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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RAB6C-AS1 (CAeditome ID:100131320)

Gene summary for RAB6C-AS1

check button Gene summary
Gene informationGene symbol

RAB6C-AS1

Gene ID

100131320

Gene nameRAB6C antisense RNA 1
Synonyms-
Cytomap

2q21.1

Type of genencRNA
Description-
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RAB6C-AS1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000225449.3

check button RNA A-to-I editing events in Cancer.
CAediting_212394(129969270, -), CAediting_212395(129969387, -), CAediting_212396(129969405, -), CAediting_212397(129969414, -), CAediting_212398(129969424, -), CAediting_212399(129969433, -), CAediting_212400(129969437, -), CAediting_212401(129969451, -), CAediting_212402(129969459, -), CAediting_212403(129969460, -), CAediting_212404(129969466, -), CAediting_212405(129969468, -), CAediting_212406(129969886, -), CAediting_212407(129969894, -), CAediting_212408(129969978, -), CAediting_212409(129969990, -), CAediting_212410(129969991, -), CAediting_212411(129970000, -), CAediting_212412(129970013, -), CAediting_212413(129970017, -), CAediting_212414(129970018, -), CAediting_212415(129970032, -), CAediting_212416(129970956, -), CAediting_212417(129971401, -), CAediting_212418(129971409, -), CAediting_212419(129971434, -), CAediting_212420(129971459, -), CAediting_212421(129971473, -), CAediting_212422(129971474, -), CAediting_212423(129971486, -), CAediting_212424(129971497, -), CAediting_212425(129971592, -), CAediting_212426(129971593, -), CAediting_212427(129971661, -), CAediting_212428(129971662, -), CAediting_212429(129971981, -), CAediting_212430(129971990, -), CAediting_212431(129972005, -), CAediting_212432(129972007, -), CAediting_212433(129972008, -), CAediting_212434(129972032, -), CAediting_212435(129972045, -), CAediting_212436(129972056, -), CAediting_212437(129972058, -), CAediting_212438(129973205, -), CAediting_212439(129973208, -), CAediting_212440(129973233, -), CAediting_212441(129973253, -), CAediting_212442(129973276, -), CAediting_212443(129973285, -), CAediting_212444(129973327, -), CAediting_212445(129973346, -), CAediting_212446(129973351, -), CAediting_212447(129973390, -), CAediting_212448(129973398, -), CAediting_212449(129973399, -), CAediting_212450(129973427, -), CAediting_212451(129974263, -), CAediting_212452(129974267, -), CAediting_212453(129974357, -), CAediting_212454(129974358, -), CAediting_212455(129974426, -), CAediting_212456(129974427, -), CAediting_212457(129974433, -), CAediting_212458(129974573, -), CAediting_212459(129974586, -), CAediting_212460(129974665, -), CAediting_212461(129974705, -), CAediting_212462(129974707, -), CAediting_212463(129974717, -), CAediting_212464(129974728, -), CAediting_212465(129975665, -), CAediting_212466(129975666, -), CAediting_212467(129975711, -), CAediting_212468(129975714, -), CAediting_212469(129975728, -), CAediting_212470(129975731, -), CAediting_212471(129975732, -), CAediting_212472(129975733, -), CAediting_212473(129975786, -), CAediting_212474(129975824, -), CAediting_212475(129975829, -), CAediting_212476(129975831, -), CAediting_212477(129975832, -), CAediting_212478(129975834, -), CAediting_212479(129975903, -), CAediting_212480(129975909, -), CAediting_212481(129975911, -), CAediting_212482(129975915, -), CAediting_212483(129976335, -), CAediting_212484(129976339, -), CAediting_212485(129976353, -), CAediting_212486(129976354, -), CAediting_212487(129976417, -), CAediting_212488(129976420, -), CAediting_212489(129976437, -), CAediting_212490(129976488, -), CAediting_212491(129976517, -), CAediting_212492(129976518, -), CAediting_212493(129976524, -), CAediting_212494(129976598, -), CAediting_212495(129978067, -), CAediting_212496(129978071, -), CAediting_212497(129978074, -),

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RNA editing positional annotations for RAB6C-AS1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_212394chr2_129969270_-ncRNA_intronic
CAediting_212395chr2_129969387_-ncRNA_intronic
CAediting_212396chr2_129969405_-ncRNA_intronic
CAediting_212397chr2_129969414_-ncRNA_intronic
CAediting_212398chr2_129969424_-ncRNA_intronic
CAediting_212399chr2_129969433_-ncRNA_intronic
CAediting_212400chr2_129969437_-ncRNA_intronic
CAediting_212401chr2_129969451_-ncRNA_intronic
CAediting_212402chr2_129969459_-ncRNA_intronic
CAediting_212403chr2_129969460_-ncRNA_intronic
CAediting_212404chr2_129969466_-ncRNA_intronic
CAediting_212405chr2_129969468_-ncRNA_intronic
CAediting_212406chr2_129969886_-ncRNA_intronic
CAediting_212407chr2_129969894_-ncRNA_intronic
CAediting_212408chr2_129969978_-ncRNA_intronic
CAediting_212409chr2_129969990_-ncRNA_intronic
CAediting_212410chr2_129969991_-ncRNA_intronic
CAediting_212411chr2_129970000_-ncRNA_intronic
CAediting_212412chr2_129970013_-ncRNA_intronic
CAediting_212413chr2_129970017_-ncRNA_intronic
CAediting_212414chr2_129970018_-ncRNA_intronic
CAediting_212415chr2_129970032_-ncRNA_intronic
CAediting_212416chr2_129970956_-ncRNA_intronic
CAediting_212417chr2_129971401_-ncRNA_intronic
CAediting_212418chr2_129971409_-ncRNA_intronic
CAediting_212419chr2_129971434_-ncRNA_intronic
CAediting_212420chr2_129971459_-ncRNA_intronic
CAediting_212421chr2_129971473_-ncRNA_intronic
CAediting_212422chr2_129971474_-ncRNA_intronic
CAediting_212423chr2_129971486_-ncRNA_intronic
CAediting_212424chr2_129971497_-ncRNA_intronic
CAediting_212425chr2_129971592_-ncRNA_intronic
CAediting_212426chr2_129971593_-ncRNA_intronic
CAediting_212427chr2_129971661_-ncRNA_intronic
CAediting_212428chr2_129971662_-ncRNA_intronic
CAediting_212429chr2_129971981_-ncRNA_intronic
CAediting_212430chr2_129971990_-ncRNA_intronic
CAediting_212431chr2_129972005_-ncRNA_intronic
CAediting_212432chr2_129972007_-ncRNA_intronic
CAediting_212433chr2_129972008_-ncRNA_intronic
CAediting_212434chr2_129972032_-ncRNA_intronic
CAediting_212435chr2_129972045_-ncRNA_intronic
CAediting_212436chr2_129972056_-ncRNA_intronic
CAediting_212437chr2_129972058_-ncRNA_intronic
CAediting_212438chr2_129973205_-ncRNA_intronic
CAediting_212439chr2_129973208_-ncRNA_intronic
CAediting_212440chr2_129973233_-ncRNA_intronic
CAediting_212441chr2_129973253_-ncRNA_intronic
CAediting_212442chr2_129973276_-ncRNA_intronic
CAediting_212443chr2_129973285_-ncRNA_intronic
CAediting_212444chr2_129973327_-ncRNA_intronic
CAediting_212445chr2_129973346_-ncRNA_intronic
CAediting_212446chr2_129973351_-ncRNA_intronic
CAediting_212447chr2_129973390_-ncRNA_intronic
CAediting_212448chr2_129973398_-ncRNA_intronic
CAediting_212449chr2_129973399_-ncRNA_intronic
CAediting_212450chr2_129973427_-ncRNA_intronic
CAediting_212451chr2_129974263_-ncRNA_intronic
CAediting_212452chr2_129974267_-ncRNA_intronic
CAediting_212453chr2_129974357_-ncRNA_intronic
CAediting_212454chr2_129974358_-ncRNA_intronic
CAediting_212455chr2_129974426_-ncRNA_intronic
CAediting_212456chr2_129974427_-ncRNA_intronic
CAediting_212457chr2_129974433_-ncRNA_intronic
CAediting_212458chr2_129974573_-ncRNA_intronic
CAediting_212459chr2_129974586_-ncRNA_intronic
CAediting_212460chr2_129974665_-ncRNA_intronic
CAediting_212461chr2_129974705_-ncRNA_intronic
CAediting_212462chr2_129974707_-ncRNA_intronic
CAediting_212463chr2_129974717_-ncRNA_intronic
CAediting_212464chr2_129974728_-ncRNA_intronic
CAediting_212465chr2_129975665_-ncRNA_intronic
CAediting_212466chr2_129975666_-ncRNA_intronic
CAediting_212467chr2_129975711_-ncRNA_intronic
CAediting_212468chr2_129975714_-ncRNA_intronic
CAediting_212469chr2_129975728_-ncRNA_intronic
CAediting_212470chr2_129975731_-ncRNA_intronic
CAediting_212471chr2_129975732_-ncRNA_intronic
CAediting_212472chr2_129975733_-ncRNA_intronic
CAediting_212473chr2_129975786_-ncRNA_intronic
CAediting_212474chr2_129975824_-ncRNA_intronic
CAediting_212475chr2_129975829_-ncRNA_intronic
CAediting_212476chr2_129975831_-ncRNA_intronic
CAediting_212477chr2_129975832_-ncRNA_intronic
CAediting_212478chr2_129975834_-ncRNA_intronic
CAediting_212479chr2_129975903_-ncRNA_intronic
CAediting_212480chr2_129975909_-ncRNA_intronic
CAediting_212481chr2_129975911_-ncRNA_intronic
CAediting_212482chr2_129975915_-ncRNA_intronic
CAediting_212483chr2_129976335_-ncRNA_intronic
CAediting_212484chr2_129976339_-ncRNA_intronic
CAediting_212485chr2_129976353_-ncRNA_intronic
CAediting_212486chr2_129976354_-ncRNA_intronic
CAediting_212487chr2_129976417_-ncRNA_intronic
CAediting_212488chr2_129976420_-ncRNA_intronic
CAediting_212489chr2_129976437_-ncRNA_intronic
CAediting_212490chr2_129976488_-ncRNA_intronic
CAediting_212491chr2_129976517_-ncRNA_intronic
CAediting_212492chr2_129976518_-ncRNA_intronic
CAediting_212493chr2_129976524_-ncRNA_intronic
CAediting_212494chr2_129976598_-ncRNA_intronic
CAediting_212495chr2_129978067_-ncRNA_intronic
CAediting_212496chr2_129978071_-ncRNA_intronic
CAediting_212497chr2_129978074_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_212394chr2_129969270_-SINEAluAluJr
CAediting_212395chr2_129969387_-SINEAluAluJr
CAediting_212396chr2_129969405_-SINEAluAluJr
CAediting_212397chr2_129969414_-SINEAluAluJr
CAediting_212398chr2_129969424_-SINEAluAluJr
CAediting_212399chr2_129969433_-SINEAluAluJr
CAediting_212400chr2_129969437_-SINEAluAluJr
CAediting_212401chr2_129969451_-SINEAluAluJr
CAediting_212402chr2_129969459_-SINEAluAluJr
CAediting_212403chr2_129969460_-SINEAluAluJr
CAediting_212404chr2_129969466_-SINEAluAluJr
CAediting_212405chr2_129969468_-SINEAluAluJr
CAediting_212406chr2_129969886_-SINEAluAluYj4
CAediting_212407chr2_129969894_-SINEAluAluYj4
CAediting_212408chr2_129969978_-SINEAluAluJo
CAediting_212409chr2_129969990_-SINEAluAluJo
CAediting_212410chr2_129969991_-SINEAluAluJo
CAediting_212411chr2_129970000_-SINEAluAluJo
CAediting_212412chr2_129970013_-SINEAluAluJo
CAediting_212413chr2_129970017_-SINEAluAluJo
CAediting_212414chr2_129970018_-SINEAluAluJo
CAediting_212415chr2_129970032_-SINEAluAluJo
CAediting_212416chr2_129970956_-SINEAluAluY
CAediting_212417chr2_129971401_-SINEAluAluSx1
CAediting_212418chr2_129971409_-SINEAluAluSx1
CAediting_212419chr2_129971434_-SINEAluAluSx1
CAediting_212420chr2_129971459_-SINEAluAluSx1
CAediting_212421chr2_129971473_-SINEAluAluSx1
CAediting_212422chr2_129971474_-SINEAluAluSx1
CAediting_212423chr2_129971486_-SINEAluAluSx1
CAediting_212424chr2_129971497_-SINEAluAluSx1
CAediting_212425chr2_129971592_-SINEAluAluSx1
CAediting_212426chr2_129971593_-SINEAluAluSx1
CAediting_212427chr2_129971661_-SINEAluAluSx1
CAediting_212428chr2_129971662_-SINEAluAluSx1
CAediting_212429chr2_129971981_-SINEAluFLAM_C
CAediting_212430chr2_129971990_-SINEAluFLAM_C
CAediting_212431chr2_129972005_-SINEAluFLAM_C
CAediting_212432chr2_129972007_-SINEAluFLAM_C
CAediting_212433chr2_129972008_-SINEAluFLAM_C
CAediting_212434chr2_129972032_-SINEAluFLAM_C
CAediting_212435chr2_129972045_-SINEAluFLAM_C
CAediting_212436chr2_129972056_-SINEAluFLAM_C
CAediting_212437chr2_129972058_-SINEAluFLAM_C
CAediting_212438chr2_129973205_-SINEAluAluSx
CAediting_212439chr2_129973208_-SINEAluAluSx
CAediting_212440chr2_129973233_-SINEAluAluSx
CAediting_212441chr2_129973253_-SINEAluAluSx
CAediting_212442chr2_129973276_-SINEAluAluSx
CAediting_212443chr2_129973285_-SINEAluAluSx
CAediting_212444chr2_129973327_-SINEAluAluSx
CAediting_212445chr2_129973346_-SINEAluAluSx
CAediting_212446chr2_129973351_-SINEAluAluSx
CAediting_212447chr2_129973390_-SINEAluAluSx
CAediting_212448chr2_129973398_-SINEAluAluSx
CAediting_212449chr2_129973399_-SINEAluAluSx
CAediting_212450chr2_129973427_-SINEAluAluSx
CAediting_212451chr2_129974263_-SINEAluAluSx
CAediting_212452chr2_129974267_-SINEAluAluSx
CAediting_212453chr2_129974357_-SINEAluAluSx
CAediting_212454chr2_129974358_-SINEAluAluSx
CAediting_212455chr2_129974426_-SINEAluAluSx
CAediting_212456chr2_129974427_-SINEAluAluSx
CAediting_212457chr2_129974433_-SINEAluAluSx
CAediting_212458chr2_129974573_-SINEAluAluYf1
CAediting_212459chr2_129974586_-SINEAluAluYf1
CAediting_212460chr2_129974665_-SINEAluAluYf1
CAediting_212461chr2_129974705_-SINEAluAluYf1
CAediting_212462chr2_129974707_-SINEAluAluYf1
CAediting_212463chr2_129974717_-SINEAluAluYf1
CAediting_212464chr2_129974728_-SINEAluAluYf1
CAediting_212465chr2_129975665_-SINEAluAluSz6
CAediting_212466chr2_129975666_-SINEAluAluSz6
CAediting_212467chr2_129975711_-SINEAluAluSz6
CAediting_212468chr2_129975714_-SINEAluAluSz6
CAediting_212469chr2_129975728_-SINEAluAluSz6
CAediting_212470chr2_129975731_-SINEAluAluSz6
CAediting_212471chr2_129975732_-SINEAluAluSz6
CAediting_212472chr2_129975733_-SINEAluAluSz6
CAediting_212473chr2_129975786_-SINEAluAluSz6
CAediting_212474chr2_129975824_-SINEAluAluSz6
CAediting_212475chr2_129975829_-SINEAluAluSz6
CAediting_212476chr2_129975831_-SINEAluAluSz6
CAediting_212477chr2_129975832_-SINEAluAluSz6
CAediting_212478chr2_129975834_-SINEAluAluSz6
CAediting_212479chr2_129975903_-SINEAluAluSz6
CAediting_212480chr2_129975909_-SINEAluAluSz6
CAediting_212481chr2_129975911_-SINEAluAluSz6
CAediting_212482chr2_129975915_-SINEAluAluSz6
CAediting_212483chr2_129976335_-SINEAluAluSx1
CAediting_212484chr2_129976339_-SINEAluAluSx1
CAediting_212485chr2_129976353_-SINEAluAluSx1
CAediting_212486chr2_129976354_-SINEAluAluSx1
CAediting_212487chr2_129976417_-SINEAluAluSx1
CAediting_212488chr2_129976420_-SINEAluAluSx1
CAediting_212489chr2_129976437_-SINEAluAluSx1
CAediting_212490chr2_129976488_-SINEAluAluSx1
CAediting_212491chr2_129976517_-SINEAluAluSx1
CAediting_212492chr2_129976518_-SINEAluAluSx1
CAediting_212493chr2_129976524_-SINEAluAluSx1
CAediting_212494chr2_129976598_-SINEAluAluSx1
CAediting_212495chr2_129978067_-SINEAluAluSc8
CAediting_212496chr2_129978071_-SINEAluAluSc8
CAediting_212497chr2_129978074_-SINEAluAluSc8

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RNA A-to-I editing events in the alternative splicing sites for RAB6C-AS1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000225449.3.RAB6C-AS1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000225449.3.RAB6C-AS1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB6C-AS1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RAB6C-AS1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RAB6C-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RAB6C-AS1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RAB6C-AS1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_212402chr2_129969459_-..0.01688113346857450.249931478977312..

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Relation with cancer stages for RAB6C-AS1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for RAB6C-AS1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for RAB6C-AS1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RAB6C-AS1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource