Home

Download

Statistics

Examples

Help

Contact

Editing gene: CDKN2B-AS1 (CAeditome ID:100048912)

Gene summary for CDKN2B-AS1

Gene summary

Gene information	Gene symbol	CDKN2B-AS1
	Gene ID	100048912
	Gene name	CDKN2B antisense RNA 1
	Synonyms	ANRIL\|CDKN2B-AS\|CDKN2BAS\|NCRNA00089\|PCAT12\|p15AS
	Cytomap	9p21.3
	Type of gene	ncRNA
	Description	CDKN2B antisense RNA 1 (non-protein coding)antisense noncoding RNA in the INK4 locusp15 antisense RNAprostate cancer associated transcript 12
	Modification date	20210524
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for CDKN2B-AS1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000240498.5

RNA A-to-I editing events in Cancer.

CAediting_679751(22032757, +), CAediting_679752(22032758, +), CAediting_679753(22032759, +), CAediting_679754(22032760, +), CAediting_679755(22032765, +), CAediting_679756(22032766, +), CAediting_679757(22032767, +), CAediting_679758(22032769, +), CAediting_679759(22032783, +), CAediting_679760(22032784, +), CAediting_679761(22032786, +), CAediting_679762(22032787, +), CAediting_679763(22032789, +), CAediting_679764(22032800, +), CAediting_679765(22032801, +), CAediting_679766(22032802, +), CAediting_679767(22032863, +), CAediting_679768(22032868, +), CAediting_679769(22032878, +), CAediting_679770(22032880, +), CAediting_679771(22032889, +), CAediting_679772(22032890, +), CAediting_679773(22032891, +), CAediting_679774(22032900, +), CAediting_679775(22032917, +), CAediting_679776(22033041, +), CAediting_679777(22056253, +), CAediting_679778(22056279, +), CAediting_679779(22079432, +),

Top

RNA editing positional annotations for CDKN2B-AS1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_679751	chr9_22032757_+	ncRNA_exonic
CAediting_679752	chr9_22032758_+	ncRNA_exonic
CAediting_679753	chr9_22032759_+	ncRNA_exonic
CAediting_679754	chr9_22032760_+	ncRNA_exonic
CAediting_679755	chr9_22032765_+	ncRNA_exonic
CAediting_679756	chr9_22032766_+	ncRNA_exonic
CAediting_679757	chr9_22032767_+	ncRNA_exonic
CAediting_679758	chr9_22032769_+	ncRNA_exonic
CAediting_679759	chr9_22032783_+	ncRNA_exonic
CAediting_679760	chr9_22032784_+	ncRNA_exonic
CAediting_679761	chr9_22032786_+	ncRNA_exonic
CAediting_679762	chr9_22032787_+	ncRNA_exonic
CAediting_679763	chr9_22032789_+	ncRNA_exonic
CAediting_679764	chr9_22032800_+	ncRNA_exonic
CAediting_679765	chr9_22032801_+	ncRNA_exonic
CAediting_679766	chr9_22032802_+	ncRNA_exonic
CAediting_679767	chr9_22032863_+	ncRNA_exonic
CAediting_679768	chr9_22032868_+	ncRNA_exonic
CAediting_679769	chr9_22032878_+	ncRNA_exonic
CAediting_679770	chr9_22032880_+	ncRNA_exonic
CAediting_679771	chr9_22032889_+	ncRNA_exonic
CAediting_679772	chr9_22032890_+	ncRNA_exonic
CAediting_679773	chr9_22032891_+	ncRNA_exonic
CAediting_679774	chr9_22032900_+	ncRNA_exonic
CAediting_679775	chr9_22032917_+	ncRNA_exonic
CAediting_679776	chr9_22033041_+	ncRNA_intronic
CAediting_679777	chr9_22056253_+	ncRNA_exonic
CAediting_679778	chr9_22056279_+	ncRNA_exonic
CAediting_679779	chr9_22079432_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_679776	chr9_22033041_+	DNA	hAT-Charlie	MER1B
CAediting_679777	chr9_22056253_+	SINE	Alu	AluSx3
CAediting_679778	chr9_22056279_+	SINE	Alu	AluSx3
CAediting_679779	chr9_22079432_+	SINE	Alu	AluSx

Top

RNA A-to-I editing events in the alternative splicing sites for CDKN2B-AS1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000240498.5.CDKN2B-AS1.

Correlation between RNA A-to-I editing and PSI for ENSG00000240498.5.CDKN2B-AS1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CDKN2B-AS1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for CDKN2B-AS1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for CDKN2B-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_679752	chr9_22032758_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4778-5p	22032755	22032761	7mer-m8	22032741	22032762	160	-14.69
CAediting_679755	chr9_22032765_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-2116-5p	22032762	22032769	8mer-1a	22032749	22032769	150	-14.78
CAediting_679755	chr9_22032765_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4677-5p	22032763	22032769	7mer-m8	22032750	22032770	149	-7.9
CAediting_679756	chr9_22032766_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4711-3p	22032764	22032770	7mer-m8	22032755	22032771	145	-10.53
CAediting_679756	chr9_22032766_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-511-5p	22032763	22032769	7mer-m8	22032750	22032770	154	-12
CAediting_679757	chr9_22032767_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-520f-3p	22032765	22032771	7mer-m8	22032747	22032772	158	-19.55
CAediting_679760	chr9_22032784_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-3682-5p	22032781	22032787	7mer-1a	22032766	22032787	142	-14.7
CAediting_679762	chr9_22032787_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-138-2-3p	22032781	22032787	7mer-m8	22032766	22032788	155	-19.39
CAediting_679762	chr9_22032787_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-8084	22032785	22032791	7mer-m8	22032770	22032792	140	-11.6
CAediting_679764	chr9_22032800_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-330-3p	22032794	22032801	8mer-1a	22032779	22032801	140	-8.82
CAediting_679768	chr9_22032868_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-197-3p	22032866	22032873	8mer-1a	22032850	22032873	144	-21.18
CAediting_679769	chr9_22032878_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-6740-3p	22032877	22032884	8mer-1a	22032862	22032884	159	-18.66
CAediting_679769	chr9_22032878_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-942-5p	22032875	22032882	8mer-1a	22032861	22032882	152	-17.31
CAediting_679770	chr9_22032880_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-2355-3p	22032879	22032885	7mer-m8	22032865	22032886	165	-17.43
CAediting_679771	chr9_22032889_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-607	22032885	22032891	7mer-m8	22032870	22032892	145	-7.43
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-181a-5p	22032895	22032901	7mer-m8	22032881	22032902	157	-17.33
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-181b-5p	22032895	22032901	7mer-m8	22032881	22032902	155	-15.12
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-181c-5p	22032895	22032901	7mer-m8	22032881	22032902	150	-10.91
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-181d-5p	22032895	22032901	7mer-m8	22032881	22032902	151	-12.96
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-3143	22032897	22032903	7mer-m8	22032884	22032904	145	-13.38
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4262	22032895	22032901	7mer-m8	22032886	22032902	144	-9.23
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-543	22032896	22032903	8mer-1a	22032882	22032903	153	-14.41
CAediting_679766	chr9_22032802_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-549a-3p	22032801	22032807	7mer-m8	22032786	22032808	152	-14.78
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-3918	22032857	22032863	7mer-m8	22032844	22032864	158	-27.24
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4685-5p	22032858	22032864	7mer-m8	22032838	22032865	158	-26.89
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4733-3p	22032860	22032866	7mer-m8	22032847	22032867	151	-17.39
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-6753-5p	22032859	22032865	7mer-m8	22032842	22032866	153	-31.65
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-6837-5p	22032858	22032864	7mer-m8	22032846	22032865	156	-28.2
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-7113-5p	22032859	22032864	6mer	22032845	22032865	147	-30.25
CAediting_679772	chr9_22032890_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4799-5p	22032885	22032891	7mer-m8	22032871	22032892	140	-6.43
CAediting_679772	chr9_22032890_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-520f-5p	22032886	22032892	7mer-m8	22032872	22032893	140	-10.69
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-1208	22049224	22056253	7mer-m8	22049212	22056254	140	-14.67
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-6509-3p	22049226	22056255	7mer-m8	22049213	22056256	150	-18.63
CAediting_679775	chr9_22032917_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-181d-3p	22032914	22032920	7mer-m8	22032902	22032921	148	-16.99

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-3190-5p	22056274	22056281	8mer-1a	22056262	22056281	147	-18.68
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679775	chr9_22032917_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-1285-3p	22032912	22032918	7mer-m8	22032896	22032919	150	-16.35
CAediting_679767	chr9_22032863_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-1296-5p	22032857	22032863	7mer-m8	22032842	22032864	145	-19.26
CAediting_679758	chr9_22032769_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-199a-5p	22032767	22032773	7mer-m8	22032752	22032774	145	-17.4
CAediting_679764	chr9_22032800_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-32-3p	22032799	22032804	6mer	22032785	22032805	150	-13.56
CAediting_679765	chr9_22032801_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-32-3p	22032799	22032804	6mer	22032785	22032805	150	-13.56
CAediting_679766	chr9_22032802_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-32-3p	22032799	22032804	6mer	22032785	22032805	150	-13.56
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679752	chr9_22032758_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4775	22032757	22032764	8mer-1a	22032743	22032764	143	-5.5
CAediting_679753	chr9_22032759_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4775	22032757	22032764	8mer-1a	22032743	22032764	143	-5.5
CAediting_679754	chr9_22032760_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-4775	22032757	22032764	8mer-1a	22032743	22032764	143	-5.5
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-5692b	22032898	22032904	7mer-m8	22032885	22032905	146	-8.95
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-5692c	22032898	22032904	7mer-m8	22032883	22032905	146	-9.84
CAediting_679774	chr9_22032900_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-6074	22032895	22032901	7mer-m8	22032883	22032902	142	-8.12
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-622	22056278	22056284	7mer-m8	22056265	22056285	150	-17.01
CAediting_679769	chr9_22032878_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-627-3p	22032875	22032882	8mer-1a	22032863	22032882	143	-15.01
CAediting_679770	chr9_22032880_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-627-3p	22032875	22032882	8mer-1a	22032863	22032882	143	-15.01
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-3190-5p	22056274	22056281	8mer-1a	22056262	22056281	147	-18.68
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-622	22056278	22056284	7mer-m8	22056265	22056285	150	-17.01
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-3190-5p	22056274	22056281	8mer-1a	22056262	22056281	147	-18.68
CAediting_679777	chr9_22056253_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-4684-5p	22049228	22056257	7mer-m8	22049212	22056258	153	-15.95
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-548s	22056273	22056279	7mer-m8	22056259	22056280	143	-12.53
CAediting_679778	chr9_22056279_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-622	22056278	22056284	7mer-m8	22056265	22056285	150	-17.01

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000585267.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000585267.4	hsa-miR-195-3p	22112344	22112350	7mer-m8	22112330	22112351	146	-13.9
CAediting_1351755	chr19_40282625_-	ENSG00000240498.5	ENST00000585267.4	hsa-miR-641	22118646	22118653	8mer-1a	22113786	22118653	153	-16.66
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000584020.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000584637.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000584637.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000584637.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000577551.4	hsa-miR-195-3p	22112344	22112350	7mer-m8	22112330	22112351	146	-13.9
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000577551.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_1351755	chr19_40282625_-	ENSG00000240498.5	ENST00000577551.4	hsa-miR-641	22118646	22118653	8mer-1a	22112382	22118653	152	-15.69
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1229415	chr17_67471547_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-548aa	22063952	22063957	6mer	22062016	22063958	145	-16.57
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_442554	chr5_154685830_+	ENSG00000240498.5	ENST00000584351.4	hsa-miR-1303	22058361	22058367	7mer-m8	22056376	22058368	147	-14.07
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000584351.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000582072.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000582072.4	hsa-miR-195-3p	22112344	22112350	7mer-m8	22112330	22112351	146	-13.9
CAediting_1351755	chr19_40282625_-	ENSG00000240498.5	ENST00000582072.4	hsa-miR-641	22118646	22118653	8mer-1a	22113786	22118653	153	-16.66
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000582072.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000582072.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1229415	chr17_67471547_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-548aa	22063952	22063957	6mer	22056379	22063958	140	-14.91
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000582301.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000582301.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1229415	chr17_67471547_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-548aa	22063952	22063957	6mer	22062016	22063958	145	-16.57
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000580467.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000580467.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1229414	chr17_67471546_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-548aa	22056283	22056289	7mer-m8	22056266	22056290	140	-10.86
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000581051.4	hsa-miR-195-3p	22112344	22112350	7mer-m8	22112330	22112351	146	-13.9
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000581051.4	hsa-miR-195-3p	22120221	22120227	7mer-m8	22120206	22120228	160	-17.63
CAediting_1351755	chr19_40282625_-	ENSG00000240498.5	ENST00000581051.4	hsa-miR-641	22118646	22118653	8mer-1a	22112382	22118653	152	-15.69
CAediting_228905	chr2_188297554_+	ENSG00000240498.5	ENST00000581051.4	hsa-miR-561-3p	22056291	22056296	6mer	22056276	22056297	150	-18.38
CAediting_573001	chr7_92204086_-	ENSG00000240498.5	ENST00000581051.4	hsa-miR-1285-5p	22056348	22056355	8mer-1a	22056333	22056355	157	-28.48
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000585267.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000584020.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000584637.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000577551.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000584351.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000582072.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000582301.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000580467.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000583719.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000581051.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31
CAediting_1524209	chrX_134546392_-	ENSG00000240498.5	ENST00000584816.4	hsa-miR-503-5p	21995123	21995129	7mer-m8	21995111	21995130	149	-27.31

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000584351.4	hsa-miR-195-3p	22029471	22029477	7mer-m8	22029457	22029478	146	-14.47
CAediting_1160181	chr17_7017644_-	ENSG00000240498.5	ENST00000584351.4	hsa-miR-195-3p	22046317	22046323	7mer-1a	22032972	22046323	148	-15.95

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CDKN2B-AS1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for CDKN2B-AS1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for CDKN2B-AS1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for CDKN2B-AS1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for CDKN2B-AS1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for CDKN2B-AS1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
CDKN2B-AS1	C0014175	Endometriosis	1	CTD_human
CDKN2B-AS1	C0017612	Glaucoma, Open-Angle	1	CTD_human
CDKN2B-AS1	C0023434	Chronic Lymphocytic Leukemia	1	CTD_human
CDKN2B-AS1	C0026640	Mouth Neoplasms	1	CTD_human
CDKN2B-AS1	C0153381	Malignant neoplasm of mouth	1	CTD_human
CDKN2B-AS1	C0269102	Endometrioma	1	CTD_human
CDKN2B-AS1	C0271148	Secondary Open Angle Glaucoma	1	CTD_human
CDKN2B-AS1	C0333704	Chromosome Breaks	1	CTD_human
CDKN2B-AS1	C0339573	Glaucoma, Primary Open Angle	1	CTD_human
CDKN2B-AS1	C0376628	Chromosome Breakage	1	CTD_human
CDKN2B-AS1	C2931822	Nasopharyngeal carcinoma	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene