr5_276131_+	ncRNA_intronic
CAediting_395769	chr5_276138_+	ncRNA_intronic
CAediting_395770	chr5_276144_+	ncRNA_intronic
CAediting_395771	chr5_276149_+	ncRNA_intronic
CAediting_395772	chr5_276184_+	ncRNA_intronic
CAediting_395773	chr5_276242_+	ncRNA_intronic
CAediting_395774	chr5_276529_+	ncRNA_intronic
CAediting_395775	chr5_276536_+	ncRNA_intronic
CAediting_395776	chr5_277147_+	ncRNA_intronic
CAediting_395777	chr5_277149_+	ncRNA_intronic
CAediting_395778	chr5_277162_+	ncRNA_intronic
CAediting_395779	chr5_277255_+	ncRNA_intronic
CAediting_395780	chr5_277265_+	ncRNA_intronic
CAediting_395781	chr5_277431_+	ncRNA_intronic
CAediting_395782	chr5_277441_+	ncRNA_intronic
CAediting_395783	chr5_277443_+	ncRNA_intronic
CAediting_395784	chr5_277483_+	ncRNA_intronic
CAediting_395785	chr5_277508_+	ncRNA_intronic
CAediting_395786	chr5_277563_+	ncRNA_intronic
CAediting_395787	chr5_277575_+	ncRNA_intronic
CAediting_395788	chr5_277597_+	ncRNA_intronic
CAediting_395789	chr5_277610_+	ncRNA_intronic
CAediting_395790	chr5_277616_+	ncRNA_intronic
CAediting_395791	chr5_277641_+	ncRNA_intronic
CAediting_395792	chr5_277729_+	ncRNA_intronic
CAediting_395793	chr5_277730_+	ncRNA_intronic
CAediting_395794	chr5_277739_+	ncRNA_intronic
CAediting_395795	chr5_277740_+	ncRNA_intronic
CAediting_395796	chr5_277751_+	ncRNA_intronic
CAediting_395797	chr5_277756_+	ncRNA_intronic
CAediting_395798	chr5_277757_+	ncRNA_intronic
CAediting_395799	chr5_277758_+	ncRNA_intronic
CAediting_395800	chr5_277763_+	ncRNA_intronic
CAediting_395801	chr5_277768_+	ncRNA_intronic
CAediting_395802	chr5_277776_+	ncRNA_intronic
CAediting_395803	chr5_277794_+	ncRNA_intronic
CAediting_395804	chr5_277795_+	ncRNA_intronic
CAediting_395805	chr5_277800_+	ncRNA_intronic
CAediting_395806	chr5_277804_+	ncRNA_intronic
CAediting_395807	chr5_277830_+	ncRNA_intronic
CAediting_395808	chr5_277835_+	ncRNA_intronic
CAediting_395809	chr5_277836_+	ncRNA_intronic
CAediting_395810	chr5_277847_+	ncRNA_intronic
CAediting_395811	chr5_277867_+	ncRNA_intronic
CAediting_395812	chr5_277869_+	ncRNA_intronic
CAediting_395813	chr5_278454_+	ncRNA_intronic
CAediting_395814	chr5_278455_+	ncRNA_intronic
CAediting_395815	chr5_278523_+	ncRNA_intronic
CAediting_395816	chr5_278524_+	ncRNA_intronic
CAediting_395817	chr5_278549_+	ncRNA_intronic
CAediting_395818	chr5_278551_+	ncRNA_intronic
CAediting_395819	chr5_278552_+	ncRNA_intronic
CAediting_395820	chr5_278555_+	ncRNA_intronic
CAediting_395821	chr5_278559_+	ncRNA_intronic
CAediting_395822	chr5_278560_+	ncRNA_intronic
CAediting_395823	chr5_278566_+	ncRNA_intronic
CAediting_395824	chr5_278592_+	ncRNA_intronic
CAediting_395825	chr5_278598_+	ncRNA_intronic
CAediting_395826	chr5_278602_+	ncRNA_intronic
CAediting_395827	chr5_278615_+	ncRNA_intronic
CAediting_395828	chr5_278625_+	ncRNA_intronic
CAediting_395829	chr5_278633_+	ncRNA_intronic
CAediting_395830	chr5_278657_+	ncRNA_intronic
CAediting_395831	chr5_278658_+	ncRNA_intronic
CAediting_395832	chr5_278659_+	ncRNA_intronic
CAediting_395833	chr5_278693_+	ncRNA_intronic
CAediting_395834	chr5_278695_+	ncRNA_intronic
CAediting_395835	chr5_283927_+	ncRNA_intronic
CAediting_395836	chr5_283998_+	ncRNA_intronic
CAediting_395837	chr5_284703_+	ncRNA_intronic
CAediting_395838	chr5_284715_+	ncRNA_intronic
CAediting_395839	chr5_284790_+	ncRNA_intronic
CAediting_395840	chr5_284803_+	ncRNA_intronic
CAediting_395841	chr5_284809_+	ncRNA_intronic
CAediting_395842	chr5_284811_+	ncRNA_intronic
CAediting_395843	chr5_284964_+	ncRNA_intronic
CAediting_395844	chr5_285028_+	ncRNA_intronic
CAediting_395845	chr5_285034_+	ncRNA_intronic
CAediting_395846	chr5_285064_+	ncRNA_intronic
CAediting_395847	chr5_311715_+	ncRNA_intronic
CAediting_395848	chr5_311719_+	ncRNA_intronic
CAediting_395849	chr5_311733_+	ncRNA_intronic
CAediting_395850	chr5_311737_+	ncRNA_intronic
CAediting_395851	chr5_311739_+	ncRNA_intronic
CAediting_395852	chr5_311749_+	ncRNA_intronic
CAediting_395853	chr5_311768_+	ncRNA_intronic
CAediting_395854	chr5_311774_+	ncRNA_intronic
CAediting_395855	chr5_311793_+	ncRNA_intronic
CAediting_395856	chr5_311794_+	ncRNA_intronic
CAediting_395857	chr5_311797_+	ncRNA_intronic
CAediting_395858	chr5_311811_+	ncRNA_intronic
CAediting_395859	chr5_311820_+	ncRNA_intronic
CAediting_395860	chr5_311900_+	ncRNA_intronic
CAediting_395861	chr5_311924_+	ncRNA_intronic
CAediting_395862	chr5_311963_+	ncRNA_intronic
CAediting_395863	chr5_312689_+	ncRNA_intronic
CAediting_395864	chr5_312695_+	ncRNA_intronic
CAediting_395865	chr5_312699_+	ncRNA_intronic
CAediting_395866	chr5_312703_+	ncRNA_intronic
CAediting_395867	chr5_312706_+	ncRNA_intronic
CAediting_395868	chr5_312712_+	ncRNA_intronic
CAediting_395869	chr5_312716_+	ncRNA_intronic
CAediting_395870	chr5_312719_+	ncRNA_intronic
CAediting_395871	chr5_312721_+	ncRNA_intronic
CAediting_395872	chr5_312722_+	ncRNA_intronic
CAediting_395873	chr5_312725_+	ncRNA_intronic
CAediting_395874	chr5_312730_+	ncRNA_intronic
CAediting_395875	chr5_312731_+	ncRNA_intronic
CAediting_395876	chr5_312760_+	ncRNA_intronic
CAediting_395877	chr5_312765_+	ncRNA_intronic
CAediting_395878	chr5_312775_+	ncRNA_intronic
CAediting_395879	chr5_312780_+	ncRNA_intronic
CAediting_395880	chr5_312792_+	ncRNA_intronic
CAediting_395881	chr5_312798_+	ncRNA_intronic
CAediting_395882	chr5_313494_+	ncRNA_intronic
CAediting_395883	chr5_313503_+	ncRNA_intronic
CAediting_395884	chr5_313508_+	ncRNA_intronic
CAediting_395885	chr5_313515_+	ncRNA_intronic
CAediting_395886	chr5_313527_+	ncRNA_intronic
CAediting_395887	chr5_313531_+	ncRNA_intronic
CAediting_395888	chr5_313554_+	ncRNA_intronic
CAediting_395889	chr5_313560_+	ncRNA_intronic
CAediting_395890	chr5_313561_+	ncRNA_intronic
CAediting_395891	chr5_313590_+	ncRNA_intronic
CAediting_395892	chr5_313607_+	ncRNA_intronic
CAediting_395893	chr5_313616_+	ncRNA_intronic
CAediting_395894	chr5_313697_+	ncRNA_intronic
CAediting_395895	chr5_313699_+	ncRNA_splicing
CAediting_395896	chr5_313701_+	ncRNA_exonic
CAediting_395897	chr5_313715_+	ncRNA_exonic
CAediting_395898	chr5_313719_+	ncRNA_exonic
CAediting_395899	chr5_313724_+	ncRNA_exonic
CAediting_395900	chr5_313726_+	ncRNA_exonic
CAediting_395901	chr5_313740_+	ncRNA_exonic
CAediting_395902	chr5_313741_+	ncRNA_exonic
CAediting_395903	chr5_313743_+	ncRNA_exonic
CAediting_395904	chr5_313750_+	ncRNA_exonic
CAediting_395905	chr5_313755_+	ncRNA_exonic
CAediting_395906	chr5_313762_+	ncRNA_exonic
CAediting_395907	chr5_313768_+	ncRNA_exonic
CAediting_395908	chr5_313774_+	ncRNA_exonic
CAediting_395909	chr5_313775_+	ncRNA_exonic
CAediting_395910	chr5_313785_+	ncRNA_exonic
CAediting_395911	chr5_313801_+	ncRNA_exonic
CAediting_395912	chr5_313802_+	ncRNA_exonic
CAediting_395913	chr5_324083_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_395762	chr5_275188_+	SINE	Alu	AluJo
CAediting_395763	chr5_275211_+	SINE	Alu	AluJo
CAediting_395764	chr5_276051_+	SINE	Alu	AluJb
CAediting_395765	chr5_276092_+	SINE	Alu	AluJb
CAediting_395766	chr5_276108_+	SINE	Alu	AluJb
CAediting_395767	chr5_276118_+	SINE	Alu	AluJb
CAediting_395768	chr5_276131_+	SINE	Alu	AluJb
CAediting_395769	chr5_276138_+	SINE	Alu	AluJb
CAediting_395770	chr5_276144_+	SINE	Alu	AluJb
CAediting_395771	chr5_276149_+	SINE	Alu	AluJb
CAediting_395772	chr5_276184_+	SINE	Alu	AluJb
CAediting_395773	chr5_276242_+	SINE	Alu	AluJb
CAediting_395774	chr5_276529_+	SINE	Alu	FLAM_C
CAediting_395775	chr5_276536_+	SINE	Alu	FLAM_C
CAediting_395776	chr5_277147_+	SINE	Alu	AluSc8
CAediting_395777	chr5_277149_+	SINE	Alu	AluSc8
CAediting_395778	chr5_277162_+	SINE	Alu	AluSc8
CAediting_395779	chr5_277255_+	SINE	Alu	AluSc8
CAediting_395780	chr5_277265_+	SINE	Alu	AluSc8
CAediting_395781	chr5_277431_+	SINE	Alu	AluY
CAediting_395782	chr5_277441_+	SINE	Alu	AluY
CAediting_395783	chr5_277443_+	SINE	Alu	AluY
CAediting_395784	chr5_277483_+	SINE	Alu	AluY
CAediting_395785	chr5_277508_+	SINE	Alu	AluY
CAediting_395786	chr5_277563_+	SINE	Alu	AluY
CAediting_395787	chr5_277575_+	SINE	Alu	AluY
CAediting_395788	chr5_277597_+	SINE	Alu	AluY
CAediting_395789	chr5_277610_+	SINE	Alu	AluSc8
CAediting_395790	chr5_277616_+	SINE	Alu	AluSc8
CAediting_395791	chr5_277641_+	SINE	Alu	AluSc8
CAediting_395792	chr5_277729_+	SINE	Alu	AluSx
CAediting_395793	chr5_277730_+	SINE	Alu	AluSx
CAediting_395794	chr5_277739_+	SINE	Alu	AluSx
CAediting_395795	chr5_277740_+	SINE	Alu	AluSx
CAediting_395796	chr5_277751_+	SINE	Alu	AluSx
CAediting_395797	chr5_277756_+	SINE	Alu	AluSx
CAediting_395798	chr5_277757_+	SINE	Alu	AluSx
CAediting_395799	chr5_277758_+	SINE	Alu	AluSx
CAediting_395800	chr5_277763_+	SINE	Alu	AluSx
CAediting_395801	chr5_277768_+	SINE	Alu	AluSx
CAediting_395802	chr5_277776_+	SINE	Alu	AluSx
CAediting_395803	chr5_277794_+	SINE	Alu	AluSx
CAediting_395804	chr5_277795_+	SINE	Alu	AluSx
CAediting_395805	chr5_277800_+	SINE	Alu	AluSx
CAediting_395806	chr5_277804_+	SINE	Alu	AluSx
CAediting_395807	chr5_277830_+	SINE	Alu	AluSx
CAediting_395808	chr5_277835_+	SINE	Alu	AluSx
CAediting_395809	chr5_277836_+	SINE	Alu	AluSx
CAediting_395810	chr5_277847_+	SINE	Alu	AluSx
CAediting_395811	chr5_277867_+	SINE	Alu	AluSx
CAediting_395812	chr5_277869_+	SINE	Alu	AluSx
CAediting_395813	chr5_278454_+	SINE	Alu	AluJb
CAediting_395814	chr5_278455_+	SINE	Alu	AluJb
CAediting_395815	chr5_278523_+	SINE	Alu	AluJb
CAediting_395816	chr5_278524_+	SINE	Alu	AluJb
CAediting_395817	chr5_278549_+	SINE	Alu	AluJb
CAediting_395818	chr5_278551_+	SINE	Alu	AluJb
CAediting_395819	chr5_278552_+	SINE	Alu	AluJb
CAediting_395820	chr5_278555_+	SINE	Alu	AluJb
CAediting_395821	chr5_278559_+	SINE	Alu	AluJb
CAediting_395822	chr5_278560_+	SINE	Alu	AluJb
CAediting_395823	chr5_278566_+	SINE	Alu	AluJb
CAediting_395824	chr5_278592_+	SINE	Alu	AluJb
CAediting_395825	chr5_278598_+	SINE	Alu	AluJb
CAediting_395826	chr5_278602_+	SINE	Alu	AluJb
CAediting_395827	chr5_278615_+	SINE	Alu	AluJb
CAediting_395828	chr5_278625_+	SINE	Alu	AluJb
CAediting_395829	chr5_278633_+	SINE	Alu	AluJb
CAediting_395830	chr5_278657_+	SINE	Alu	AluJb
CAediting_395831	chr5_278658_+	SINE	Alu	AluJb
CAediting_395832	chr5_278659_+	SINE	Alu	AluJb
CAediting_395833	chr5_278693_+	SINE	Alu	AluJb
CAediting_395834	chr5_278695_+	SINE	Alu	AluJb
CAediting_395835	chr5_283927_+	LTR	ERVL	MLT2B4
CAediting_395836	chr5_283998_+	LTR	ERVL	MLT2B4
CAediting_395837	chr5_284703_+	LTR	ERVL	MLT2B4
CAediting_395838	chr5_284715_+	LTR	ERVL	MLT2B4
CAediting_395839	chr5_284790_+	LTR	ERVL	MLT2B4
CAediting_395840	chr5_284803_+	LTR	ERVL	MLT2B4
CAediting_395843	chr5_284964_+	LTR	ERVL	MLT2B4
CAediting_395844	chr5_285028_+	LTR	ERVL	MLT2B4
CAediting_395845	chr5_285034_+	LTR	ERVL	MLT2B4
CAediting_395846	chr5_285064_+	LTR	ERVL	MLT2B4
CAediting_395847	chr5_311715_+	SINE	Alu	AluSx1
CAediting_395848	chr5_311719_+	SINE	Alu	AluSx1
CAediting_395849	chr5_311733_+	SINE	Alu	AluSx1
CAediting_395850	chr5_311737_+	SINE	Alu	AluSx1
CAediting_395851	chr5_311739_+	SINE	Alu	AluSx1
CAediting_395852	chr5_311749_+	SINE	Alu	AluSx1
CAediting_395853	chr5_311768_+	SINE	Alu	AluSx1
CAediting_395854	chr5_311774_+	SINE	Alu	AluSx1
CAediting_395855	chr5_311793_+	SINE	Alu	AluSx1
CAediting_395856	chr5_311794_+	SINE	Alu	AluSx1
CAediting_395857	chr5_311797_+	SINE	Alu	AluSx1
CAediting_395858	chr5_311811_+	SINE	Alu	AluSx1
CAediting_395859	chr5_311820_+	SINE	Alu	AluSx1
CAediting_395860	chr5_311900_+	SINE	Alu	AluSx1
CAediting_395861	chr5_311924_+	SINE	Alu	AluSx1
CAediting_395862	chr5_311963_+	SINE	Alu	AluSx1
CAediting_395863	chr5_312689_+	SINE	Alu	AluSx3
CAediting_395864	chr5_312695_+	SINE	Alu	AluSx3
CAediting_395865	chr5_312699_+	SINE	Alu	AluSx3
CAediting_395866	chr5_312703_+	SINE	Alu	AluSx3
CAediting_395867	chr5_312706_+	SINE	Alu	AluSx3
CAediting_395868	chr5_312712_+	SINE	Alu	AluSx3
CAediting_395869	chr5_312716_+	SINE	Alu	AluSx3
CAediting_395870	chr5_312719_+	SINE	Alu	AluSx3
CAediting_395871	chr5_312721_+	SINE	Alu	AluSx3
CAediting_395872	chr5_312722_+	SINE	Alu	AluSx3
CAediting_395873	chr5_312725_+	SINE	Alu	AluSx3
CAediting_395874	chr5_312730_+	SINE	Alu	AluSx3
CAediting_395875	chr5_312731_+	SINE	Alu	AluSx3
CAediting_395876	chr5_312760_+	SINE	Alu	AluSx3
CAediting_395877	chr5_312765_+	SINE	Alu	AluSx3
CAediting_395878	chr5_312775_+	SINE	Alu	AluSx3
CAediting_395879	chr5_312780_+	SINE	Alu	AluSx3
CAediting_395880	chr5_312792_+	SINE	Alu	AluSx3
CAediting_395881	chr5_312798_+	SINE	Alu	AluSx3
CAediting_395882	chr5_313494_+	SINE	Alu	AluJb
CAediting_395883	chr5_313503_+	SINE	Alu	AluJb
CAediting_395884	chr5_313508_+	SINE	Alu	AluJb
CAediting_395885	chr5_313515_+	SINE	Alu	AluJb
CAediting_395886	chr5_313527_+	SINE	Alu	AluJb
CAediting_395887	chr5_313531_+	SINE	Alu	AluJb
CAediting_395888	chr5_313554_+	SINE	Alu	AluJb
CAediting_395889	chr5_313560_+	SINE	Alu	AluJb
CAediting_395890	chr5_313561_+	SINE	Alu	AluJb
CAediting_395891	chr5_313590_+	SINE	Alu	AluJb
CAediting_395892	chr5_313607_+	SINE	Alu	AluJb
CAediting_395893	chr5_313616_+	SINE	Alu	AluJb
CAediting_395894	chr5_313697_+	SINE	Alu	AluJb
CAediting_395895	chr5_313699_+	SINE	Alu	AluJb
CAediting_395896	chr5_313701_+	SINE	Alu	AluJb
CAediting_395897	chr5_313715_+	SINE	Alu	AluJb
CAediting_395898	chr5_313719_+	SINE	Alu	AluJb
CAediting_395899	chr5_313724_+	SINE	Alu	AluJb
CAediting_395900	chr5_313726_+	SINE	Alu	AluJb
CAediting_395901	chr5_313740_+	SINE	Alu	AluJb
CAediting_395902	chr5_313741_+	SINE	Alu	AluJb
CAediting_395903	chr5_313743_+	SINE	Alu	AluJb
CAediting_395904	chr5_313750_+	SINE	Alu	AluJb
CAediting_395905	chr5_313755_+	SINE	Alu	AluJb
CAediting_395906	chr5_313762_+	SINE	Alu	AluJb
CAediting_395907	chr5_313768_+	SINE	Alu	AluJb
CAediting_395908	chr5_313774_+	SINE	Alu	AluJb
CAediting_395909	chr5_313775_+	SINE	Alu	AluJb
CAediting_395910	chr5_313785_+	SINE	Alu	AluJb
CAediting_395911	chr5_313801_+	SINE	Alu	AluJb
CAediting_395912	chr5_313802_+	SINE	Alu	AluJb
CAediting_395913	chr5_324083_+	SINE	Alu	AluSg

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RNA A-to-I editing events in the alternative splicing sites for PDCD6

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000249915.6.PDCD6.

Correlation between RNA A-to-I editing and PSI for ENSG00000249915.6.PDCD6.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for PDCD6

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for PDCD6

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for PDCD6

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_395774	chr5_276529_+	ENSG00000249915.6	ENST00000509581	hsa-miR-4433a-3p	276522	276528	7mer-m8	276508	276529	146.00	-21.07
CAediting_395774	chr5_276529_+	ENSG00000249915.6	ENST00000509581	hsa-miR-665	276523	276529	7mer-m8	276511	276530	165.00	-27.56
CAediting_395774	chr5_276529_+	ENSG00000249915.6	ENST00000509581	hsa-miR-6840-3p	276524	276530	7mer-m8	276510	276531	159.00	-23.47
CAediting_395855	chr5_311793_+	ENSG00000249915.6	ENST00000505526	hsa-miR-371a-5p	311788	311794	7mer-m8	311776	311795	158.00	-20.65
CAediting_395855	chr5_311793_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6715b-3p	311787	311793	7mer-m8	311773	311794	148.00	-21.64
CAediting_395856	chr5_311794_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4774-3p	311791	311797	7mer-m8	311777	311798	148.00	-15.03
CAediting_395766	chr5_276108_+	ENSG00000249915.6	ENST00000509581	hsa-miR-6768-5p	276102	276108	7mer-m8	276087	276109	140.00	-19.36
CAediting_395767	chr5_276118_+	ENSG00000249915.6	ENST00000509581	hsa-miR-1207-3p	276111	276117	7mer-m8	276101	276118	140.00	-12.56
CAediting_395767	chr5_276118_+	ENSG00000249915.6	ENST00000509581	hsa-miR-646	276113	276119	7mer-m8	276102	276120	145.00	-16.24
CAediting_395768	chr5_276131_+	ENSG00000249915.6	ENST00000509581	hsa-miR-6849-3p	276124	276130	7mer-m8	276110	276131	140.00	-18.03
CAediting_395768	chr5_276131_+	ENSG00000249915.6	ENST00000509581	hsa-miR-7977	276126	276132	7mer-m8	276116	276133	145.00	-18.57
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3136-3p	276145	276151	7mer-m8	276131	276152	142.00	-15.75
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-4747-3p	276147	276152	6mer	276132	276153	148.00	-26.99
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-7155-3p	276145	276151	7mer-m8	276134	276152	146.00	-17.49
CAediting_395775	chr5_276536_+	ENSG00000249915.6	ENST00000509581	hsa-miR-1199-5p	276529	276535	7mer-m8	276517	276536	148.00	-22.60
CAediting_395775	chr5_276536_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3622a-3p	276532	276539	8mer-1a	276517	276539	146.00	-17.86
CAediting_395775	chr5_276536_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3622b-3p	276532	276539	8mer-1a	276519	276539	151.00	-20.14
CAediting_395775	chr5_276536_+	ENSG00000249915.6	ENST00000509581	hsa-miR-6751-3p	276529	276535	7mer-m8	276516	276536	145.00	-14.12
CAediting_395851	chr5_311739_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4485-5p	311735	311741	7mer-m8	311727	311742	140.00	-18.01
CAediting_395851	chr5_311739_+	ENSG00000249915.6	ENST00000505526	hsa-miR-661	311733	311739	7mer-m8	311717	311740	150.00	-24.49
CAediting_395851	chr5_311739_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6742-3p	311732	311738	7mer-m8	311720	311739	140.00	-13.49
CAediting_395853	chr5_311768_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6090	311766	311773	8mer-1a	311757	311773	154.00	-30.72
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-10396b-5p	311770	311775	6mer	311759	311776	143.00	-32.87
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6787-5p	311770	311775	6mer	311756	311776	156.00	-33.58
CAediting_395859	chr5_311820_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4655-5p	311815	311822	8mer-1a	311802	311822	168.00	-30.79
CAediting_395860	chr5_311900_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4786-5p	311897	311904	8mer-1a	311884	311904	153.00	-27.29
CAediting_395860	chr5_311900_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6849-3p	311893	311899	7mer-m8	311880	311900	156.00	-22.23
CAediting_395773	chr5_276242_+	ENSG00000249915.6	ENST00000509581	hsa-miR-4639-3p	276239	276245	7mer-m8	276229	276246	151.00	-14.01
CAediting_395773	chr5_276242_+	ENSG00000249915.6	ENST00000509581	hsa-miR-4753-3p	276236	276242	7mer-m8	276222	276243	152.00	-9.54
CAediting_395773	chr5_276242_+	ENSG00000249915.6	ENST00000509581	hsa-miR-6777-3p	276240	276247	8mer-1a	276228	276247	149.00	-19.61
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1273c	311728	311733	6mer	311713	311734	144.00	-27.12
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1285-3p	311732	311738	7mer-1a	311717	311738	156.00	-31.73
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1285-3p	311732	311738	7mer-1a	311717	311738	156.00	-31.73
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4486	311731	311738	8mer-1a	311722	311738	145.00	-19.23
CAediting_395862	chr5_311963_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6514-3p	311958	311964	7mer-m8	311942	311965	151.00	-17.21

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_395770	chr5_276144_+	ENSG00000249915.6	ENST00000509581	hsa-miR-1245a	276139	276145	7mer-m8	276126	276146	145	-15.65
CAediting_395769	chr5_276138_+	ENSG00000249915.6	ENST00000509581	hsa-miR-141-5p	276135	276141	7mer-m8	276120	276142	150	-13.94
CAediting_395774	chr5_276529_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3135a	276525	276531	7mer-m8	276508	276532	152	-24.92
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3155a	276147	276153	7mer-m8	276136	276154	145	-23.95
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-3155b	276147	276153	7mer-m8	276139	276154	145	-23.45
CAediting_395764	chr5_276051_+	ENSG00000249915.6	ENST00000509581	hsa-miR-409-3p	276049	276055	7mer-m8	276035	276056	149	-12.98
CAediting_395771	chr5_276149_+	ENSG00000249915.6	ENST00000509581	hsa-miR-484	276147	276153	7mer-m8	276132	276154	154	-25.75
CAediting_395767	chr5_276118_+	ENSG00000249915.6	ENST00000509581	hsa-miR-562	276114	276120	7mer-m8	276102	276121	150	-12.47
CAediting_395767	chr5_276118_+	ENSG00000249915.6	ENST00000509581	hsa-miR-5697	276115	276121	7mer-m8	276101	276122	146	-18.17
CAediting_395766	chr5_276108_+	ENSG00000249915.6	ENST00000509581	hsa-miR-7151-3p	276101	276107	7mer-m8	276087	276108	143	-13.18
CAediting_395764	chr5_276051_+	ENSG00000249915.6	ENST00000509581	hsa-miR-744-3p	276047	276053	7mer-m8	276033	276054	145	-14.09
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1233-5p	311768	311774	7mer-m8	311752	311775	148	-27.12
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1233-5p	311768	311774	7mer-m8	311752	311775	148	-27.12
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1262	311730	311736	7mer-m8	311716	311737	140	-15.41
CAediting_395850	chr5_311737_+	ENSG00000249915.6	ENST00000505526	hsa-miR-1262	311730	311736	7mer-m8	311716	311737	140	-15.41
CAediting_395857	chr5_311797_+	ENSG00000249915.6	ENST00000505526	hsa-miR-219b-3p	311794	311800	7mer-m8	311781	311801	149	-14.01
CAediting_395857	chr5_311797_+	ENSG00000249915.6	ENST00000505526	hsa-miR-302f	311793	311799	7mer-m8	311784	311800	145	-8.09
CAediting_395859	chr5_311820_+	ENSG00000249915.6	ENST00000505526	hsa-miR-3150a-3p	311813	311819	7mer-m8	311802	311820	146	-27.75
CAediting_395852	chr5_311749_+	ENSG00000249915.6	ENST00000505526	hsa-miR-324-3p	311746	311752	7mer-m8	311731	311753	148	-22.02
CAediting_395862	chr5_311963_+	ENSG00000249915.6	ENST00000505526	hsa-miR-3686	311956	311962	7mer-m8	311942	311963	140	-10.08
CAediting_395852	chr5_311749_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4252	311747	311754	8mer-1a	311735	311754	143	-16.55
CAediting_395858	chr5_311811_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4478	311808	311814	7mer-m8	311800	311815	149	-25.05
CAediting_395858	chr5_311811_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4649-3p	311805	311811	7mer-m8	311792	311812	140	-14.11
CAediting_395859	chr5_311820_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4700-5p	311814	311820	7mer-m8	311798	311821	154	-25.78
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4701-3p	311730	311736	7mer-m8	311717	311737	153	-22.36
CAediting_395850	chr5_311737_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4701-3p	311730	311736	7mer-m8	311717	311737	153	-22.36
CAediting_395852	chr5_311749_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4793-3p	311743	311749	7mer-m8	311728	311750	153	-22.63
CAediting_395847	chr5_311715_+	ENSG00000249915.6	ENST00000505526	hsa-miR-514b-5p	311709	311714	6mer	311694	311715	140	-12.23
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6134	311771	311777	7mer-m8	311759	311778	148	-16.72
CAediting_395862	chr5_311963_+	ENSG00000249915.6	ENST00000505526	hsa-miR-654-3p	311959	311965	7mer-m8	311944	311966	151	-16.76
CAediting_395849	chr5_311733_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6736-5p	311730	311736	7mer-m8	311717	311737	143	-20.47
CAediting_395850	chr5_311737_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6736-5p	311730	311736	7mer-m8	311717	311737	143	-20.47
CAediting_395854	chr5_311774_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6778-5p	311768	311774	7mer-m8	311751	311775	145	-21.43
CAediting_395858	chr5_311811_+	ENSG00000249915.6	ENST00000505526	hsa-miR-7160-5p	311806	311812	7mer-m8	311793	311813	147	-20.02
CAediting_395852	chr5_311749_+	ENSG00000249915.6	ENST00000505526	hsa-miR-7703	311742	311748	7mer-m8	311727	311749	150	-18.58
CAediting_395859	chr5_311820_+	ENSG00000249915.6	ENST00000505526	hsa-miR-8089	311814	311820	7mer-m8	311797	311821	150	-29.74

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000249915.6	ENST00000628729	hsa-miR-1304-3p	306638	306644	7mer-m8	306625	306645	150	-19.74
CAediting_980496	chr14_31014685_-	ENSG00000249915.6	ENST00000509581	hsa-miR-624-3p	276061	276067	7mer-m8	276048	276068	148	-12.79
CAediting_393	chr1_1167164_+	ENSG00000249915.6	ENST00000509581	hsa-miR-200b-3p	276277	276283	7mer-m8	276260	276284	156	-16.19
CAediting_846604	chr11_93733708_-	ENSG00000249915.6	ENST00000505526	hsa-miR-1304-3p	306638	306644	7mer-m8	306625	306645	150	-19.74
CAediting_688080	chr9_63819626_+	ENSG00000249915.6	ENST00000505526	hsa-miR-4477b	312329	312335	7mer-m8	312316	312336	150	-13.46
CAediting_1351755	chr19_40282625_-	ENSG00000249915.6	ENST00000614778	hsa-miR-641	314809	314815	7mer-m8	314794	314816	152	-19.27
CAediting_1351755	chr19_40282625_-	ENSG00000249915.6	ENST00000618970	hsa-miR-641	314809	314815	7mer-m8	314794	314816	152	-19.27
CAediting_1229414	chr17_67471546_+	ENSG00000249915.6	ENST00000628729	hsa-miR-548aa	314495	314501	7mer-m8	314473	314502	157	-14.81
CAediting_1351755	chr19_40282625_-	ENSG00000249915.6	ENST00000628729	hsa-miR-641	314809	314815	7mer-m8	314794	314816	152	-19.27
CAediting_1351755	chr19_40282625_-	ENSG00000249915.6	ENST00000264933	hsa-miR-641	314809	314815	7mer-m8	314794	314816	152	-19.27
CAediting_1229414	chr17_67471546_+	ENSG00000249915.6	ENST00000505221	hsa-miR-548aa	314495	314501	7mer-m8	314473	314502	157	-14.81
CAediting_1229413	chr17_67471544_+	ENSG00000249915.6	ENST00000509581	hsa-miR-548aa	276720	276726	7mer-m8	276705	276727	150	-14.16
CAediting_1160181	chr17_7017644_-	ENSG00000249915.6	ENST00000509581	hsa-miR-195-3p	276050	276056	7mer-m8	276036	276057	162	-16.73
CAediting_1351755	chr19_40282625_-	ENSG00000249915.6	ENST00000507528	hsa-miR-641	314809	314815	7mer-m8	314794	314816	152	-19.27
CAediting_1399425	chr20_1392958_-	ENSG00000249915.6	ENST00000505526	hsa-miR-6869-5p	312319	312325	7mer-m8	312305	312326	148	-18.02
CAediting_396018	chr5_1062918_-	ENSG00000249915.6	ENST00000505526	hsa-miR-4635	312330	312336	7mer-m8	312321	312337	141	-15.8
CAediting_396018	chr5_1062918_-	ENSG00000249915.6	ENST00000505526	hsa-miR-4635	311914	311920	7mer-m8	311901	311921	162	-21.04
CAediting_580943	chr7_100356700_+	ENSG00000249915.6	ENST00000505526	hsa-miR-6840-3p	311782	311788	7mer-m8	311768	311789	156	-30.39

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000249915.6	ENST00000505526	hsa-miR-548aa	311625	311631	7mer-m8	311613	311632	148	-14.7
CAediting_1229414	chr17_67471546_+	ENSG00000249915.6	ENST00000505526	hsa-miR-548aa	311625	311631	7mer-m8	311613	311632	148	-14.7
CAediting_1229415	chr17_67471547_+	ENSG00000249915.6	ENST00000505526	hsa-miR-548aa	311625	311631	7mer-m8	311613	311632	148	-14.7
CAediting_228905	chr2_188297554_+	ENSG00000249915.6	ENST00000505526	hsa-miR-561-3p	312005	312011	7mer-m8	311991	312012	140	-5.31
CAediting_524911	chr7_5495852_-	ENSG00000249915.6	ENST00000505526	hsa-miR-589-3p	311660	311666	7mer-m8	311641	311667	151	-19.8
CAediting_748296	chr10_51299626_+	ENSG00000249915.6	ENST00000505526	hsa-miR-605-3p	311362	311368	7mer-m8	311348	311369	149	-15.15

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PDCD6

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000505526.1	nonsense_mediated_decay
ENST00000509581.4	protein_coding
ENST00000511482.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_395847	ENST00000505526.1	chr5_311715_+	-560.00	-559.10	-584.10
CAediting_395848	ENST00000505526.1	chr5_311719_+	-560.30	-559.10	-584.10
CAediting_395849	ENST00000505526.1	chr5_311733_+	-558.80	-559.10	-584.10
CAediting_395850	ENST00000505526.1	chr5_311737_+	-559.90	-559.10	-584.10
CAediting_395851	ENST00000505526.1	chr5_311739_+	-559.97	-559.10	-584.10
CAediting_395852	ENST00000505526.1	chr5_311749_+	-559.37	-559.10	-584.10
CAediting_395853	ENST00000505526.1	chr5_311768_+	-561.47	-559.10	-584.10
CAediting_395854	ENST00000505526.1	chr5_311774_+	-561.50	-559.10	-584.10
CAediting_395855	ENST00000505526.1	chr5_311793_+	-562.47	-559.10	-584.10
CAediting_395856	ENST00000505526.1	chr5_311794_+	-565.30	-559.10	-584.10
CAediting_395857	ENST00000505526.1	chr5_311797_+	-558.40	-559.10	-584.10
CAediting_395858	ENST00000505526.1	chr5_311811_+	-559.20	-559.10	-584.10
CAediting_395859	ENST00000505526.1	chr5_311820_+	-561.20	-559.10	-584.10
CAediting_395860	ENST00000505526.1	chr5_311900_+	-563.20	-559.10	-584.10
CAediting_395861	ENST00000505526.1	chr5_311924_+	-559.10	-559.10	-584.10
CAediting_395862	ENST00000505526.1	chr5_311963_+	-563.60	-559.10	-584.10
CAediting_395764	ENST00000509581.4	chr5_276051_+	-398.30	-399.10	-397.70
CAediting_395765	ENST00000509581.4	chr5_276092_+	-403.20	-399.10	-397.70
CAediting_395766	ENST00000509581.4	chr5_276108_+	-400.80	-399.10	-397.70
CAediting_395767	ENST00000509581.4	chr5_276118_+	-399.10	-399.10	-397.70
CAediting_395768	ENST00000509581.4	chr5_276131_+	-398.20	-399.10	-397.70
CAediting_395769	ENST00000509581.4	chr5_276138_+	-398.20	-399.10	-397.70
CAediting_395770	ENST00000509581.4	chr5_276144_+	-398.70	-399.10	-397.70
CAediting_395771	ENST00000509581.4	chr5_276149_+	-398.20	-399.10	-397.70
CAediting_395772	ENST00000509581.4	chr5_276184_+	-399.10	-399.10	-397.70
CAediting_395773	ENST00000509581.4	chr5_276242_+	-400.20	-399.10	-397.70
CAediting_395774	ENST00000509581.4	chr5_276529_+	-397.80	-399.10	-397.70
CAediting_395775	ENST00000509581.4	chr5_276536_+	-398.80	-399.10	-397.70
CAediting_395896	ENST00000511482.1	chr5_313701_+	-271.00	-271.00	-298.60
CAediting_395897	ENST00000511482.1	chr5_313715_+	-271.00	-271.00	-298.60
CAediting_395898	ENST00000511482.1	chr5_313719_+	-272.50	-271.00	-298.60
CAediting_395899	ENST00000511482.1	chr5_313724_+	-273.60	-271.00	-298.60
CAediting_395900	ENST00000511482.1	chr5_313726_+	-273.70	-271.00	-298.60
CAediting_395901	ENST00000511482.1	chr5_313740_+	-271.00	-271.00	-298.60
CAediting_395902	ENST00000511482.1	chr5_313741_+	-274.00	-271.00	-298.60
CAediting_395903	ENST00000511482.1	chr5_313743_+	-270.60	-271.00	-298.60
CAediting_395904	ENST00000511482.1	chr5_313750_+	-275.40	-271.00	-298.60
CAediting_395905	ENST00000511482.1	chr5_313755_+	-275.20	-271.00	-298.60
CAediting_395906	ENST00000511482.1	chr5_313762_+	-275.50	-271.00	-298.60
CAediting_395907	ENST00000511482.1	chr5_313768_+	-272.20	-271.00	-298.60
CAediting_395908	ENST00000511482.1	chr5_313774_+	-271.40	-271.00	-298.60
CAediting_395909	ENST00000511482.1	chr5_313775_+	-273.00	-271.00	-298.60
CAediting_395910	ENST00000511482.1	chr5_313785_+	-273.20	-271.00	-298.60
CAediting_395911	ENST00000511482.1	chr5_313801_+	-273.70	-271.00	-298.60
CAediting_395912	ENST00000511482.1	chr5_313802_+	-275.30	-271.00	-298.60

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Relation with ADAR for PDCD6

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_395850	chr5_311737_+	0.0140702098703027	0.22552456992386	.	.	.	.
LUAD	CAediting_395850	chr5_311737_+	0.0294806748088735	0.229610112533147	.	.	.	.
BRCA	CAediting_395856	chr5_311794_+	0.000921625104820444	0.311578735975542	.	.	.	.
BRCA	CAediting_395863	chr5_312689_+	0.0020406284375834	0.289718762906515	.	.	.	.
LUAD	CAediting_395863	chr5_312689_+	0.00436332672101612	0.280034911418383	.	.	.	.
STAD	CAediting_395863	chr5_312689_+	.	.	.	.	0.0274054411234343	0.191293755186283
ESCA	CAediting_395873	chr5_312725_+	.	.	.	.	0.0302751921538758	0.266915419609555
LGG	CAediting_395899	chr5_313724_+	.	.	8.20372452158532e-06	0.498831879551836	.	.
LUSC	CAediting_395899	chr5_313724_+	.	.	4.87004111926803e-05	0.443018323026777	0.0207708281502448	0.261446326309393
BLCA	CAediting_395907	chr5_313768_+	0.00904509612469782	0.348858148208502	.	.	.	.
LGG	CAediting_395907	chr5_313768_+	.	.	4.83907148464185e-05	0.243767655701731	.	.
BRCA	CAediting_395907	chr5_313768_+	5.12450211954959e-07	0.223188921138421	.	.	.	.
LIHC	CAediting_395907	chr5_313768_+	0.0359128649731505	0.286185009604711	.	.	.	.
LUAD	CAediting_395907	chr5_313768_+	0.0238692833809119	0.160529953522211	.	.	.	.
THCA	CAediting_395907	chr5_313768_+	3.04445062992905e-05	0.362405369065348	.	.	.	.
PCPG	CAediting_395907	chr5_313768_+	1.39432782825665e-09	0.506868350726159	.	.	.	.
LGG	CAediting_395909	chr5_313775_+	0.00826845067290189	0.220061033461974	0.00273506120320698	0.248774125109878	.	.

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Relation with cancer stages for PDCD6

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_395856	chr5_311794_+	0.00740723512400559	0.258729428972522
BRCA	pathologic_stage	CAediting_395857	chr5_311797_+	0.009181705097184	0.313725462526779
KIRC	pathologic_stage	CAediting_395857	chr5_311797_+	0.037655679573792	0.26680962502256
STAD	pathologic_stage	CAediting_395877	chr5_312765_+	0.0194244396041482	0.30356460355604

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Relation with survival for PDCD6

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_395907	chr5_313768_+	0.0164388129160629	0.0133166	0.0612715
LUAD	CAediting_395899	chr5_313724_+	0.00885359547122966	0.0153882	0.000928974

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RelatedDrugs for PDCD6

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
PDCD6	O75340	DB11348	Calcium Phosphate	Programmed cell death protein 6	SmallMoleculeDrug	approved
PDCD6	O75340	DB14481	Calcium phosphate dihydrate	Programmed cell death protein 6	SmallMoleculeDrug	approved
PDCD6	O75340	DB01593	Zinc	Programmed cell death protein 6	SmallMoleculeDrug	approved\|investigational
PDCD6	O75340	DB11093	Calcium citrate	Programmed cell death protein 6	SmallMoleculeDrug	approved\|investigational
PDCD6	O75340	DB14487	Zinc acetate	Programmed cell death protein 6	SmallMoleculeDrug	approved\|investigational

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RelatedDiseases for PDCD6

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PDCD6	C0011573	Endogenous depression	1	PSYGENET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene